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  1. Last 7 days
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Placental co-transcriptional activator Vestigial-like 1 (VGLL1) drives tumorigenesis via increasing transcription of proliferation and invasion genes
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    1. scibot 03 Jul 2024
      RRID:SCR_010910

      DOI: 10.3389/fonc.2024.1403052

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    ncbi.nlm.nih.gov/pmc/articles/PMC11190739/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-Mitochondrion Sequencing Uncovers Distinct Mutational Patterns and Heteroplasmy Landscape in Mouse Astrocytes and Neurons
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    1. scibot 02 Jul 2024
      RRID:SCR_010910

      DOI: 10.1101/2024.06.13.598906

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    ncbi.nlm.nih.gov/pmc/articles/PMC11195285/
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The TERT Promoter is Polycomb-Repressed in Neuroblastoma Cells with Long Telomeres
    1
    1. scibot 27 Jun 2024
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      DOI: 10.1158/2767-9764.CRC-22-0287

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    ncbi.nlm.nih.gov/pmc/articles/PMC11188873/
  5. Jun 2024
  6. www.sciencedirect.com www.sciencedirect.com
    Neoadjuvant sintilimab plus chemotherapy in EGFR-mutant NSCLC: Phase 2 trial interim results (NEOTIDE/CTONG2104)
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    1. scibot 22 Jun 2024
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      DOI: 10.1016/j.xcrm.2024.101615

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    sciencedirect.com/science/article/pii/S2666379124003197
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome
    1
    1. scibot 22 Jun 2024
      RRID:SCR_010

      DOI: 10.1093/gigascience/giae028

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    ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Post-meiotic mechanism of facultative parthenogenesis in gonochoristic whiptail lizard species
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    1. scibot 13 Jun 2024
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      DOI: 10.7554/eLife.97035

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    ncbi.nlm.nih.gov/pmc/articles/PMC11161175/
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    Mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1093/gigascience/giae023

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152177/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: evolutionary insights for horticultural innovation
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1093/gigascience/giae027

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152179/
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    Cell-type-specific effects of age and sex on human cortical neurons
    1
    1. scibot 05 Jun 2024
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      DOI: 10.1016/j.neuron.2024.05.013

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    sciencedirect.com/science/article/pii/S089662732400360X
  12. May 2024
  13. www.sciencedirect.com www.sciencedirect.com
    Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae
    3
    1. scibot 30 May 2024
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      DOI: 10.1016/j.cell.2024.04.047

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    2. scibot 30 May 2024
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      DOI: 10.1016/j.cell.2024.04.047

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    3. scibot 30 May 2024
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      DOI: 10.1016/j.cell.2024.04.047

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    sciencedirect.com/science/article/pii/S0092867424004732
  14. 52.53.155.43 52.53.155.43
    ccr-24-0753-html.html
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    1. scibot 30 May 2024
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      DOI: 10.1158/1078-0432.ccr-24-0753

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  15. 52.53.155.43 52.53.155.43
    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
    2
    1. scibot 29 May 2024
      RRID:SCR_010910

      DOI: 10.1101/2024.03.08.583864

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      DOI: 10.1101/2024.03.08.583864

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    52.53.155.43/18a5f967080cacc79c7f5cca9d1b0be744600675/2024.03.08.583864v1.full-html.html
  16. aacrjournals.org aacrjournals.org
    Germline mutations of Holliday junction resolvase genes in multiple primary malignancies involving lung cancer lead to PARP inhibitor sensitization
    1
    1. scibot 23 May 2024
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      DOI: 10.1158/1078-0432.CCR-22-3300

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    aacrjournals.org/clincancerres/article/30/8/1607/742128/Germline-Mutations-of-Holliday-Junction-Resolvase
  17. aacrjournals.org aacrjournals.org
    Response rate and molecular correlates to encorafenib and binimetinib in BRAF-V600E mutant high-grade glioma
    1
    1. scibot 23 May 2024
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      DOI: 10.1158/1078-0432.CCR-23-3241

