66 Matching Annotations
  1. Feb 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore
    1
    1. scibot 11 Feb 2024
      RRID:SCR_014565

      DOI: 10.1126/sciadv.adj8027

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    ncbi.nlm.nih.gov/pmc/articles/PMC10851258/
  3. Jan 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Design, synthesis and anticancer evaluation of novel arylhydrazones of active methylene compounds
    1
    1. scibot 24 Jan 2024
      GROMACS

      DOI: 10.1016/j.ijbiomac.2023.127909

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    sciencedirect.com/science/article/pii/S0141813023048080
  5. Dec 2023
  6. www.sciencedirect.com www.sciencedirect.com
    Serine-129 phosphorylation of α-synuclein is an activity-dependent trigger for physiologic protein-protein interactions and synaptic function
    1
    1. scibot 22 Dec 2023
      RRID:SCR_014565

      DOI: 10.1016/j.neuron.2023.11.020

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    sciencedirect.com/science/article/pii/S0896627323008942
  7. www.sciencedirect.com www.sciencedirect.com
    Titin domains with reduced core hydrophobicity cause dilated cardiomyopathy
    1
    1. scibot 20 Dec 2023
      RRID:SCR_014565

      DOI: 10.1016/j.celrep.2023.113490

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    sciencedirect.com/science/article/pii/S2211124723015024
  8. f1000research.com f1000research.com
    Co-rotating twin screw process for continuous manufacturing of solid crystal suspension: A promising strategy to enhance the solubility, permeation and oral bioavailability of Carvedilol
    1
    1. scibot 16 Dec 2023
      RRID:SCR_014565

      DOI: 10.12688/f1000research.139228.1

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    f1000research.com/articles/12-1438
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution towards simplicity in bacterial small heat shock protein system
    1
    1. scibot 13 Dec 2023
      RRID:SCR_014565

      DOI: 10.7554/eLife.89813

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    ncbi.nlm.nih.gov/pmc/articles/PMC10708888/
  10. Aug 2023
  11. 52.53.155.43 52.53.155.43
    Structural insights into anion selectivity and activation mechanism of LRRC8 volume-regulated anion channels
    2
    1. scibot 12 Aug 2023
      RRID:SCR_014565

      DOI: 10.1016/j.celrep.2023.112926

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    2. scibot 10 Aug 2023
      RRID:SCR_014565

      DOI: 10.1016/j.celrep.2023.112926

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    52.53.155.43/13d2314e1a08e5e99d70c8b4a30c497d5ddefb63/PIIS2211124723009373-html.html
  12. Jul 2023
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mechanisms of MCL-1 protein stability induced by MCL-1 antagonists in B-cell malignancies
    1
    1. scibot 18 Jul 2023
      RRID:SCR_014565

      DOI: 10.1158/1078-0432.CCR-22-2088

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    ncbi.nlm.nih.gov/pmc/articles/PMC9852224/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Computer-aided drug design approaches applied to screen natural product’s structural analogs targeting arginase in Leishmania spp
    1
    1. scibot 08 Jul 2023
      RRID:SCR_014565

      DOI: 10.12688/f1000research.129943.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10323282/
  15. May 2023
  16. www.sciencedirect.com www.sciencedirect.com
    A nanotherapeutic strategy that engages cytotoxic and immunosuppressive activities for the treatment of cancer recurrence following organ transplantation
    1
    1. scibot 10 May 2023
      RRID:SCR_014565

      DOI: 10.1016/j.ebiom.2023.104594

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    sciencedirect.com/science/article/pii/S2352396423001597
  17. Apr 2023
  18. www.sciencedirect.com www.sciencedirect.com
    Selective killing of the human gastric pathogen Helicobacter pylori by mitochondrial respiratory complex I inhibitors
    1
    1. scibot 26 Apr 2023
      RRID:SCR_014565

      DOI: 10.1016/j.chembiol.2023.04.003

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    sciencedirect.com/science/article/pii/S2451945623000892
  19. link.springer.com link.springer.com
    Entrectinib a Plausible Inhibitor for Osteopontin (SPP1) in Cervical Cancer—Integrated Bioinformatic Approach
    1
    1. scibot 25 Apr 2023
      RRID:SCR_014565

      DOI: 10.1007/s12010-023-04541-7

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    link.springer.com/article/10.1007/s12010-023-04541-7
  20. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Oncogene-mediated nuclear accumulation of lactate promotes epigenetic alterations to induce cancer cell proliferation
    1
    1. scibot 05 Apr 2023
      RRID:SCR_014565

      DOI: 10.1002/jcb.30381

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    onlinelibrary.wiley.com/doi/10.1002/jcb.30381
  21. Mar 2023
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structures of NF-κB p52 homodimer-DNA complexes rationalize binding mechanisms and transcription activation
    1
    1. scibot 10 Mar 2023
      RRID:SCR_014565

