Hypothesis

30 Matching Annotations

Jul 2025
52.53.155.43 52.53.155.43

bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html

1
1. scibot 29 Jul 2025
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.6084/m9.figshare.29361725.v1
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

52.53.155.43/71efcdc483a88b8314a69385c8ba7fc2816578e0/bilinovich-et-al-2025-methyl-cpg-binding-domain-as-a-protein-interaction-partner-in-promoter-regulation-and-html.html
www.sciencedirect.com www.sciencedirect.com

Structural serology of polyclonal antibody responses to mRNA-1273 and NVX-CoV2373 COVID-19 vaccines

1
1. scibot 09 Jul 2025
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.celrep.2025.115986
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S2211124725007570
Apr 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Phased high-quality genome of the gymnosperm Himalayan Yew assists in paclitaxel pathway exploration

1
1. scibot 08 Apr 2025
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1093/gigascience/giaf026
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

pmc.ncbi.nlm.nih.gov/articles/PMC11970372/
Jan 2025
52.53.155.43 52.53.155.43

pdf-html.html

1
1. scibot 10 Jan 2025
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1085/jgp.202413658
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

52.53.155.43/c4b4123d391d07d10a2413d599331feb3e0a7994/pdf-html.html
Sep 2024
www.sciencedirect.com www.sciencedirect.com

Assessing AF2’s ability to predict structural ensembles of proteins

1
1. scibot 27 Sep 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.str.2024.09.001
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0969212624003708
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Neck linker docking is critical for Kinesin-1 force generation in cells but at a cost to motor speed and processivity

1
1. scibot 25 Sep 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.44146
  
  Resource: AMBER (RRID:SCR_016151)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_016151
  
  Curator comments: Amber
  
  What is this?
  
  RRID:SCR_016151 RRID:SCR_014230 RRIDCUR:Incorrect
Visit annotations in context

Tags

RRIDCUR:Incorrect

RRID:SCR_014230

RRID:SCR_016151

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC6533058/
Aug 2024
www.sciencedirect.com www.sciencedirect.com

Engineering of pH-dependent antigen binding properties for toxin-targeting IgG1 antibodies using light-chain shuffling

1
1. scibot 21 Aug 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.str.2024.07.014
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0969212624002776
Apr 2024
www.sciencedirect.com www.sciencedirect.com

Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses

1
1. scibot 26 Apr 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.immuni.2024.03.022
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S1074761324001432
Mar 2024
www.sciencedirect.com www.sciencedirect.com

ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat

2
1. scibot 15 Mar 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.cell.2024.02.013
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
2. scibot 15 Mar 2024
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.cell.2024.02.013
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S009286742400179X
Sep 2023
www.sciencedirect.com www.sciencedirect.com

A NRF2 inhibitor selectively sensitizes KEAP1 mutant tumor cells to cisplatin and gefitinib by restoring NRF2-inhibitory function of KEAP1 mutants

1
1. scibot 14 Sep 2023
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.celrep.2023.113104
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S2211124723011154
May 2023
www.sciencedirect.com www.sciencedirect.com

Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation

1
1. scibot 04 May 2023
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.xpro.2023.102263
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S2666166723002216
Nov 2021
www.sciencedirect.com www.sciencedirect.com

Paratope states in solution improve structure prediction and docking

1
1. scibot 30 Nov 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.str.2021.11.001
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0969212621004135
Aug 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Bridging the 12-6-4 Model and the Fluctuating Charge Model

1
1. scibot 15 Aug 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.3389/fchem.2021.721960
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8339297/
www.sciencedirect.com www.sciencedirect.com

Untitled document

1
1. scibot 10 Aug 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.chembiol.2018.11.010
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S245194561830432X
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

1
1. scibot 30 Jul 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.40889
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Validated
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC6133551/
Jun 2021
elifesciences.org elifesciences.org

Pore mutation N617D in the skeletal muscle DHPR blocks Ca2+ influx due to atypical high-affinity Ca2+ binding

1
1. scibot 11 Jun 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.63435
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

elifesciences.org/articles/63435
May 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Structural determinants of voltage-gating properties in calcium channels

1
1. scibot 12 May 2021
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.64087
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8099428/
Oct 2020
elifesciences.org elifesciences.org

Allosteric mechanism for KCNE1 modulation of KCNQ1 potassium channel activation

1
1. scibot 31 Oct 2020
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.57680
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

elifesciences.org/articles/57680
www.sciencedirect.com www.sciencedirect.com

Polyreactive Broadly Neutralizing B cells Are Selected to Provide Defense against Pandemic Threat Influenza Viruses

1
1. scibot 29 Oct 2020
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1016/j.immuni.2020.10.005
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S1074761320304465
Sep 2020
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

BPS Publications

1
1. scibot 17 Sep 2020
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1111/bph.15076
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15076
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Structural basis for the activation of PLC-γ isozymes by phosphorylation and cancer-associated mutations

1
1. scibot 03 Sep 2020
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.7554/eLife.51700
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC7004563/
Jan 2020
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

BPS Publications

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_014230
  
  DOI: 10.1111/bph.14698
  
  Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_014230
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Validated
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/bph.14698
Nov 2018
www.sciencedirect.com www.sciencedirect.com

Homologous Lympho-Epithelial Kazal-type Inhibitor Domains Delay Blood Coagulation by Inhibiting Factor X and XI with Differential Specificity

1
1. scibot 05 Nov 2018
  
  in Public
  
  RRID:SCR_014230
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0969212618302053
www.sciencedirect.com www.sciencedirect.com

Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance

1
1. scibot 05 Nov 2018
  
  in Public
  
  AMBER
  
  Curator: @Jmenke
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Missing
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Missing

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S1097276517307153
europepmc.org europepmc.org

Malaria parasite LIMP protein regulates sporozoite gliding motility and infectivity in mosquito and mammalian hosts.

1
1. scibot 05 Nov 2018
  
  in Public
  
  RRID:SCR_014230
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230
Visit annotations in context

Tags

RRID:SCR_014230

Annotators

scibot

URL

europepmc.org/articles/PMC5438254/
Nov 2017
www.sciencedirect.com www.sciencedirect.com

A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential

1
1. scibot 08 Nov 2017
  
  in Public
  
  RRID:SCR_014230
  
  Curator: @Jmenke
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Validated
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Validated

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0092867417310516
www.sciencedirect.com www.sciencedirect.com

Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket

1
1. scibot 08 Nov 2017
  
  in Public
  
  Amber14
  
  Curator: @chewbeccax
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Missing
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Missing

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0092867416313800
www.sciencedirect.com www.sciencedirect.com

Mechanism of Substrate Translocation in an Alternating Access Transporter

1
1. scibot 08 Nov 2017
  
  in Public
  
  AMBER
  
  Curator: @kaitlinsung
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Missing
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Missing

Annotators

scibot

URL

sciencedirect.com/science/article/pii/S0092867417302891
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)

1
1. scibot 08 Nov 2017
  
  in Public
  
  AMBER 9
  
  Curator: @jcabotaj
  
  Resource used:
  
  (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)
  
  SciCrunch record: RRID:SCR_014230
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:SCR_014230 RRIDCUR:Missing
Visit annotations in context

Tags

RRID:SCR_014230

RRIDCUR:Missing

Annotators

scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC3961105