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    aacrjournals.org/clincancerres/article/30/10/2048/745176/Response-Rate-and-Molecular-Correlates-to
  18. www.sciencedirect.com www.sciencedirect.com
    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
    1
    1. scibot 23 May 2024
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      DOI: 10.1016/j.immuni.2024.04.026

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    sciencedirect.com/science/article/pii/S1074761324002310
  19. aacrjournals.org aacrjournals.org
    Discovery of a novel potent EGFR inhibitor against EGFR activating mutations and on-target resistance in NSCLC
    2
    1. scibot 23 May 2024
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      DOI: 10.1158/1078-0432.CCR-23-2951

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      DOI: 10.1158/1078-0432.CCR-23-2951

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    aacrjournals.org/clincancerres/article/30/8/1582/742134/Discovery-of-a-Novel-Potent-EGFR-Inhibitor-Against
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    Ancient genomes revealed the complex human interactions of the ancient western Tibetans
    1
    1. scibot 23 May 2024
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      DOI: 10.1016/j.cub.2024.04.068

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    sciencedirect.com/science/article/pii/S0960982224005815
  21. aacrjournals.org aacrjournals.org
    Integrative molecular analyses of the MD Anderson prostate cancer patient-derived xenograft (MDA PCa PDX) series
    1
    1. scibot 17 May 2024
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      DOI: 10.1158/1078-0432.CCR-23-2438

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    aacrjournals.org/clincancerres/article/30/10/2272/745168/Integrative-Molecular-Analyses-of-the-MD-Anderson
  22. www.biorxiv.org www.biorxiv.org
    Unraveling Genome- and Immunome-wide Genetic Diversity in Jaguars (Panthera onca): Implications for Targeted Conservation
    1
    1. scibot 17 May 2024
      RRID:SCR_01091070

      DOI: 10.1101/2024.05.06.592690

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      DOI:10.1101/2024.05.06.592690 RRIDCUR:Unresolved RRID:SCR_010910
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    biorxiv.org/content/10.1101/2024.05.06.592690v1
  23. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    1. scibot 10 May 2024
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      DOI: 10.1101/2024.02.19.579948

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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
    1. scibot 08 May 2024
      RRID:SCR_010910

      DOI: 10.46471/gigabyte.123

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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  25. www.sciencedirect.com www.sciencedirect.com
    Protocol for a comprehensive pipeline to study ancient human genomes
    1
    1. scibot 07 May 2024
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      DOI: 10.1016/j.xpro.2024.102985

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    sciencedirect.com/science/article/pii/S2666166724001503
  26. Apr 2024
  27. dx.doi.org dx.doi.org
    Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
    1
    1. scibot 18 Apr 2024
      RRID:SCR_010910

      DOI: 10.1093/gigascience/giae014

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    dx.doi.org/10.1093/gigascience/giae014
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MYCN drives oncogenesis by cooperating with the histone methyltransferase G9a and the WDR5 adaptor to orchestrate global gene transcription
    1
    1. scibot 11 Apr 2024
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      DOI: 10.1371/journal.pbio.3002240

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    ncbi.nlm.nih.gov/pmc/articles/PMC11003700/
  29. www.sciencedirect.com www.sciencedirect.com
    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
    1
    1. scibot 04 Apr 2024
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      DOI: 10.1016/j.devcel.2024.03.020

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    sciencedirect.com/science/article/pii/S1534580724001886
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
    1
    1. scibot 03 Apr 2024
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      DOI: 10.46471/gigabyte.115

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    ncbi.nlm.nih.gov/pmc/articles/PMC10973836/
  31. www.sciencedirect.com www.sciencedirect.com
    Ancient genome of the Chinese Emperor Wu of Northern Zhou
    1
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      DOI: 10.1016/j.cub.2024.02.059

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    sciencedirect.com/science/article/pii/S0960982224002409
  32. Mar 2024
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
    1
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      DOI: 10.3389/fmicb.2024.1348063

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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
    1
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      DOI: 10.1158/2159-8290.CD-22-1297

