157 Matching Annotations
  1. Last 7 days
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    Analysis of 3D pathology samples using weakly supervised AI
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    1. scibot 10 May 2024
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    sciencedirect.com/science/article/pii/S0092867424003519
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    VitTCR: A deep learning method for peptide recognition prediction
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    ncbi.nlm.nih.gov/pmc/articles/PMC11070698/
  4. Apr 2024
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modeling non-genetic information dynamics in cells using reservoir computing
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    ncbi.nlm.nih.gov/pmc/articles/PMC11022048/
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    Agent-based models under uncertainty
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    ncbi.nlm.nih.gov/pmc/articles/PMC10988201/
  7. Mar 2024
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    Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control
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    sciencedirect.com/science/article/pii/S2211124724003048
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    Combinatorial selective ER-phagy remodels the ER during neurogenesis
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    nature.com/articles/s41556-024-01356-4
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    Sexually dimorphic control of affective state processing and empathic behaviors
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    sciencedirect.com/science/article/pii/S0896627324000850
  11. Feb 2024
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    SARS-CoV-2-infection- and vaccine-induced antibody responses are long lasting with an initial waning phase followed by a stabilization phase
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    sciencedirect.com/science/article/pii/S1074761324000438
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    Female vs. male relative fatality risk in fatal motor vehicle crashes in the US, 1975–2020
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    1. scibot 15 Feb 2024
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      DOI: 10.1371/journal.pone.0297211

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    ncbi.nlm.nih.gov/pmc/articles/PMC10861033/
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    Molecular alterations in metaphase chromosomes induced by bleomycin
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    sciencedirect.com/science/article/pii/S1386142524001926
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    Protocol to train a support vector machine for the automatic curation of bacterial cell detections in microscopy images
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    sciencedirect.com/science/article/pii/S2666166724000339
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    PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans
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    sciencedirect.com/science/article/pii/S1534580724000054
  17. Jan 2024
  18. www.nature.com www.nature.com
    Cell-type-directed design of synthetic enhancers
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    1. scibot 25 Jan 2024
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      DOI: 10.1038/s41586-023-06936-2

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    Descending control and regulation of spontaneous flight turns in Drosophila
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    1. scibot 19 Jan 2024
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      DOI: 10.1016/j.cub.2023.12.047

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    sciencedirect.com/science/article/pii/S0960982223017475
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    Discrete prefrontal neuronal circuits determine repeated stress-induced behavioral phenotypes in male mice
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      DOI: 10.1016/j.neuron.2023.12.004

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    Effect of intracranial electrical stimulation on dynamic functional connectivity in medically refractory epilepsy
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    1. scibot 10 Jan 2024
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      DOI: 10.3389/fnhum.2023.1295326

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    ncbi.nlm.nih.gov/pmc/articles/PMC10765510/
  22. Dec 2023
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    Cross-linking breast tumor transcriptomic states and tissue histology
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    sciencedirect.com/science/article/pii/S2666379123005074
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    Molecular determinants of the crosstalk between endosomal microautophagy and chaperone-mediated autophagy
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    sciencedirect.com/science/article/pii/S2211124723015413
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    Somatic hypermutation introduces bystander mutations that prepare SARS-CoV-2 antibodies for emerging variants
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      DOI: 10.1016/j.immuni.2023.11.004

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    Intrinsically disordered proteins and liquid–liquid phase separation in SARS-CoV-2 interactomes
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      DOI: 10.1002/jcb.30502

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    onlinelibrary.wiley.com/doi/10.1002/jcb.30502
  27. Nov 2023
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    Reproducible and fully automated testing of nocifensive behavior in mice
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      DOI: 10.1016/j.crmeth.2023.100650

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    sciencedirect.com/science/article/pii/S2667237523003211
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    Combined analytical approach empowers precise spectroscopic interpretation of subcellular components of pancreatic cancer cells
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      DOI: 10.1007/s00216-023-04997-w

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    link.springer.com/article/10.1007/s00216-023-04997-w
  30. Oct 2023
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    A spatio-temporal image analysis for growth of indeterminate pulmonary nodules detected by CT scan
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      DOI: 10.1007/s12194-023-00750-1

