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C-X-C motif chemokine ligand 13 suppresses osteoclast differentiation via interference with RANKL–RANK interaction

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1. scibot 28 Jan 2026
  
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  DOI: 10.3389/fimmu.2025.1729222
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12827643/
Jan 2026
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Cannabidiol suppresses emergency MDSCs generation by disturbing EEF1B2-mediated C/EBPβ protein synthesis in colorectal adenomas

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1. scibot 16 Jan 2026
  
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  DOI: 10.1136/jitc-2025-013081
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12766802/
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PDZRN4 suppresses lung adenocarcinoma progression via inhibiting ubiquitin-mediated HIF-1A degradation

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1. scibot 06 Jan 2026
  
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  DOI: 10.1038/s41388-025-03670-z
  
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nature.com/articles/s41388-025-03670-z
Oct 2025
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Reduced cell-substrate adhesion formation promotes cell migration in Dictyostelium

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1. scibot 29 Oct 2025
  
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  DOI: 10.1091/mbc.E25-05-0230
  
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molbiolcell.org/doi/10.1091/mbc.E25-05-0230
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The Myo2 adaptor Ldm1 and its receptor Ldo16 mediate actin-dependent lipid droplet motility

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1. scibot 28 Oct 2025
  
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  DOI: 10.1016/j.celrep.2025.116475
  
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sciencedirect.com/science/article/pii/S221112472501246X
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Somatic evolution of prostate cancer: mutation, selection, and epistasis across disease stages

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1. scibot 07 Oct 2025
  
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  DOI: 10.1101/2025.09.25.678387
  
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biorxiv.org/content/10.1101/2025.09.25.678387v1
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Proteome mining of Yersinia Enterocolitica for drug targets and computational inhibitor identification with ADMET, anti-inflammation potential and formulation characteristics

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1. scibot 02 Oct 2025
  
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  DOI: 10.1186/s13040-025-00482-5
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12482588/
Sep 2025
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Repurposing rupatadine as topical treatment against methicillin-resistant Staphylococcus aureus

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1. scibot 27 Sep 2025
  
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  DOI: 10.1186/s13568-025-01947-w
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12457276/
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Bacterial anti-toxin HigA dysregulates host intestinal serotonin homeostasis in a T6SS-dependent manner

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1. scibot 03 Sep 2025
  
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  DOI: 10.1016/j.celrep.2025.116212
  
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sciencedirect.com/science/article/pii/S2211124725009830
Aug 2025
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Sequence- and structure-based bioinformatic screening for potential Theileria parva transport-related proteins

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1. scibot 30 Aug 2025
  
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  DOI: 10.1016/j.compbiolchem.2025.108653
  
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sciencedirect.com/science/article/pii/S1476927125003147
faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com

Rationally Designed Functionalized Phytochemical-Conjugated Fullerene Quantum Dots Inhibiting Viral Chaperone Activity and RNA-Dependent RNA Polymerase in Nipah Virus

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1. scibot 05 Aug 2025
  
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  DOI: 10.1096/fj.202501100R
  
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faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202501100R
Jul 2025
52.53.155.43 52.53.155.43

bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html

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1. scibot 29 Jul 2025
  
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  DOI: 10.6084/m9.figshare.29361725.v1
  
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52.53.155.43/71efcdc483a88b8314a69385c8ba7fc2816578e0/bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html
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SeaMoon: From protein language models to continuous structural heterogeneity

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1. scibot 19 Jul 2025
  
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  DOI: 10.1016/j.str.2025.06.010
  
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sciencedirect.com/science/article/pii/S0969212625002448
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Monoallelic mutations in MMD2 cause autosomal dominant aggressive periodontitis

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1. scibot 17 Jul 2025
  
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  DOI: 10.1084/jem.20231911
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12262042/
Jun 2025
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Molecular Docking, Phytochemical Screening and Evaluation of Balliospermum montanum Roots for its Antihyperlipidemic Potential

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1. scibot 17 Jun 2025
  
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  DOI: 10.1007/s12013-025-01790-7
  
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link.springer.com/article/10.1007/s12013-025-01790-7
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PDF-html.html

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1. scibot 15 Jun 2025
  
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  DOI: 10.1101/2024.03.19.585764
  
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52.53.155.43/e04e74c2598ab754b1f531f62f1399ba435a74bd/PDF-html.html
Apr 2025
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Identification of a TNIK-CDK9 Axis as a Targetable Strategy for Platinum-Resistant Ovarian Cancer