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    ncbi.nlm.nih.gov/pmc/articles/PMC10527971/
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Patient derived tumoroids of high grade neuroendocrine neoplasms for more personalized therapies
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      DOI: 10.1038/s41698-024-00549-2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10907580/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma
    1
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      DOI: 10.1158/2767-9764.CRC-23-0341

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    ncbi.nlm.nih.gov/pmc/articles/PMC10911800/
  37. www.sciencedirect.com www.sciencedirect.com
    Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments
    2
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      DOI: 10.1016/j.xcrm.2024.101443

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    2. scibot 01 Mar 2024
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      DOI: 10.1016/j.xcrm.2024.101443

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    sciencedirect.com/science/article/pii/S2666379124000661
  38. Feb 2024
  39. aacrjournals.org aacrjournals.org
    Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA
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    1. scibot 27 Feb 2024
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      DOI: 10.1158/2159-8290.CD-23-0456

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    aacrjournals.org/cancerdiscovery/article/14/1/104/732565/Early-Cancer-Detection-in-Li-Fraumeni-Syndrome
  40. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
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    1. scibot 23 Feb 2024
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      DOI: 10.1158/0008-5472.can-23-1129

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    52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
  41. www.biorxiv.org www.biorxiv.org
    Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance
    1
    1. scibot 09 Feb 2024
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      DOI: 10.1101/2023.12.11.571107

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    biorxiv.org/content/10.1101/2023.12.11.571107v1
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Parkinson’s Disease Risk Enhancers in Microglia
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      DOI: 10.1016/j.isci.2024.108921

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  43. Jan 2024
  44. www.sciencedirect.com www.sciencedirect.com
    Genetic variants affecting NQO1 protein levels impact the efficacy of idebenone treatment in Leber hereditary optic neuropathy
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  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
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  46. aacrjournals.org aacrjournals.org
    Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA
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    aacrjournals.org/cancerdiscovery/article/14/1/104/732565/Early-Cancer-Detection-in-Li-Fraumeni-Syndrome
  47. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
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      DOI: 10.1038/s41588-023-01640-3

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    Recruitment of trimeric eIF2 by phosphatase non-catalytic subunit PPP1R15B
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  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omics integration identifies cell-state-specific repression by PBRM1-PIAS1 cooperation
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    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
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  51. Dec 2023
  52. www.sciencedirect.com www.sciencedirect.com
    SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis
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    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
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  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer
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  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
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  57. 52.53.155.43 52.53.155.43
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  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Is Gauchian genotyping of GBA1 variants reliable?
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  60. Nov 2023
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    A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
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  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Concurrent targeting of HDAC and PI3K to overcome phenotypic heterogeneity of castration-resistant and neuroendocrine prostate cancers
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    Preclinical evidence for the effective use of TL-895, a highly selective and potent second-generation BTK inhibitor, for the treatment of B-cell malignancies
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  64. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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  65. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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  66. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
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    Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Validation of the Clinical Use of GIScar, an Academic-developed Genomic Instability Score Predicting Sensitivity to Maintenance Olaparib for Ovarian Cancer
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  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical and Molecular Features of Long-term Response to Immune Checkpoint Inhibitors in Patients with Advanced Non–Small Cell Lung Cancer
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  70. Oct 2023
  71. www.sciencedirect.com www.sciencedirect.com
    Ancient genomes reveal millet farming-related demic diffusion from the Yellow River into southwest China
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  72. www.biorxiv.org www.biorxiv.org
    Chondrodysplasia-inducing COL2A1 p.Gly1170Ser causes an ER storage defect without associated unfolded protein response in a human cartilage model
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  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Associations between AI-Assisted Tumor Amphiregulin and Epiregulin IHC and Outcomes from Anti-EGFR Therapy in the Routine Management of Metastatic Colorectal Cancer
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  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoantigen targetability in progressive advanced melanoma
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  75. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Immune checkpoint inhibitor-related molecular markers predict prognosis in extrahepatic cholangiocarcinoma
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  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MYCN driven oncogenesis involves cooperation with WDR5 to activate canonical MYC targets and G9a to repress differentiation genes
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  77. 52.53.155.43 52.53.155.43
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  78. www.sciencedirect.com www.sciencedirect.com
    Individualized tumor-informed circulating tumor DNA analysis for postoperative monitoring of non-small cell lung cancer
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  79. www.nature.com www.nature.com
    TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression
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  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Allele-specific regulatory effects on the pig transcriptome
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  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes
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  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
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  83. Sep 2023
  84. www.sciencedirect.com www.sciencedirect.com
    Variation in the CENP-A sequence association landscape across diverse inbred mouse strains
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    Perturbations in 3D genome organization can promote acquired drug resistance
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  86. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
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      DOI: 10.1016/j.ijbiomac.2023.125908