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    link.springer.com/article/10.1007/s12194-023-00750-1
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    In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
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      DOI: 10.1016/j.xgen.2023.100410

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    ncbi.nlm.nih.gov/pmc/articles/PMC10589630/
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    The T766M-EGFR lung cancer mutation promotes tumor growth by exploiting newfound assembly mechanisms in ligand-free EGFR oligomers
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      DOI: 10.1101/2023.06.16.545259

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    MEG frequency tagging reveals a grid-like code during attentional movements
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      DOI: 10.1016/j.celrep.2023.113209

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    Personalised simulation of hemodynamics in cerebrovascular disease: lessons learned from a study of diagnostic accuracy
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      DOI: 10.3389/fneur.2023.1230402

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    ncbi.nlm.nih.gov/pmc/articles/PMC10523575/
  36. Sep 2023
  37. www.sciencedirect.com www.sciencedirect.com
    The Drosophila ecdysone receptor promotes or suppresses proliferation according to ligand level
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      DOI: 10.1016/j.devcel.2023.08.032

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    sciencedirect.com/science/article/pii/S1534580723004604
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    Protocol to analyze fundus images for multidimensional quality grading and real-time guidance using deep learning techniques
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      DOI: 10.1016/j.xpro.2023.102565

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    A database of restriction maps to expand the utility of bacterial artificial chromosomes
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      DOI: 10.46471/gigabyte.93

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    ncbi.nlm.nih.gov/pmc/articles/PMC10518450/
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    Utilizing directed evolution to interrogate and optimize CRISPR/Cas guide RNA scaffolds
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      DOI: 10.1016/j.chembiol.2023.06.007

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    sciencedirect.com/science/article/pii/S2451945623001848
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    Increasing Familiarity With the Heartbeat Counting Task Does Not Affect Performance
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      DOI: 10.1016/j.biopsycho.2023.108662

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    sciencedirect.com/science/article/pii/S0301051123001801
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    Mitochondrial network adaptations of microglia reveal sex-specific stress response after injury and UCP2 knockout
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    ncbi.nlm.nih.gov/pmc/articles/PMC10507162/
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    Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
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      DOI: 10.1016/j.neuron.2023.08.004

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    sciencedirect.com/science/article/pii/S0896627323005858
  44. Aug 2023
  45. www.biorxiv.org www.biorxiv.org
    High-level prediction errors in low-level visual cortex
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      DOI: 10.1101/2023.08.21.554095

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    biorxiv.org/content/10.1101/2023.08.21.554095v1
  46. www.frontiersin.org www.frontiersin.org
    Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs
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      DOI: 10.3389/fmicb.2021.601490

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    frontiersin.org/article/10.3389/fmicb.2021.601490/full
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    Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus
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      DOI: 10.1016/j.celrep.2023.112874

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    sciencedirect.com/science/article/pii/S2211124723008859
  48. Jul 2023
  49. www.sciencedirect.com www.sciencedirect.com
    Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4+ T cell immunity
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      DOI: 10.1016/j.celrep.2023.112827

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    sciencedirect.com/science/article/pii/S2211124723008380
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
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      DOI: 10.7554/eLife.86127

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    ncbi.nlm.nih.gov/pmc/articles/PMC10344426/
  51. Jun 2023
  52. open-research-europe.ec.europa.eu open-research-europe.ec.europa.eu
    MultiOptForest: An interactive multi-objective optimization tool ...
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      DOI: 10.12688/openreseurope.15812.1