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1. scibot 04 Apr 2025
  
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  DOI: 10.1158/1535-7163.MCT-24-0785
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11962390/
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Genetically encoded reporters of actin filament organization in living cells and tissues

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1. scibot 03 Apr 2025
  
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  DOI: 10.1016/j.cell.2025.03.003
  
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sciencedirect.com/science/article/pii/S0092867425002764
Mar 2025
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23ME-01473, an Fc Effector–Enhanced Anti-ULBP6/2/5 Antibody, Restores NK Cell–Mediated Antitumor Immunity through NKG2D and FcγRIIIa Activation

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1. scibot 27 Mar 2025
  
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  DOI: 10.1158/2767-9764.CRC-24-0478
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11927390/
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Sporophyte-directed gametogenesis in Arabidopsis

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1. scibot 25 Mar 2025
  
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  DOI: 10.1038/s41477-025-01932-y
  
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nature.com/articles/s41477-025-01932-y
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Lineage-Specific Class-A GPCR Dynamics Reflect Diverse Chemosensory Adaptations in Lophotrochozoa

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1. scibot 13 Mar 2025
  
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  DOI: 10.1093/molbev/msaf042
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11886862/
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A comprehensive study on the impact of Ligustrum vicaryi L. fruit polysaccharide on myocardial fibrosis through animal experiments, network pharmacology and molecular docking

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1. scibot 08 Mar 2025
  
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  DOI: 10.3389/fcvm.2025.1470761
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11882575/
Jan 2025
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Structure of WzxE the lipid III flippase for Enterobacterial Common Antigen polysaccharide

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1. scibot 09 Jan 2025
  
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  RRID:SCR_012820
  
  DOI: 10.1098/rsob.240310
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11706664/
Dec 2024
52.53.155.43 52.53.155.43

PDF-html.html

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1. scibot 27 Dec 2024
  
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  DOI: 10.1101/2024.12.23.630054
  
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52.53.155.43/7ccb4c5104f3067c66d81bce354f2a4cf02941b2/PDF-html.html
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Nanobodies against the myelin enzyme CNPase as tools for structural and functional studies

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1. scibot 13 Dec 2024
  
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  RRID:SCR_012820
  
  DOI: 10.1111/jnc.16274
  
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onlinelibrary.wiley.com/doi/10.1111/jnc.16274
Nov 2024
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In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV-2 S-glycoprotein and the ACE2 receptor

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1. scibot 07 Nov 2024
  
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  RRID:SCR_012820
  
  DOI: 10.12688/f1000research.131508.2
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11519612/
Sep 2024
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β-chitosan attenuates hepatic macrophage-driven inflammation and reverses aging-related cognitive impairment

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1. scibot 25 Sep 2024
  
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  DOI: 10.1016/j.isci.2024.110766
  
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sciencedirect.com/science/article/pii/S2589004224019916
Aug 2024
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A Complex Interplay Between Melatonin and RORβ: RORβ is Unlikely a Putative Receptor for Melatonin as Revealed by Biophysical Assays

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1. scibot 20 Aug 2024
  
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  DOI: 10.1007/s12035-024-04395-y
  
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The Development of an Automated Computational Workflow to Prioritize Potential Resistance Variants.

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1. scibot 18 Aug 2024
  
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  DOI: 10.22541/au.172114480.03196251/v1
  
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52.53.155.43/a5f2a18497e8c38643b8230fda89f923d68c20e8/1191591-html.html
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Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions

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1. scibot 13 Aug 2024
  
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  DOI: 10.1016/j.celrep.2024.114601
  
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sciencedirect.com/science/article/pii/S2211124724009409
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Symmetrical Bispyridinium Compounds Act as Open Channel Blockers of Cation-Selective Ion Channels

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1. scibot 02 Aug 2024
  
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  DOI: 10.1021/acsptsci.3c00308
  
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pubs.acs.org/doi/10.1021/acsptsci.3c00308
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Supplemental_Materials (1)-html.html

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1. scibot 02 Aug 2024
  
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  DOI: 10.2337/figshare.21183496
  
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52.53.155.43/d88ad76d933f2aaeca09b3b316a302f76c99bbf1/Supplemental_Materials (1)-html.html
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Spooky nameless page

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1. scibot 02 Aug 2024
  
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  DOI: 10.52711/2231-5691.2022.00043
  
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They all rock: A systematic comparison of conformational movements in LeuT-fold transporters

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The Development of an Automated Computational Workflow to Prioritize Potential Resistance Variants.