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  87. www.nature.com www.nature.com
    A biobank of pediatric patient-derived-xenograft models in cancer precision medicine trial MAPPYACTS for relapsed and refractory tumors
    1
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  88. Aug 2023
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the yellow mealworm genome
    1
    1. scibot 31 Aug 2023
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      DOI: 10.12688/openreseurope.13987.3

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  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
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    1. scibot 29 Aug 2023
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      DOI: 10.1093/gigascience/giad064

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  91. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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      DOI: 10.1016/j.chom.2021.03.001

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  92. 52.53.155.43 52.53.155.43
    Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function
    2
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  93. 52.53.155.43 52.53.155.43
    ccr-23-1106-html.html
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  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct mechanisms of mismatch repair deficiency delineate two modes of response to PD-1 immunotherapy in endometrial carcinoma
    1
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      DOI: 10.1158/2159-8290.CD-22-0686

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  95. www.sciencedirect.com www.sciencedirect.com
    Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
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  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome resequencing reveals independent domestication and breeding improvement of naked oat
    1
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      DOI: 10.1093/gigascience/giad061

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  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical features associated with outcomes and biomarker analysis of dabrafenib plus trametinib treatment in patients with BRAF-mutant melanoma brain metastases
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  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterizing the Immune Microenvironment and Neoantigen Landscape of Hürthle Cell Carcinoma to Identify Potential Immunologic Vulnerabilities
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      DOI: 10.1158/2767-9764.CRC-23-0120

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  99. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
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    ncbi.nlm.nih.gov/pmc/articles/PMC10377871/
  100. Jul 2023
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
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  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Resolving the pathogenesis of anaplastic Wilms tumors through spatial mapping of cancer cell evolution
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      DOI: 10.1158/1078-0432.CCR-23-0311

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  103. 52.53.155.43 52.53.155.43
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  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
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  105. Jun 2023
  106. www.nature.com www.nature.com
    Extracellular vesicle-associated IGF2BP3 tunes Ewing sarcoma cell migration and affects PI3K/Akt pathway in neighboring cells
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      DOI: 10.1038/s41417-023-00637-8

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  107. link.springer.com link.springer.com
    Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers
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      DOI: 10.1007/s11060-023-04359-7

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  108. dx.doi.org dx.doi.org
    Characterization of Cell-free DNA Size Distribution in Osteosarcoma Patients
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  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
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  110. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical Efficacy and Whole Exome Sequencing of Liquid Biopsies in a Phase IB/II study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor-Positive Breast Cancer
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  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma
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      DOI: 10.1158/1535-7163.MCT-23-0039

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  112. 52.53.155.43 52.53.155.43
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  113. 52.53.155.43 52.53.155.43
    Rare heterozygous loss-of-function variants in the human GLP-1 receptor do not associate with cardiometabolic phenotypes
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  114. May 2023
  115. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
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  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
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  117. www.biorxiv.org www.biorxiv.org
    Transition from Transient DNA Rereplication to Inherited Gene Amplification Following Prolonged Environmental Stress
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      DOI: 10.1101/2023.05.08.539886

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    biorxiv.org/content/10.1101/2023.05.08.539886v1
  118. www.nature.com www.nature.com
    Network analysis reveals a major role for 14q32 cluster miRNAs in determining transcriptional differences between IGHV-mutated and unmutated CLL
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      DOI: 10.1038/s41375-023-01918-9

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  119. www.nature.com www.nature.com
    Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
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      DOI: 10.1038/s41467-023-38271-5