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  55. May 2023
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    Reconstruction of a polyclonal ADCC antibody repertoire from an HIV-1 non-transmitting mother
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    Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation
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  59. Apr 2023
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  62. Mar 2023
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    PreprintMatch: A tool for preprint to publication detection shows global inequities in scientific publication
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  64. Feb 2023
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    Social behavioral profiling by unsupervised deep learning reveals a stimulative effect of dopamine D3 agonists on zebrafish sociality
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    Variabilities in global DNA methylation and β-sheet richness establish spectroscopic landscapes among subtypes of pancreatic cancer
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    Graft-versus-host disease is locally maintained in target tissues by resident progenitor-like T cells
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  69. Jan 2023
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    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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    Improved ANAP incorporation and VCF analysis reveal details of P2X7 current facilitation and a limited conformational interplay between ATP binding and the intracellular ballast domain
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  72. Dec 2022
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  76. Nov 2022
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    A role for the centrosome in regulating the rate of neuronal efferocytosis by microglia in vivo
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  79. Oct 2022
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    A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
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  81. Sep 2022
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    Experimental reproducibility limits the correlation between mRNA and protein abundances in tumor proteomic profiles
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    Design principles to assemble drug combinations for effective tuberculosis therapy using interpretable pairwise drug response measurements
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    SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression
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    SARS-CoV-2 Omicron sublineages exhibit distinct antibody escape patterns
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  90. Jul 2022
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    Comprehensive fitness landscape of SARS-CoV-2 Mpro reveals insights into viral resistance mechanisms
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    Investigating anticancer potency of in vitro propagated endemic Thymus cilicicus Boiss. & Bal. extract on human lung, breast, and prostate cancer cell lines
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  93. Jun 2022
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    A deep learning based CT image analytics protocol to identify lung adenocarcinoma category and high-risk tumor area
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    EpiTopics: A dynamic machine learning model to predict and inform non-pharmacological public health interventions from global news reports
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  97. Apr 2022
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    Subversion of serotonin-receptor signaling in osteoblasts by kynurenine drives Acute Myeloid Leukemia
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  99. Mar 2022
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    A weakened recurrent circuit in the hippocampus of Rett syndrome mice disrupts long-term memory representations
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  103. Feb 2022
  104. elifesciences.org elifesciences.org
    Structural basis of Plasmodium vivax inhibition by antibodies binding to the circumsporozoite protein repeats
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    A population of descending neurons that regulates the flight motor of Drosophila
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  106. Dec 2021
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    Distinct molecular pathways govern presynaptic homeostatic plasticity
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  126. Jul 2021
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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  151. Dec 2020
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  155. Oct 2020
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    VIP interneurons in mouse primary visual cortex selectively enhance responses to weak but specific stimuli
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  157. Sep 2020
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    Negative Modulation of TRPM8 Channel Function by Protein Kinase C in Trigeminal Cold Thermoreceptor Neurons
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    Dopamine Buffering Capacity Imaging: A Pharmacodynamic fMRI Method for Staging Parkinson Disease
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  161. elifesciences.org elifesciences.org
    Experience shapes activity dynamics and stimulus coding of VIP inhibitory cells
    1
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      DOI: 10.7554/eLife.50340

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  162. Jan 2020
  163. www.sciencedirect.com www.sciencedirect.com
    The Dynamics of Cytoplasmic mRNA Metabolism
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      DOI: 10.1016/j.molcel.2019.12.005

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  164. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Action in auctions: neural and computational mechanisms of bidding behaviour
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      DOI: 10.1111/ejn.14492

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  165. www.sciencedirect.com www.sciencedirect.com
    Flies Regulate Wing Motion via Active Control of a Dual-Function Gyroscope
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      DOI: 10.1016/j.cub.2019.08.065

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  166. www.sciencedirect.com www.sciencedirect.com
    Tricalbin-Mediated Contact Sites Control ER Curvature to Maintain Plasma Membrane Integrity
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      DOI: 10.1016/j.devcel.2019.10.018

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  167. www.jneurosci.org www.jneurosci.org
    Role of TRPM8 channels in altered cold sensitivity of corneal primary sensory neurons induced by axonal damage
    1
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      DOI: 10.1523/JNEUROSCI.0654-19.2019

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  168. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Task‐dependent responses to muscle vibration during reaching
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      DOI: 10.1111/ejn.14292

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  169. www.eneuro.org www.eneuro.org
    Fast, flexible closed-loop feedback: Tracking movement in “real-millisecond-time”
    1
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      RRID:SCR_008624

      DOI: 10.1523/ENEURO.0147-19.2019

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  170. www.sciencedirect.com www.sciencedirect.com
    Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis
    1
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      DOI: 10.1016/j.molcel.2019.06.037

