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28 Matching Annotations

Sep 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Long-range mRNA folding shapes expression and sequence of bacterial genes

1
1. scibot 09 Sep 2026
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.molcel.2026.08.014
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13557106/
Apr 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

The RNA-binding protein HuR modulates the expression of the disease-linked CCL2 rs1024611G-rs13900T haplotype

1
1. scibot 24 Apr 2026
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.93108
  
  Resource: RRID:SCR_008550
  
  Curator: @nmaralla
  
  SciCrunch record: RRID:SCR_008550
  
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  RRIDCUR:Unresolved RRID:SCR_008550
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pmc.ncbi.nlm.nih.gov/articles/PMC12803514/
Dec 2025
www.sciencedirect.com:5037 www.sciencedirect.com:5037

TDP-43 dysfunction compromises UPF1-dependent mRNA metabolism in ALS

1
1. scibot 14 Dec 2025
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.neuron.2025.11.001
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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scibot

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sciencedirect.com:5037/science/article/pii/S0896627325008487
Jul 2025
elifesciences.org elifesciences.org

Exploiting functional regions in the viral RNA genome as druggable entities

1
1. scibot 03 Jul 2025
  
  in Public
  
  Vienna RNA
  
  DOI: 10.7554/eLife.103923.2
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @areedewitt04
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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elifesciences.org/reviewed-preprints/103923v2
Dec 2024
www.sciencedirect.com www.sciencedirect.com

Quantitative profiling of human translation initiation reveals elements that potently regulate endogenous and therapeutically modified mRNAs

1
1. scibot 21 Dec 2024
  
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  RRID:SCR_008550
  
  DOI: 10.1016/j.molcel.2024.11.030
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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sciencedirect.com/science/article/pii/S1097276524009559
Sep 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Prediction of the effects of the top 10 synonymous mutations from 26645 SARS-CoV-2 genomes of early pandemic phase

1
1. scibot 26 Sep 2024
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.12688/f1000research.72896.4
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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ncbi.nlm.nih.gov/pmc/articles/PMC11391198/
Jun 2024
www.sciencedirect.com www.sciencedirect.com

CGG repeats in the human FMR1 gene regulate mRNA localization and cellular stress in developing neurons

1
1. scibot 21 Jun 2024
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.celrep.2024.114330
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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sciencedirect.com/science/article/pii/S2211124724006582
Sep 2023
www.sciencedirect.com www.sciencedirect.com

Utilizing directed evolution to interrogate and optimize CRISPR/Cas guide RNA scaffolds

1
1. scibot 27 Sep 2023
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.chembiol.2023.06.007
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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sciencedirect.com/science/article/pii/S2451945623001848
Jan 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Resistance to white spot syndrome virus in the European shore crab is associated with suppressed virion trafficking and heightened immune responses

1
1. scibot 15 Jan 2023
  
  in Public
  
  SCR_008550
  
  DOI: 10.3389/fimmu.2022.1057421
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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ncbi.nlm.nih.gov/pmc/articles/PMC9831657/
Aug 2022
www.sciencedirect.com www.sciencedirect.com

Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins

1
1. scibot 27 Aug 2022
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.xpro.2022.101648
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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sciencedirect.com/science/article/pii/S2666166722005287
May 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Brucella activates the host RIDD pathway to subvert BLOS1-directed immune defense

1
1. scibot 21 May 2022
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.73625
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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ncbi.nlm.nih.gov/pmc/articles/PMC9119680/
Oct 2021
f1000research.com f1000research.com

F1000Research Article: Prediction of the Effects of Synonymous Variants on SARS-CoV-2 Genome.

1
1. scibot 23 Oct 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.12688/f1000research.72896.1
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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f1000research.com/articles/10-1053
onlinelibrary.wiley.com onlinelibrary.wiley.com

TPRG1-AS1 induces RBM24 expression and inhibits liver cancer progression by sponging miR-4691-5p and miR-3659

1
1. scibot 20 Oct 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1111/liv.15026
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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onlinelibrary.wiley.com/doi/10.1111/liv.15026
Sep 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

1
1. scibot 22 Sep 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.71611
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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ncbi.nlm.nih.gov/pmc/articles/PMC8443254/
www.sciencedirect.com www.sciencedirect.com

The RNA-binding protein Musashi controls axon compartment-specific synaptic connectivity through ptp69D mRNA poly(A)-tailing