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  120. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Mitogenome evidence shows two radiation events and dispersals of matrilineal ancestry from northern coastal China to the Americas and Japan
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  121. Apr 2023
  122. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Genomic profiles of Indonesian colorectal cancer patients
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      DOI: 10.12688/f1000research.109136.2

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  123. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
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      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  124. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
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      DOI: 10.1093/jhered/esad015

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  125. Mar 2023
  126. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
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      DOI: 10.12688/wellcomeopenres.18868.1

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      DOI: 10.12688/wellcomeopenres.18868.1

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  127. academic.oup.com academic.oup.com
    Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection
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      DOI: 10.1093/gigascience/giad016

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad016/7086661
  128. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
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      DOI: 10.46471/gigabyte.44

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  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
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      DOI: 10.1093/gigascience/giad009

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  130. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
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      DOI: 10.46471/gigabyte.78

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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  131. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
      RRID:SCR_010910

      DOI: 10.46471/gigabyte.71

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  132. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phagocytosis of Glioma Cells Enhances the Immunosuppressive Phenotype of Bone Marrow–Derived Macrophages
    1
    1. scibot 05 Mar 2023
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      DOI: 10.1158/0008-5472.CAN-22-1570

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    ncbi.nlm.nih.gov/pmc/articles/PMC9978884/
  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated, Longitudinal Analysis of Cell-free DNA in Uveal Melanoma
    1
    1. scibot 04 Mar 2023
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      DOI: 10.1158/2767-9764.CRC-22-0456

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    ncbi.nlm.nih.gov/pmc/articles/PMC9973415/
  134. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.6

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new and improved genome sequence of Cannabis sativa
    1
    1. scibot 02 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC9632002/
  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.34

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
    1
    1. scibot 02 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631953/
  138. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_010910

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632003/
  139. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.4

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632040/
  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.47

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650251/
  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.40

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  142. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340
    1
    1. scibot 02 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694154/
  143. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
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      DOI: 10.1093/jhered/esad003

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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
    1
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      DOI: 10.3389/fmicb.2023.1109881

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    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  145. Feb 2023
  146. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
    1. scibot 23 Feb 2023
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      DOI: 10.1093/gigascience/giad005

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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  147. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
    1. scibot 16 Feb 2023
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      DOI: 10.1016/j.ygeno.2023.110582

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    sciencedirect.com/science/article/pii/S0888754323000265
  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia
    1
    1. scibot 09 Feb 2023
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      DOI: 10.1158/2643-3230.BCD-21-0160

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    ncbi.nlm.nih.gov/pmc/articles/PMC9780084/
  149. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
    1
    1. scibot 08 Feb 2023
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      DOI: 10.1093/gigascience/giad003

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  150. academic.oup.com academic.oup.com
    Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria
    1
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      DOI: 10.1093/nar/gkad003

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    academic.oup.com/nar/advance-article/doi/10.1093/nar/gkad003/7009119
  151. Jan 2023
  152. www.nature.com www.nature.com
    Germline rare deleterious variant load alters cancer risk, age of onset and tumor characteristics
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    1. scibot 31 Jan 2023
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      DOI: 10.1038/s41698-023-00354-3

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    nature.com/articles/s41698-023-00354-3
  153. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
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    1. scibot 31 Jan 2023
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      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  154. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome Reporting for Healthy Populations—Pipeline for Genomic Screening from the GENCOV COVID‐19 Study
    1
    1. scibot 28 Jan 2023
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      DOI: 10.1002/cpz1.534

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    ncbi.nlm.nih.gov/pmc/articles/PMC9874607/
  155. www.sciencedirect.com www.sciencedirect.com
    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
    1
    1. scibot 26 Jan 2023
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      DOI: 10.1016/j.molcel.2023.01.004

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    sciencedirect.com/science/article/pii/S1097276523000047
  156. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
    1
    1. scibot 25 Jan 2023
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      DOI: 10.1158/2767-9764.crc-22-0124

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    ncbi.nlm.nih.gov/pmc/articles/PMC9853917/
  157. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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    1. scibot 20 Jan 2023
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      DOI: 10.1101/2023.01.10.523438

