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  2. aacrjournals.org aacrjournals.org
    Systematic Analysis of Intronic miRNAs Reveals Cooperativity within the Multicomponent FTX Locus to Promote Colon Cancer Development
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      DOI: 10.1158/0008-5472.CAN-20-1406

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    aacrjournals.org/cancerres/article/81/5/1308/649526/Systematic-Analysis-of-Intronic-miRNAs-Reveals
  3. dx.doi.org dx.doi.org
    PCSK1N as a Tumor Size Marker and an ER Stress Response Protein in Corticotroph Pituitary Adenomas
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      DOI: 10.1210/clinem/dgae643

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    Multidirectional effect of low-intensity electrical myostimulation on gene expression and phenotype in thigh and calf muscles after one week of disuse
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      DOI: 10.1101/2024.09.18.613609

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    Signal flow in the NMDA receptor–dependent phosphoproteome regulates postsynaptic plasticity for aversive learning
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      DOI: 10.1126/scisignal.ado9852

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    The Proteogenomics of Prostate Cancer Radioresistance
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    1. scibot 25 Sep 2024
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    ncbi.nlm.nih.gov/pmc/articles/PMC11411600/
  7. Sep 2024
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comprehensive Proteogenomic Profiling Reveals the Molecular Characteristics of Colorectal Cancer at Distinct Stages of Progression
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      DOI: 10.1158/0008-5472.CAN-23-1878

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    ncbi.nlm.nih.gov/pmc/articles/PMC11372369/
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    Recycled melanoma-secreted melanosomes regulate tumor-associated macrophage diversification
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    1. scibot 12 Sep 2024
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      DOI: 10.1038/s44318-024-00103-7

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    ncbi.nlm.nih.gov/pmc/articles/PMC11377571/
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    Aberrant L-Fucose accumulation and increased core fucosylation are metabolic liabilities in mesenchymal glioblastoma
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    1. scibot 12 Sep 2024
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      DOI: 10.1158/0008-5472.CAN-22-0677

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    aacrjournals.org/cancerres/article/83/2/195/715074/Aberrant-L-Fucose-Accumulation-and-Increased-Core
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activation of Cell-Intrinsic Signaling in CAR-T Cells via a Chimeric IL7R Domain
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    1. scibot 11 Sep 2024
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    ncbi.nlm.nih.gov/pmc/articles/PMC11382189/
  12. Aug 2024
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs
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    1. scibot 22 Aug 2024
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      DOI: 10.1101/2024.02.10.579775

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    ncbi.nlm.nih.gov/pmc/articles/PMC10888908/
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    Rapid phagosome isolation enables unbiased multiomic analysis of human microglial phagosomes
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      DOI: 10.1016/j.immuni.2024.07.019

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    sciencedirect.com/science/article/pii/S1074761324003686
  15. www.tandfonline.com www.tandfonline.com
    Drought-induced molecular changes in crown of various barley phytohormone mutants
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    1. scibot 18 Aug 2024
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      DOI: 10.1080/15592324.2024.2371693

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  16. www.nature.com www.nature.com
    Control of mitophagy initiation and progression by the TBK1 adaptors NAP1 and SINTBAD
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      DOI: 10.1038/s41594-024-01338-y

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  17. pubs.acs.org pubs.acs.org
    Shotgun Proteomic-Based Approach with a Q-Exactive Hybrid Quadrupole-Orbitrap High-Resolution Mass Spectrometer for Protein Adductomics on a 3D Human Brain Tumor Neurospheroid Culture Model: The Identification of Adduct Formation in Calmodulin-Dependent Protein Kinase-2 and Annexin-A1 Induced by Pesticide Mixture
    1
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      DOI: 10.1021/acs.jproteome.3c00484

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    pubs.acs.org/doi/full/10.1021/acs.jproteome.3c00484
  18. Jul 2024
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    N-Myristoyltransferase Inhibition causes Mitochondrial Iron Overload and Parthanatos in TIM17A-dependent Aggressive Lung Carcinoma
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    1. scibot 27 Jul 2024
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      DOI: 10.1158/2767-9764.CRC-23-0428

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  20. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004224017851-main-html.html
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      DOI: 10.1016/j.isci.2024.110560

