26 Matching Annotations
  1. Sep 2024
  2. www.sciencedirect.com www.sciencedirect.com
    Assessing AF2’s ability to predict structural ensembles of proteins
    1
    1. scibot 27 Sep 2024
      RRID:SCR_014230

      DOI: 10.1016/j.str.2024.09.001

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0969212624003708
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neck linker docking is critical for Kinesin-1 force generation in cells but at a cost to motor speed and processivity
    1
    1. scibot 25 Sep 2024
      RRID:SCR_014230

      DOI: 10.7554/eLife.44146

      Resource: AMBER (RRID:SCR_016151)

      Curator: @evieth

      SciCrunch record: RRID:SCR_016151

      Curator comments: Amber

      What is this?
      RRID:SCR_016151 RRID:SCR_014230 RRIDCUR:Incorrect
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6533058/
  4. Aug 2024
  5. www.sciencedirect.com www.sciencedirect.com
    Engineering of pH-dependent antigen binding properties for toxin-targeting IgG1 antibodies using light-chain shuffling
    1
    1. scibot 21 Aug 2024
      RRID:SCR_014230

      DOI: 10.1016/j.str.2024.07.014

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0969212624002776
  6. Apr 2024
  7. www.sciencedirect.com www.sciencedirect.com
    Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses
    1
    1. scibot 26 Apr 2024
      RRID:SCR_014230

      DOI: 10.1016/j.immuni.2024.03.022

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S1074761324001432
  8. Mar 2024
  9. www.sciencedirect.com www.sciencedirect.com
    ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat
    2
    1. scibot 15 Mar 2024
      RRID:SCR_014230

      DOI: 10.1016/j.cell.2024.02.013

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    2. scibot 15 Mar 2024
      RRID:SCR_014230

      DOI: 10.1016/j.cell.2024.02.013

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S009286742400179X
  10. Sep 2023
  11. www.sciencedirect.com www.sciencedirect.com
    A NRF2 inhibitor selectively sensitizes KEAP1 mutant tumor cells to cisplatin and gefitinib by restoring NRF2-inhibitory function of KEAP1 mutants
    1
    1. scibot 14 Sep 2023
      RRID:SCR_014230

      DOI: 10.1016/j.celrep.2023.113104

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2211124723011154
  12. May 2023
  13. www.sciencedirect.com www.sciencedirect.com
    Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation
    1
    1. scibot 04 May 2023
      RRID:SCR_014230

      DOI: 10.1016/j.xpro.2023.102263

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2666166723002216
  14. Nov 2021
  15. www.sciencedirect.com www.sciencedirect.com
    Paratope states in solution improve structure prediction and docking
    1
    1. scibot 30 Nov 2021
      RRID:SCR_014230

      DOI: 10.1016/j.str.2021.11.001

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0969212621004135
  16. Aug 2021
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Bridging the 12-6-4 Model and the Fluctuating Charge Model
    1
    1. scibot 15 Aug 2021
      RRID:SCR_014230

      DOI: 10.3389/fchem.2021.721960

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8339297/
  18. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 10 Aug 2021
      RRID:SCR_014230

      DOI: 10.1016/j.chembiol.2018.11.010

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S245194561830432X
  19. Jul 2021
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 30 Jul 2021
      RRID:SCR_014230

      DOI: 10.7554/eLife.40889

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @evieth

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230 RRIDCUR:Validated
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6133551/
  21. Jun 2021
  22. elifesciences.org elifesciences.org
    Pore mutation N617D in the skeletal muscle DHPR blocks Ca2+ influx due to atypical high-affinity Ca2+ binding
    1
    1. scibot 11 Jun 2021
      RRID:SCR_014230

      DOI: 10.7554/eLife.63435

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    elifesciences.org/articles/63435
  23. May 2021
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural determinants of voltage-gating properties in calcium channels
    1
    1. scibot 12 May 2021
      RRID:SCR_014230