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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  158. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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      DOI: 10.1158/2159-8290.CD-22-0489

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  159. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating Tumor DNA in Stage III Colorectal Cancer, beyond Minimal Residual Disease Detection, toward Assessment of Adjuvant Therapy Efficacy and Clinical Behavior of Recurrences
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    1. scibot 12 Jan 2023
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      DOI: 10.1158/1078-0432.CCR-21-2404

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  160. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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    1. scibot 10 Jan 2023
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      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  161. Dec 2022
  162. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cultural and demic co-diffusion of Tubo Empire on Tibetan Plateau
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      DOI: 10.1016/j.isci.2022.105636

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    ncbi.nlm.nih.gov/pmc/articles/PMC9792914/
  163. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
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    1. scibot 30 Dec 2022
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      DOI: 10.1093/gigascience/giac112

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    ncbi.nlm.nih.gov/pmc/articles/PMC9795480/
  164. www.sciencedirect.com www.sciencedirect.com
    Protocol to analyze population structure and migration history based on human genome variation data
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      DOI: 10.1016/j.xpro.2022.101928

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    sciencedirect.com/science/article/pii/S2666166722008085
  165. aacrjournals.org aacrjournals.org
    BAF complex maintains glioma stem cells in pediatric H3K27M-glioma
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      DOI: 10.1158/2159-8290.CD-21-1491

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    aacrjournals.org/cancerdiscovery/article/12/12/2880/711164/BAF-Complex-Maintains-Glioma-Stem-Cells-in
  166. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells
    1
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      DOI: 10.1016/j.isci.2022.105571

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  167. Nov 2022
  168. www.sciencedirect.com www.sciencedirect.com
    Transcription factor antagonism regulates heterogeneity in embryonic stem cell states
    1
    1. scibot 10 Nov 2022
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      DOI: 10.1016/j.molcel.2022.10.022

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    sciencedirect.com/science/article/pii/S109727652201022X
  169. academic.oup.com academic.oup.com
    Selection signatures in goats reveal a novel deletion mutant underlying cashmere yield and diameter
    1
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      DOI: 10.1093/gigascience/giac107

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac107/6795292
  170. www.sciencedirect.com www.sciencedirect.com
    Selective advantage of epigenetically disrupted cancer cells via phenotypic inertia
    1
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      DOI: 10.1016/j.ccell.2022.10.002

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    sciencedirect.com/science/article/pii/S1535610822004937
  171. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
    1
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      DOI: 10.1158/0008-5472.CAN-22-0671

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    ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
  172. Oct 2022
  173. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiomic characterization and drug testing establish circulating tumor cells as an ex vivo tool for personalized medicine
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      DOI: 10.1016/j.isci.2022.105081

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  174. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004222013530-main-html.html
    1
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      DOI: 10.1016/j.isci.2022.105081

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  175. Sep 2022
  176. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic Diversity and Selective Signature in Dabieshan Cattle Revealed by Whole-Genome Resequencing
    1
    1. scibot 24 Sep 2022
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  177. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
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      DOI: 10.1093/gbe/evac132

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  178. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
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      DOI: 10.1093/gigascience/giac085

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  179. link.springer.com link.springer.com
    Correction to: Hepatitis, testicular degeneration, and ataxia in DIDO3-deficient mice with altered mRNA processing
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  180. Aug 2022
  181. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The DCMU Herbicide Shapes T-cell Functions By Modulating Micro-RNA Expression Profiles
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  182. www.sciencedirect.com www.sciencedirect.com
    The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants
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    sciencedirect.com/science/article/pii/S2211124722010531
  183. aacrjournals.org aacrjournals.org
    Developmental pathways are epigenetically reprogrammed during lung cancer brain metastasis
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    aacrjournals.org/cancerres/article/82/15/2692/707331/Developmental-Pathways-Are-Epigenetically
  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome
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  185. Jul 2022
  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
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  187. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
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  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies
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  189. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
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    sciencedirect.com/science/article/pii/S2211124722008415
  190. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Novel RSPH4A Variants Associated With Primary Ciliary Dyskinesia–Related Infertility in Three Chinese Families
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  191. www.sciencedirect.com www.sciencedirect.com
    Volatile profiles of commercial vetch prepared via different processing methods
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  192. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoadjuvant chemotherapy induces genomic and transcriptomic changes in ovarian cancer
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  193. academic.oup.com academic.oup.com
    Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
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      DOI: 10.1093/gigascience/giac057