      DOI: 10.7554/eLife.86258

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    ncbi.nlm.nih.gov/pmc/articles/PMC9991059/
  23. f1000research.com f1000research.com
    F1000Research Article: In silico molecular docking and molecular dynamic simulation of agarwood compounds with molecular targets of Alzheimer’s disease .
    1
    1. scibot 04 Mar 2023
      RRID:SCR_014565

      DOI: 10.12688/f1000research.130618.1

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    f1000research.com/articles/12-230
  24. Feb 2023
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DYF-5/MAK–dependent phosphorylation promotes ciliary tubulin unloading
    1
    1. scibot 17 Feb 2023
      RRID:SCR_014565

      DOI: 10.1073/pnas.2207134119

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    ncbi.nlm.nih.gov/pmc/articles/PMC9407615/
  26. Jan 2023
  27. 52.53.155.43 52.53.155.43
    ccr-22-2088-html.html
    1
    1. scibot 04 Jan 2023
      SCR_014565

      DOI: 10.1158/1078-0432.ccr-22-2088

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    52.53.155.43/13935f65332ed27c8eea46404a99ca3fb39f2ca4/ccr-22-2088-html.html
  28. Dec 2022
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Membrane curvature sensing and stabilization by the autophagic LC3 lipidation machinery
    1
    1. scibot 31 Dec 2022
      RRID:SCR_014565

      DOI: 10.1126/sciadv.add1436

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    ncbi.nlm.nih.gov/pmc/articles/PMC9750143/
  30. aacrjournals.org aacrjournals.org
    Exploiting ligand binding domain dimerization for development of novel androgen receptor inhibitors
    1
    1. scibot 03 Dec 2022
      RRID:SCR_014565

      DOI: 10.1158/1535-7163.MCT-22-0340

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    aacrjournals.org/mct/article/21/12/1823/711148/Exploiting-Ligand-binding-Domain-Dimerization-for
  31. Sep 2022
  32. f1000research.com f1000research.com
    Anticancer potential of turmeric (<i>Curcuma longa</i>) ethanol extract and prediction of its mechanism through the Akt1 pathway
    1
    1. scibot 10 Sep 2022
      RRID:SCR_014565

      DOI: 10.12688/f1000research.75735.1

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    f1000research.com/articles/11-1000
  33. Aug 2022
  34. www.sciencedirect.com www.sciencedirect.com
    Protocol to study the oligomeric organization of single-span transmembrane peptides using molecular dynamics simulations
    1
    1. scibot 23 Aug 2022
      RRID:SCR_014565

      DOI: 10.1016/j.xpro.2022.101636

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    sciencedirect.com/science/article/pii/S2666166722005160
  35. www.sciencedirect.com www.sciencedirect.com
    Structure of a fully assembled tumor-specific T cell receptor ligated by pMHC
    1
    1. scibot 22 Aug 2022
      RRID:SCR_014565

      DOI: 10.1016/j.cell.2022.07.010

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    sciencedirect.com/science/article/pii/S0092867422009138
  36. Jun 2022
  37. journals.plos.org journals.plos.org
    Inhibition of histone H3-H4 chaperone pathways rescues C. elegans sterility by H2B loss
    1
    1. scibot 17 Jun 2022
      RRID:SCR_014565

      DOI: 10.1371/journal.pgen.1010223

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    journals.plos.org/plosgenetics/article
  38. Mar 2022
  39. www.sciencedirect.com www.sciencedirect.com
    Ligand-independent oligomerization of TACI is controlled by the transmembrane domain and regulates proliferation of activated B cells
    1
    1. scibot 30 Mar 2022
      RRID:SCR_014565

      DOI: 10.1016/j.celrep.2022.110583

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    sciencedirect.com/science/article/pii/S2211124722003278
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mg2+-dependent conformational equilibria in CorA and an integrated view on transport regulation
    1
    1. scibot 04 Mar 2022
      RRID:SCR_014565

      DOI: 10.7554/eLife.71887

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    ncbi.nlm.nih.gov/pmc/articles/PMC8865849/
  41. Feb 2022
  42. elifesciences.org elifesciences.org
    Structural basis of Plasmodium vivax inhibition by antibodies binding to the circumsporozoite protein repeats
    1
    1. scibot 08 Feb 2022
      RRID:SCR_014565

      DOI: 10.7554/eLife.72908

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    elifesciences.org/articles/72908
  43. Jan 2022
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structure-guided glyco-engineering of ACE2 for improved potency as soluble SARS-CoV-2 decoy receptor
    1
    1. scibot 11 Jan 2022
      RRID:SCR_014565

      DOI: 10.7554/eLife.73641

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    ncbi.nlm.nih.gov/pmc/articles/PMC8730730/
  45. Oct 2021
  46. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A novel receptor for platelet-activating factor and lysophosphatidylcholine in Trypanosoma cruzi
    1
    1. scibot 20 Oct 2021
      RRID:SCR_014565