1
1. scibot 16 Sep 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.celrep.2021.109713
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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URL

sciencedirect.com/science/article/pii/S2211124721011621
Aug 2021
elifesciences.org elifesciences.org

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation

1
1. scibot 11 Aug 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.19760
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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RRID:SCR_008550

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scibot

URL

elifesciences.org/articles/19760
Jul 2021
www.sciencedirect.com www.sciencedirect.com

Untitled document

1
1. scibot 30 Jul 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.mce.2018.11.002
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_008550
  
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  RRIDCUR:Validated RRID:SCR_008550
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RRIDCUR:Validated

RRID:SCR_008550

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scibot

URL

sciencedirect.com/science/article/pii/S0303720718303204
www.sciencedirect.com www.sciencedirect.com

The RNA-Binding Protein PUM2 Impairs Mitochondrial Dynamics and Mitophagy During Aging

1
1. scibot 28 Jul 2021
  
  in Public
  
  Vienna package
  
  DOI: 10.1016/j.molcel.2018.11.034
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_008550
  
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  RRIDCUR:Missing RRID:SCR_008550
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RRID:SCR_008550

RRIDCUR:Missing

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scibot

URL

sciencedirect.com/science/article/pii/S1097276518310049
www.sciencedirect.com www.sciencedirect.com

Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing

1
1. scibot 27 Jul 2021
  
  in Public
  
  RNAfold
  
  DOI: 10.1016/j.molcel.2018.09.033
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_008550
  
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  RRIDCUR:Missing RRID:SCR_008550
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RRID:SCR_008550

RRIDCUR:Missing

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scibot

URL

sciencedirect.com/science/article/pii/S1097276518308323
Jun 2021
elifesciences.org elifesciences.org

PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR

1
1. scibot 05 Jun 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.68263
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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scibot

URL

elifesciences.org/articles/68263
May 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Integrated sensing of host stresses by inhibition of a cytoplasmic two-component system controls M. tuberculosis acute lung infection

1
1. scibot 21 May 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.7554/eLife.65351
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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RRID:SCR_008550

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8131098/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

RNA helicase–regulated processing of the Synechocystis rimO–crhR operon results in differential cistron expression and accumulation of two sRNAs

1
1. scibot 12 May 2021
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1074/jbc.RA120.013148
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550
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URL

ncbi.nlm.nih.gov/pmc/articles/PMC7212639/
Sep 2020
www.sciencedirect.com www.sciencedirect.com

Structure-Mediated RNA Decay by UPF1 and G3BP1

1
1. scibot 17 Sep 2020
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.molcel.2020.01.021
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_008550

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scibot

URL

sciencedirect.com/science/article/pii/S1097276520300423
Jan 2020
www.sciencedirect.com www.sciencedirect.com

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.celrep.2019.11.025
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_008550

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scibot

URL

sciencedirect.com/science/article/pii/S2211124719314962
www.sciencedirect.com www.sciencedirect.com

The TGFB2-AS1 lncRNA Regulates TGF-β Signaling by Modulating Corepressor Activity

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.celrep.2019.08.028
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_008550
  
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  RRID:SCR_008550 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_008550

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scibot

URL

sciencedirect.com/science/article/pii/S2211124719310629
www.sciencedirect.com www.sciencedirect.com

Untitled document

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_008550
  
  DOI: 10.1016/j.mce.2018.11.002
  
  Resource: Vienna RNA (RRID:SCR_008550)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_008550
  
  What is this?
  
  RRID:SCR_008550 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_008550

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scibot

URL

sciencedirect.com/science/article/pii/S0303720718303204
Nov 2017
www.sciencedirect.com www.sciencedirect.com

Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs

1
1. scibot 08 Nov 2017
  
  in Public
  
  RNA fold
  
  Curator: @Zeljana_Babic
  
  Resource used:
  
  (Vienna RNA, RRID:SCR_008550)
  
  SciCrunch record: RRID:SCR_008550
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
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  RRID:SCR_008550 RRIDCUR:Missing
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RRID:SCR_008550

RRIDCUR:Missing

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scibot

URL

sciencedirect.com/science/article/pii/S1534580716309169
elifesciences.org elifesciences.org

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation

1
1. scibot 08 Nov 2017
  
  in Public
  
  SCR_008550
  
  Resource used:
  
  (Vienna RNA, RRID:SCR_008550)
  
  SciCrunch record: RRID:SCR_008550
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_008550
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RRID:SCR_008550

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scibot

URL

elifesciences.org/articles/19760