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  21. www.cell.com www.cell.com
    Stress-dependent condensate formation regulated by the ubiquitin-related modifier Urm1
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      DOI: 10.1016/j.cell.2024.06.009

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    cell.com/cell/fulltext/S0092-8674(24)00649-4
  22. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Inhalation of hydrogen gas mitigates sevoflurane-induced neuronal apoptosis in the neonatal cortex and is associated with changes in protein phosphorylation
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      DOI: 10.1111/jnc.16142

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    onlinelibrary.wiley.com/doi/full/10.1111/jnc.16142
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biomarker Identification and Risk Prediction Model Development for Differentiated Thyroid Carcinoma Lung Metastasis Based on Primary Lesion Proteomics
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    ncbi.nlm.nih.gov/pmc/articles/PMC11247316/
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    Proteomic analysis reveals a PLK1-dependent G2/M degradation program and a role for AKAP2 in coordinating the mitotic cytoskeleton
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      DOI: 10.1016/j.celrep.2024.114510

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    sciencedirect.com/science/article/pii/S2211124724008398
  25. www.cell.com www.cell.com
    ADP-ribosylome analysis reveals homogeneous DNA-damage-induced serine ADP-ribosylation across wild-type and BRCA-mutant breast cancer cell lines
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      DOI: 10.1016/j.celrep.2024.114433

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    cell.com/cell-reports/fulltext/S2211-1247(24)00762-9
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Drought-induced molecular changes in crown of various barley phytohormone mutants
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      DOI: 10.1080/15592324.2024.2371693

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    ncbi.nlm.nih.gov/pmc/articles/PMC11210921/
  27. Jun 2024
  28. www.sciencedirect.com www.sciencedirect.com
    Islet cell stress induced by insulin-degrading enzyme deficiency promotes regeneration and protection from autoimmune diabetes
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      DOI: 10.1016/j.isci.2024.109929

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    sciencedirect.com/science/article/pii/S2589004224011519
  29. May 2024
  30. www.sciencedirect.com www.sciencedirect.com
    CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release
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    sciencedirect.com/science/article/pii/S1097276524004003
  31. aacrjournals.org aacrjournals.org
    CircPDIA4 induces gastric cancer progression by promoting ERK1/2 activation and enhancing biogenesis of oncogenic circRNAs
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      DOI: 10.1158/0008-5472.CAN-22-1923

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    aacrjournals.org/cancerres/article/83/4/538/716437/CircPDIA4-Induces-Gastric-Cancer-Progression-by
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    Quantitative proteomics reveals CLR interactome in primary human cells
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    Protocol for affinity purification-mass spectrometry interactome profiling in larvae of Drosophila melanogaster
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      DOI: 10.1016/j.xpro.2024.103064

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    sciencedirect.com/science/article/pii/S2666166724002296
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    Autophagy preferentially degrades non-fibrillar polyQ aggregates
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    sciencedirect.com/science/article/pii/S1097276524003836
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    The MYCN oncoprotein is an RNA-binding accessory factor of the nuclear exosome targeting complex
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  36. elifesciences.org elifesciences.org
    Ribosome subunit attrition and activation of the p53–MDM4 axis dominate the response of MLL-rearranged cancer cells to WDR5 WIN site inhibition
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      DOI: 10.7554/eLife.90683

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    elifesciences.org/articles/90683
  37. www.sciencedirect.com www.sciencedirect.com
    Molecular targets of glucocorticoids that elucidate their therapeutic efficacy in aggressive lymphomas
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    sciencedirect.com/science/article/pii/S1535610824001314
  38. Apr 2024
  39. www.sciencedirect.com www.sciencedirect.com
    Systematic analysis of proteome turnover in an organoid model of pancreatic cancer by dSILO
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      DOI: 10.1016/j.crmeth.2024.100760

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      DOI: 10.1016/j.crmeth.2024.100760

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    sciencedirect.com/science/article/pii/S2667237524000912
  40. www.sciencedirect.com www.sciencedirect.com
    Identification of hypoxic macrophages in glioblastoma with therapeutic potential for vasculature normalization
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    sciencedirect.com/science/article/pii/S1535610824001193
  41. aacrjournals.org aacrjournals.org
    Mesothelin Secretion by Pancreatic Cancer Cells Co-opts Macrophages and Promotes Metastasis
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      DOI: 10.1158/0008-5472.CAN-23-1542