      DOI: 10.7554/eLife.64087

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @scibot

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8099428/
  25. Oct 2020
  26. elifesciences.org elifesciences.org
    Allosteric mechanism for KCNE1 modulation of KCNQ1 potassium channel activation
    1
    1. scibot 31 Oct 2020
      RRID:SCR_014230

      DOI: 10.7554/eLife.57680

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @evieth

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRIDCUR:Validated RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    elifesciences.org/articles/57680
  27. www.sciencedirect.com www.sciencedirect.com
    Polyreactive Broadly Neutralizing B cells Are Selected to Provide Defense against Pandemic Threat Influenza Viruses
    1
    1. scibot 29 Oct 2020
      RRID:SCR_014230

      DOI: 10.1016/j.immuni.2020.10.005

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRIDCUR:Validated RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S1074761320304465
  28. Sep 2020
  29. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
    1
    1. scibot 17 Sep 2020
      RRID:SCR_014230

      DOI: 10.1111/bph.15076

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRIDCUR:Validated RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15076
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural basis for the activation of PLC-γ isozymes by phosphorylation and cancer-associated mutations
    1
    1. scibot 03 Sep 2020
      RRID:SCR_014230

      DOI: 10.7554/eLife.51700

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @evieth

      SciCrunch record: RRID:SCR_014230

      What is this?
      RRIDCUR:Validated RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC7004563/
  31. Jan 2020
  32. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
    1
    1. scibot 13 Jan 2020
      RRID:SCR_014230

      DOI: 10.1111/bph.14698

      Resource: Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_014230

      What is this?

      RRID:SCR_014230 RRIDCUR:Validated
    Visit annotations in context

    Tags

    Annotators

    URL

    bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/bph.14698
  33. Nov 2018
  34. www.sciencedirect.com www.sciencedirect.com
    Homologous Lympho-Epithelial Kazal-type Inhibitor Domains Delay Blood Coagulation by Inhibiting Factor X and XI with Differential Specificity
    1
    1. scibot 05 Nov 2018
      RRID:SCR_014230

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0969212618302053
  35. www.sciencedirect.com www.sciencedirect.com
    Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance
    1
    1. scibot 05 Nov 2018
      AMBER

      Curator: @Jmenke

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230 RRIDCUR:Missing
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S1097276517307153
  36. europepmc.org europepmc.org
    Malaria parasite LIMP protein regulates sporozoite gliding motility and infectivity in mosquito and mammalian hosts.
    1
    1. scibot 05 Nov 2018
      RRID:SCR_014230

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230
    Visit annotations in context

    Tags

    Annotators

    URL

    europepmc.org/articles/PMC5438254/
  37. Nov 2017
  38. www.sciencedirect.com www.sciencedirect.com
    A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential
    1
    1. scibot 08 Nov 2017
      RRID:SCR_014230

      Curator: @Jmenke

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230 RRIDCUR:Validated
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0092867417310516
  39. www.sciencedirect.com www.sciencedirect.com
    Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket
    1
    1. scibot 08 Nov 2017
      Amber14

      Curator: @chewbeccax

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230 RRIDCUR:Missing
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0092867416313800
  40. www.sciencedirect.com www.sciencedirect.com
    Mechanism of Substrate Translocation in an Alternating Access Transporter
    1
    1. scibot 08 Nov 2017
      AMBER

      Curator: @kaitlinsung

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230 RRIDCUR:Missing
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0092867417302891
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)
    1
    1. scibot 08 Nov 2017
      AMBER 9

      Curator: @jcabotaj

      Resource used:

      (Assisted Model Building with Energy Refinement (AMBER), RRID:SCR_014230)

      SciCrunch record: RRID:SCR_014230

      Alternate resolvers: SciCrunch xml N2T identifiers.org

      What is this?

      RRID:SCR_014230 RRIDCUR:Missing
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC3961105