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  171. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Suppressed Sensory Response to Predictable Object Stimuli throughout the Ventral Visual Stream
    1
    1. scibot 13 Jan 2020
      RRID:SCR_008624

      DOI: 10.1523/JNEUROSCI.3421-17.2018

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  172. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Statistical learning attenuates visual activity only for attended stimuli
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    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.47869

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  173. www.sciencedirect.com www.sciencedirect.com
    MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs
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      DOI: 10.1016/j.molcel.2019.12.004

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  174. www.sciencedirect.com www.sciencedirect.com
    Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
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      DOI: 10.1016/j.molcel.2019.11.010

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  175. Apr 2019
  176. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A functional circuit model of interaural time difference processing
    1
    1. scibot 05 Apr 2019
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  177. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A model for attentional information routing through coherence predicts biased competition and multistable perception
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  178. Nov 2018
  179. www.sciencedirect.com www.sciencedirect.com
    Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes
    1
    1. scibot 05 Nov 2018
      Matplotlib

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    sciencedirect.com/science/article/pii/S0092867418312443
  180. www.sciencedirect.com www.sciencedirect.com
    Sun Navigation Requires Compass Neurons in Drosophila
    1
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    sciencedirect.com/science/article/pii/S0960982218309011
  181. www.sciencedirect.com www.sciencedirect.com
    Two Forms of Synaptic Depression Produced by Differential Neuromodulation of Presynaptic Calcium Channels
    1
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    sciencedirect.com/science/article/pii/S0896627318306287
  182. www.frontiersin.org www.frontiersin.org
    Untitled document
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    frontiersin.org/article/10.3389/fnins.2018.00316/full
  183. www.sciencedirect.com www.sciencedirect.com
    Free Energy Landscape for the Entire Transport Cycle of Triose-Phosphate/Phosphate Translocator
    1
    1. scibot 05 Nov 2018
      matplotlib

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    sciencedirect.com/science/article/pii/S096921261830176X
  184. www.sciencedirect.com www.sciencedirect.com
    FGF20-Expressing, Wnt-Responsive Olfactory Epithelial Progenitors Regulate Underlying Turbinate Growth to Optimize Surface Area
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S1534580718305951
  185. www.jneurosci.org www.jneurosci.org
    Role of the Excitability Brake Potassium Current IKD in Cold Allodynia Induced by Chronic Peripheral Nerve Injury
    1
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    jneurosci.org/content/37/12/3109
  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neural Responses to Naturalistic Clips of Behaving Animals in Two Different Task Contexts
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC5962655/
  187. elifesciences.org elifesciences.org
    Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock
    1
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    elifesciences.org/articles/33843
  188. www.sciencedirect.com www.sciencedirect.com
    Different Neuronal Activity Patterns Induce Different Gene Expression Programs
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    sciencedirect.com/science/article/pii/S089662731830285X
  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mouse color and wavelength-specific luminance contrast sensitivity are non-uniform across visual space.
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    ncbi.nlm.nih.gov/pmc/articles/PMC5762155/
  190. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Eye‐specific segregation and differential fasciculation of developing retinal ganglion cell axons in the mouse visual pathway
    1
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    onlinelibrary.wiley.com/doi/10.1002/cne.24392/full
  191. Nov 2017
  192. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status
    1
    1. scibot 08 Nov 2017
      Matplotlib

      Curator: @Zeljana_Babic

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    ncbi.nlm.nih.gov/pmc/articles/PMC5140024/
  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Target DNA bending by the Mu transpososome promotes careful transposition and prevents its reversal
    1
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      SCR_008624

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    ncbi.nlm.nih.gov/pmc/articles/PMC5357137/
  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Feature Detection in Visual Cortex during Different Functional States
    1
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      SCR_008624

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    ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
  195. www.sciencedirect.com www.sciencedirect.com
    Mechanism of Substrate Translocation in an Alternating Access Transporter
    1
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      Matplotlib

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  196. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Early dysfunction and progressive degeneration of the subthalamic nucleus in mouse models of Huntington's disease
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC5199195/
  197. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A model for attentional information routing through coherence predicts biased competition and multistable perception
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      nif-0000-31991

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