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    aacrjournals.org/cancerres/article/84/4/527/734130/Mesothelin-Secretion-by-Pancreatic-Cancer-Cells-Co
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteomic analysis of the serum in dogs with pulmonary hypertension secondary to myxomatous mitral valve disease: the preliminary study
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      DOI: 10.3389/fvets.2024.1327453

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    ncbi.nlm.nih.gov/pmc/articles/PMC11002142/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dynamic localization of the chromosomal passenger complex in trypanosomes is controlled by the orphan kinesins KIN-A and KIN-B
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      DOI: 10.7554/eLife.93522

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    ncbi.nlm.nih.gov/pmc/articles/PMC10987093/
  44. Mar 2024
  45. www.sciencedirect.com www.sciencedirect.com
    Lysosomal damage sensing and lysophagy initiation by SPG20-ITCH
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      DOI: 10.1016/j.molcel.2024.02.029

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    sciencedirect.com/science/article/pii/S1097276524001722
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    Acetyl-CoA carboxylase obstructs CD8+ T cell lipid utilization in the tumor microenvironment
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      DOI: 10.1016/j.cmet.2024.02.009

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      DOI: 10.1016/j.cmet.2024.02.009

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    sciencedirect.com/science/article/pii/S155041312400055X
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    Structure of the plant plastid-encoded RNA polymerase
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    Origin of eukaryotic-like Vps23 shapes an ancient functional interplay between ESCRT and ubiquitin system in Asgard archaea
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    Parkinson’s VPS35[D620N] mutation induces LRRK2-mediated lysosomal association of RILPL1 and TMEM55B
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    A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1
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    Targeting N-linked Glycosylation for the Therapy of Aggressive Lymphomas
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    Comparative Analysis of Various Spider Silks in Regard to Nerve Regeneration: Material Properties and Schwann Cell Response
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    Mapping of multiple neurotransmitter receptor subtypes and distinct protein complexes to the connectome
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    Temporal landscape of mitochondrial proteostasis governed by the UPRmt
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    Parkinson’s VPS35[D620N] mutation induces LRRK2-mediated lysosomal association of RILPL1 and TMEM55B
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    Response to Bruton’s tyrosine kinase inhibitors in aggressive lymphomas linked to chronic selective autophagy
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  59. Dec 2023
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    RAF-like protein kinases mediate a deeply conserved, rapid auxin response
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    Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer
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    Shotgun Proteomic-Based Approach with a Q-Exactive Hybrid Quadrupole-Orbitrap High-Resolution Mass Spectrometer for Protein Adductomics on a 3D Human Brain Tumor Neurospheroid Culture Model: The Identification of Adduct Formation in Calmodulin-Dependent Protein Kinase-2 and Annexin-A1 Induced by Pesticide Mixture
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    A proteomic insight reveals the role of food-associated Lactiplantibacillus plantarum C9O4 in reverting intestinal inflammation
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    RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks
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    Variability analysis of LC-MS experimental factors and their impact on machine learning
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    Differential Proteome Profiling Analysis under Pesticide Stress by the Use of a Nano-UHPLC-MS/MS Untargeted Proteomic-Based Approach on a 3D-Developed Neurospheroid Model: Identification of Protein Interactions, Prognostic Biomarkers, and Potential Therapeutic Targets in Human IDH Mutant High-Grade Gliomas
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    Analysis of CDPK1 targets identifies a trafficking adaptor complex that regulates microneme exocytosis in Toxoplasma
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  70. Sep 2023
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    Direct recruitment of Mis18 to interphase spindle pole bodies promotes CENP-A chromatin assembly
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    MARCH7-mediated ubiquitination decreases the solubility of ATG14 to inhibit autophagy
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    Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 (NPTX1) as synapto-axonal target in late-stage Parkinson's disease
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  76. Jul 2023
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    Nucleocytoplasmic mRNA redistribution accompanies RNA binding protein mislocalization in ALS motor neurons and is restored by VCP ATPase inhibition
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    Mechanism of orphan subunit recognition during assembly quality control
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    Identification of putative reader proteins of 5-methylcytosine and its derivatives in Caenorhabditis elegans RNA
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    Extracellular Vesicle Secretion by Leukemia Cells In Vivo Promotes CLL Progression by Hampering Antitumor T-cell Responses
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    Parkinson’s VP535[D620N] mutation induces LRRK2 mediated lysosomal association of RILPL1 and TMEM55B
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  82. Jun 2023
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    ROTACs leverage signaling-incompetent R-spondin for targeted protein degradation