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  194. www.sciencedirect.com www.sciencedirect.com
    Bacteria reduce flagellin synthesis to evade microglia-astrocyte-driven immunity in the brain
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  195. Jun 2022
  196. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinicopathologic Characteristics of Grade 2/3 Meningiomas: A Perspective on the Role of Next-Generation Sequencing
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  197. aacrjournals.org aacrjournals.org
    Quantification of neoantigen-mediated immunoediting in cancer evolution
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    aacrjournals.org/cancerres/article/82/12/2226/699353/Quantification-of-Neoantigen-Mediated
  198. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree
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      DOI: 10.1093/gigascience/giac042

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  199. aacrjournals.org aacrjournals.org
    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
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    aacrjournals.org/cancerrescommun/article/2/6/402/699311/Cancer-Stem-Cells-not-Bulk-Tumor-Cells-Determine
  200. aacrjournals.org aacrjournals.org
    Predictive markers of response to neoadjuvant durvalumab with nab-paclitaxel and dose dense doxorubicin/cyclophosphamide in basal-like triple negative breast cancer
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  201. elifesciences.org elifesciences.org
    Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
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      DOI: 10.7554/eLife.66909

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  202. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
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      DOI: 10.1093/gigascience/giac039

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  203. May 2022
  204. academic.oup.com academic.oup.com
    Chromosome‐level genome assembly of the black widow spider Latrodectus elegans illuminates composition and evolution of venom and silk proteins
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      DOI: 10.1093/gigascience/giac049

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  205. f1000research.com f1000research.com
    F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
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      DOI: 10.12688/f1000research.110194.1

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  206. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The assembled and annotated genome of the masked palm civet (Paguma larvata)
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      DOI: 10.1093/gigascience/giac041

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  207. www.researchsquare.com www.researchsquare.com
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      DOI: 10.21203/rs.3.rs-658360/v1

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  208. aacrjournals.org aacrjournals.org
    Single cell characterization of the cellular landscape of acral melanoma identifies novel targets for immunotherapy
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      DOI: 10.1158/1078-0432.CCR-21-3145

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  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mitochondrial DNA Consensus Calling and Quality Filtering for Constructing Ancient Human Mitogenomes: Comparison of Two Widely Applied Methods
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      DOI: 10.3390/ijms23094651

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  210. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
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      DOI: 10.46471/gigabyte.51

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  211. aacrjournals.org aacrjournals.org
    A Phenogenetic Axis that Modulates Clinical Manifestation and Predicts Treatment Outcome in Primary Myeloid NeoplasmsLandscape of Myeloid Neoplasms in a Chinese Cohort
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  212. Apr 2022
  213. f1000research.com f1000research.com
    F1000Research Article: Genomic profiles of Indonesian colorectal cancer patients.
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      DOI: 10.12688/f1000research.109136.1

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  214. link.springer.com link.springer.com
    Four novel mutations in the androgen receptor gene from Vietnamese patients with androgen insensitivity syndrome
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      DOI: 10.1007/s13258-022-01249-6

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  215. aacrjournals.org aacrjournals.org
    Bone marrow surveillance of pediatric cancer survivors identifies clones that predict therapy-related leukemia
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  216. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Elevated MACC1 Expression in Colorectal Cancer Is Driven by Chromosomal Instability and Is Associated with Molecular Subtype and Worse Patient Survival
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  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Latent TGFβ-binding proteins 1 and 3 protect the larval zebrafish outflow tract from aneurysmal dilatation
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  218. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl
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  219. www.sciencedirect.com www.sciencedirect.com
    Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease
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      DOI: 10.1016/j.stem.2022.03.003

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