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Evolutionary Dynamics of Lineage-Specific Class-A GPCR Subsets Reveal Widespread Chemosensory Roles and Adaptations in Lophotrochozoa

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Developing potential drugs for insomnia through computational analysis

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TNFRSF19 within the 13q12.12 risk locus functions as a lung cancer suppressor by binding Wnt3a to inhibit Wnt/β-catenin signaling.

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Developing potential drugs for insomnia through computational analysis

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The role of genetic polymorphisms in the sulfation of pregnenolone by human cytosolic sulfotransferase SULT2B1a

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Feb 2024
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d4-html.html

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Integrating Network Pharmacology and Experimental Verification to Explore the Pharmacological Mechanisms of Radix Paeoniae Rubra Against Glioma

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  DOI: 10.1007/s12010-024-04887-6
  
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<i>In silico</i> drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV-2 S-glycoprotein and the ACE2 receptor

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  DOI: 10.12688/f1000research.131508.1
  
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The role of genetic polymorphisms in the sulfation of pregnenolone by human cytosolic sulfotransferase SULT2B1a

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  DOI: 10.21203/rs.3.rs-3471389/v1
  
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Myelin abnormalities in merosin-deficient congenital muscular dystrophy

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  DOI: 10.1002/mus.28002
  
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Oct 2023
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Evolution and functional role prediction of the CYP6DE and CYP6DJ subfamilies in Dendroctonus (Curculionidae: Scolytinae) bark beetles

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  DOI: 10.3389/fmolb.2023.1274838
  
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Developing potential drugs for insomnia through computational analysis

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  DOI: 10.12688/f1000research.135151.1
  
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Virtual Screening, Molecular Docking, and Dynamic Simulations Revealed TGF-β1 Potential Inhibitors to Curtail Cervical Cancer Progression

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  DOI: 10.1007/s12010-023-04608-5
  
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F1000Research Article: Pharmacokinetic and pharmacodynamic profiling of compounds similar to paracetamol from zinc database: an <i>in silico</i> analysis.

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  DOI: 10.12688/f1000research.133839.1
  
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3D-informed targeting of the Trop-2 signal-activation site drives selective cancer vulnerability

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  DOI: 10.1158/1535-7163.MCT-22-0352
  
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aacrjournals.org/mct/article/22/6/790/726548/3D-Informed-Targeting-of-the-Trop-2-Signal
May 2023
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The genomic landscape of sensitivity to arsenic trioxide uncovered by genome-wide CRISPR-Cas9 screening

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  DOI: 10.3389/fonc.2023.1178686
  
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Bacterial NLR-related proteins protect against phage

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  DOI: 10.1016/j.cell.2023.04.015
  
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  DOI: 10.1016/j.cell.2023.04.015
  
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Apr 2023
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A new approach for extracting information from protein dynamics

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  DOI: 10.1002/prot.26421
  
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Mar 2023
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New biochemistry in the Rhodanese-phosphatase superfamily: emerging roles in diverse metabolic processes, nucleic acid modifications, and biological conflicts

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  DOI: 10.1093/nargab/lqad029
  
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Structures of NF-κB p52 homodimer-DNA complexes rationalize binding mechanisms and transcription activation

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  DOI: 10.7554/eLife.86258
  
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Jan 2023
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β-glucan protects against necrotizing enterocolitis in mice by inhibiting intestinal inflammation, improving the gut barrier, and modulating gut microbiota

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  DOI: 10.1186/s12967-022-03866-x
  
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Aug 2022
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Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins

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  DOI: 10.1016/j.xpro.2022.101648
  
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Jun 2022
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Prediction of the effects of the top 10 nonsynonymous variants from 30229 SARS-CoV-2 strains on their proteins

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  DOI: 10.12688/f1000research.72904.2
  
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Mussel-inspired monomer – A new selective protease inhibitor against dentine collagen degradation

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  DOI: 10.1016/j.dental.2022.05.002
  
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Jan 2022
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Novel variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability in Iranian consanguineous families

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F1000Research Article: Prediction of the Effects of Nonsynonymous Variants on SARS-CoV-2 Proteins.