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    ROS Induction Targets Persister Cancer Cells with Low Metabolic Activity in NRAS-Mutated Melanoma
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    The Rab5 effector FERRY links early endosomes with mRNA localization
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  86. May 2023
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    Proteomics of immune cells from liver tumors reveals immunotherapy targets
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    Unconventional initiation of PINK1/Parkin mitophagy by Optineurin
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    BAP1 loss is associated with higher ASS1 expression in epithelioid mesothelioma: implications for therapeutic stratification.
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  90. Apr 2023
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    Vascular cells improve functionality of human cardiac organoids
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    Spatial and temporal dynamics of ATP synthase from mitochondria toward the cell surface
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    Compartmentalization of the SUMO/RNF4 pathway by SLX4 drives DNA repair
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    TIAR and FMRP shape pro-survival nascent proteome of leukemia cells in the bone marrow microenvironment
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    N-Terminomic Changes of Neurons During Excitotoxicity Reveal Proteolytic Events Associated with Synaptic Dysfunctions and Potential Targets for Neuroprotection
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    Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes
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    Proteome of airway surface liquid and mucus in newborn wildtype and cystic fibrosis piglets
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    Lysosomal trafficking of the glucose transporter GLUT1 requires sequential regulation by TXNIP and ubiquitin
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    Proteomics profiling of vitreous humor reveals complement and coagulation components, adhesion factors, and neurodegeneration markers as discriminatory biomarkers of vitreoretinal eye diseases
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    Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2
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  103. Feb 2023
  104. www.nature.com www.nature.com
    The AAA+ chaperone VCP disaggregates Tau fibrils and generates aggregate seeds in a cellular system
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    RNA-DNA hybrids prevent resection at dysfunctional telomeres
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  106. Jan 2023
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    A mitochondrion-free eukaryote contains proteins capable of import into an exogenous mitochondrion-related organelle
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    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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    EXOC4 Promotes Diffuse-Type Gastric Cancer Metastasis via Activating FAK Signal
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    Antitumor Activity of the Novel BTK Inhibitor TG-1701 Is Associated with Disruption of Ikaros Signaling in Patients with B-cell Non–Hodgkin Lymphoma
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    Enhancing PD-L1 Degradation by ITCH during MAPK Inhibitor Therapy Suppresses Acquired Resistance
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    Neoadjuvant chemotherapy is associated with an altered metabolic profile and increased cancer stemness in patients with pancreatic ductal adenocarcinoma
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    SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation–Phosphorylation Cross-talk
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  115. Dec 2022
  116. 52.53.155.43 52.53.155.43
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    Epidermal stratification requires retromer-mediated desmoglein-1 recycling
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    Hippo-released WWC1 facilitates AMPA receptor regulatory complexes for hippocampal learning
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  119. Nov 2022
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    Long non-coding RNA PCAT19 safeguards DNA in quiescent endothelial cells by preventing uncontrolled phosphorylation of RPA2
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    The freezability of Mediterranean buffalo sperm is associated with lysine succinylation and lipid metabolism
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  123. Sep 2022
  124. www.sciencedirect.com www.sciencedirect.com
    The molecular network of the proteasome machinery inhibition response is orchestrated by HSP70, revealing vulnerabilities in cancer cells
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    Comparative maternal protein profiling of mouse biparental and uniparental embryos
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    Dopamine drives neuronal excitability via KCNQ channel phosphorylation for reward behavior
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    Convergent cerebrospinal fluid proteomes and metabolic ontologies in humans and animal models of Rett syndrome
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  128. Aug 2022
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    Comparative phosphoproteomic profiling in the prefrontal cortex of prenatally stressed male offspring rats
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    Substrate spectrum of PPM1D in the cellular response to DNA double-strand breaks
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  131. Jul 2022
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    Differentiated glioma cell-derived fibromodulin activates integrin-dependent Notch signaling in endothelial cells to promote tumor angiogenesis and growth
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    Src activation in lipid rafts confers epithelial cells with invasive potential to escape from apical extrusion during cell competition
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  135. Jun 2022
  136. aacrjournals.org aacrjournals.org
    Phosphorylation of SHP2 at Tyr62 enables acquired resistance to SHP2 allosteric inhibitors in FLT3-ITD-driven AML