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  DOI: 10.12688/f1000research.72904.1
  
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f1000research.com/articles/11-9
Nov 2021
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Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs

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  DOI: 10.1016/j.molcel.2021.10.018
  
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Oct 2021
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Cheonggukjang-Specific Component 1,3-Diphenyl-2-Propanone as a Novel PPARα/γ Dual Agonist: An In Vitro and In Silico Study

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Expression and distribution of synaptotagmin family members in the zebrafish retina

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Simulating PIP2-Induced Gating Transitions in Kir6.2 Channels

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Reconstitution of the destruction complex defines roles of AXIN polymers and APC in β-catenin capture, phosphorylation, and ubiquitylation

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Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases

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Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase

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Tryptophan Improves Memory Independent of Its Role as a Serotonin Precursor: Potential Involvement of Microtubule Proteins

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The AAA ATPase Vps4 binds ESCRT-III substrates through a repeating array of dipeptide-binding pockets.

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Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data

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Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)

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Repurposing of synaptonemal complex proteins for kinetochores in Kinetoplastida

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BPS Publications

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The endogenous galactofuranosidase GlfH1 hydrolyzes mycobacterial arabinogalactan

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Dental workers in front-line of COVID-19: an in silico evaluation targeting their prevention

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Integrative identification of the pathogenic role of a novel G6PD missense mutation c.697G>C

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Arctigenin protects against depression by inhibiting microglial activation and neuroinflammation via HMGB1/TLR4/NF‐κB and TNF‐α/TNFR1/NF‐κB pathways

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Adeno-associated virus-binding antibodies detected in cats living in the Northeastern United States lack neutralizing activity

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Conformational stability of the bacterial adhesin, FimH, with an inactivating mutation

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Molecular analysis of a fibrin-degrading enzyme from Bacillus subtilis K2 isolated from the Indonesian soybean-based fermented food moromi

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Structure of RNA polymerase bound to ribosomal 30S subunit

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Genetic variation regulates opioid-induced respiratory depression in mice

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Adeno-associated virus-binding antibodies detected in cats living in the Northeastern United States lack neutralizing activity

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The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

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The high genetic barrier of EFdA/MK-8591 stems from strong interactions with the active site of drug-resistant HIV-1 reverse transcriptase

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Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement

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Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)

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2. scibot 05 Apr 2019
  
  in Public
  
  nif-0000-00135
  
  Curator: @jcabotaj
  
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ncbi.nlm.nih.gov/pmc/articles/PMC3961105
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology

1
1. scibot 05 Apr 2019
  
  in Public
  
  nif-0000-00135
  
  Curator: @jcabotaj
  
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ncbi.nlm.nih.gov/pmc/articles/PMC4456863/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Evidence from molecular dynamics simulations of conformational preorganization in the ribonuclease H active site

1
1. scibot 05 Apr 2019
  
  in Public
  
  nif-0000-00135
  
  Curator: @gabimpine
  
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ncbi.nlm.nih.gov/pmc/articles/PMC4032109
Nov 2018
onlinelibrary.wiley.com onlinelibrary.wiley.com

Untitled document

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1. scibot 05 Nov 2018
  
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  RRID:SCR_012820
  
  Curator: @Jmenke
  
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onlinelibrary.wiley.com/doi/full/10.1111/jnc.14322
europepmc.org europepmc.org

Untitled document

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europepmc.org/articles/PMC5644950/
Nov 2017
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

1
1. scibot 08 Nov 2017
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5655137/
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Untitled document

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1. scibot 08 Nov 2017
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5644950/
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Single-protein detection in crowded molecular environments in cryo-EM images

1
1. scibot 08 Nov 2017
  
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  SCR_012820
  
  Curator: @gabimpine
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5453696/
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Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase

1
1. scibot 08 Nov 2017
  
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  SCR_012820
  
  Curator: @kaitlinsung
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5413351/
elifesciences.org elifesciences.org

Mechanism of ribosome rescue by ArfA and RF2

1
1. scibot 08 Nov 2017
  
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  SCR_012820
  
  Curator: @kaitlinsung
  
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elifesciences.org/content/6/e23687
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Region 4 of Rhizobium etli Primary Sigma Factor (SigA) Confers Transcriptional Laxity in Escherichia coli

1
1. scibot 08 Nov 2017
  
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  SCR_012820
  
  Curator: @chewbeccax
  
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ncbi.nlm.nih.gov/pmc/articles/PMC4943231/
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Origin of a folded repeat protein from an intrinsically disordered ancestor

1
1. scibot 08 Nov 2017
  
  in Public
  
  SCR_012820
  
  Curator: @gabimpine
  
  Resource used:
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5074805/
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Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

1
1. scibot 08 Nov 2017
  
  in Public
  
  SCR_012820
  
  Curator: @gabimpine
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5025611/

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