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    MASTL is enriched in cancerous and pluripotent stem cells and influences OCT1/OCT4 levels
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    The focal adhesion protein β-parvin controls cardiomyocyte shape and sarcomere assembly in response to mechanical load
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  139. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-intensity interval training remodels the proteome and acetylome of human skeletal muscle
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  140. May 2022
  141. www.sciencedirect.com www.sciencedirect.com
    Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment
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    Increased microtubule growth triggered by microvesicle-mediated paracrine signaling is required for melanoma cancer cell invasion
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    Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry
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  144. Apr 2022
  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Proteomic-Based Machine Learning Analysis Reveals PYGB as a Novel Immunohistochemical Biomarker to Distinguish Inverted Urothelial Papilloma From Low-Grade Papillary Urothelial Carcinoma With Inverted Growth
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    USP9X Deubiquitylates DVL2 to Regulate WNT Pathway Specification
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    In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
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  199. jcs.biologists.org jcs.biologists.org
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    Optimization of mass spectrometric parameters improve the identification performance of capillary zone electrophoresis for single-shot bottom-up proteomics analysis
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  201. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts
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    Vps11 and Vps18 of Vps-C membrane traffic complexes are E3 ubiquitin ligases and fine-tune signalling
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    Hydrogen sulfide regulates muscle RING finger‐1 protein S‐sulfhydration at Cys44 to prevent cardiac structural damage in diabetic cardiomyopathy
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    Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo
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    The Neuroprotective Role of the GM1 Oligosaccharide, II<Superscript>3</Superscript>Neu5Ac-Gg<Subscript>4</Subscript>, in Neuroblastoma Cells
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    Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance
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    Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics
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    UBQLN4 Represses Homologous Recombination and Is Overexpressed in Aggressive Tumors
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    Spatially Distinct Pools of TORC1 Balance Protein Homeostasis
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    Chemical Cross-Linking Enables Drafting ClpXP Proximity Maps and Taking Snapshots of In Situ Interaction Networks
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    Genome-wide Rules of Nucleosome Phasing in Drosophila
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    Akt phosphorylates insulin receptor substrate to limit PI3K-mediated PIP3 synthesis
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    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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    Combined morphological and proteome profiling reveals target-independent impairment of cholesterol homeostasis
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  217. Jun 2021
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    Differences and commonalities in plasma membrane recruitment of the two morphogenetically distinct retroviruses HIV-1 and MMTV
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    Nascent RNA antagonizes the interaction of a set of regulatory proteins with chromatin
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    TOR signaling regulates liquid phase separation of the SMN complex governing snRNP biogenesis
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  222. May 2021
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    Proteomic Exploration of Plasma Exosomes and Other Small Extracellular Vesicles in Pediatric Hodgkin Lymphoma: A Potential Source of Biomarkers for Relapse Occurrence
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    Mass-spectrometry-based proteomics reveals mitochondrial supercomplexome plasticity
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    Crosstalk between YAP and RAR-RXR drives expression of stemness genes to promote 5-FU resistance and self-renewal in colorectal cancer cells
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  226. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Diagnostic Biomarkers from Proteomic Characterization of Cerebrospinal Fluid in Patients with Brain Malignancies
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    ATG4 family proteins drive phagophore growth independently of the LC3/GABARAP lipidation system
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    Structural Basis for Bacterial Ribosome-Associated Quality Control by RqcH and RqcP
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  229. Apr 2021
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    A Cell-Autonomous Signature of Dysregulated Protein Phosphorylation Underlies Muscle Insulin Resistance in Type 2 Diabetes
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    Thermal proteome profiling identifies the membrane-bound purinergic receptor P2X4 as a target of the autophagy inhibitor indophagolin
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    Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome
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    Physical and Functional Analysis of the Putative Rpn13 Inhibitor RA190
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    Triplexed Affinity Reagents to Sample the Mammalian Inositol Pyrophosphate Interactome
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    Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila
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