      DOI: 10.1111/mmi.14778

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    onlinelibrary.wiley.com/doi/10.1111/mmi.14778
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cheonggukjang-Specific Component 1,3-Diphenyl-2-Propanone as a Novel PPARα/γ Dual Agonist: An In Vitro and In Silico Study
    1
    1. scibot 15 Oct 2021
      RRID:SCR_014565

      DOI: 10.3390/ijms221910884

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    ncbi.nlm.nih.gov/pmc/articles/PMC8509681/
  48. Aug 2021
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Simulating PIP2-Induced Gating Transitions in Kir6.2 Channels
    1
    1. scibot 27 Aug 2021
      RRID:SCR_014565

      DOI: 10.3389/fmolb.2021.711975

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    ncbi.nlm.nih.gov/pmc/articles/PMC8384051/
  50. onlinelibrary.wiley.com onlinelibrary.wiley.com
    DynaBiS: A Hierarchical Sampling Algorithm to Identify Flexible Binding Sites for Large Ligands and Peptides
    1
    1. scibot 16 Aug 2021
      RRID:SCR_014565

      DOI: 10.1002/prot.26182

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    onlinelibrary.wiley.com/doi/10.1002/prot.26182
  51. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Untitled document
    1
    1. scibot 07 Aug 2021
      RRID:SCR_014565

      DOI: 10.1002/jcb.27636

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    onlinelibrary.wiley.com/doi/full/10.1002/jcb.27636
  52. Jul 2021
  53. link.springer.com link.springer.com
    Expression of Enterocin-P in HEK Platform: Evaluation of Its Cytotoxic Effects on Cancer Cell Lines and Its Potency to Interact with Cell-Surface Glycosaminoglycan by Molecular Modeling
    1
    1. scibot 31 Jul 2021
      GROMACS

      DOI: 10.1007/s10989-019-09956-7

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    link.springer.com/article/10.1007/s10989-019-09956-7
  54. elifesciences.org elifesciences.org
    Identification of an allosteric binding site on the human glycine transporter, GlyT2, for bioactive lipid analgesics
    1
    1. scibot 31 Jul 2021
      Gromacs

      DOI: 10.7554/eLife.47150

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    elifesciences.org/articles/47150
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The HCN domain couples voltage gating and cAMP response in hyperpolarization-activated cyclic nucleotide-gated channels
    1
    1. scibot 29 Jul 2021
      RRID:SCR_014565

      DOI: 10.7554/eLife.49672

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    ncbi.nlm.nih.gov/pmc/articles/PMC6894927/
  56. www.sciencedirect.com www.sciencedirect.com
    Intrinsic Structural Features of the Human IRE1α Transmembrane Domain Sense Membrane Lipid Saturation
    1
    1. scibot 28 Jul 2021
      GROningen MAchine for Chemical Simulations (GROMACS)

      DOI: 10.1016/j.celrep.2019.03.017

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      Curator: @ethanbadger

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    sciencedirect.com/science/article/pii/S2211124719303249
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A fusion peptide in preS1 and the human protein disulfide isomerase ERp57 are involved in hepatitis B virus membrane fusion process
    1
    1. scibot 21 Jul 2021
      RRID:SCR_014565

      DOI: 10.7554/eLife.64507

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    ncbi.nlm.nih.gov/pmc/articles/PMC8282342/
  58. Jun 2021
  59. elifesciences.org elifesciences.org
    Pore mutation N617D in the skeletal muscle DHPR blocks Ca2+ influx due to atypical high-affinity Ca2+ binding
    1
    1. scibot 11 Jun 2021
      RRID:SCR_014565

      DOI: 10.7554/eLife.63435

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    elifesciences.org/articles/63435
  60. May 2021
  61. cancerres.aacrjournals.org cancerres.aacrjournals.org
    A spatial and functional interaction of a heterotetramer Survivin-DNA-PKcs complex in DNA damage response
    1
    1. scibot 10 May 2021
      RRID:SCR_014565

      DOI: 10.1158/0008-5472.CAN-20-2931

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    cancerres.aacrjournals.org/content/81/9/2304
  62. Apr 2021
  63. www.sciencedirect.com www.sciencedirect.com
    Investigating GIPR (ant)agonism: A structural analysis of GIP and its receptor
    1
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      RRID:SCR_014565

      DOI: 10.1016/j.str.2021.04.001

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    sciencedirect.com/science/article/pii/S0969212621001179
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of a novel mCH3 conjugated anti-PcrV scFv molecule
    1
    1. scibot 06 Apr 2021
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      DOI: 10.1038/s41598-021-86491-w

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    ncbi.nlm.nih.gov/pmc/articles/PMC8010009/
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Kinetic analysis of ASIC1a delineates conformational signaling from proton-sensing domains to the channel gate
    1
    1. scibot 02 Apr 2021
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      DOI: 10.7554/eLife.66488

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    ncbi.nlm.nih.gov/pmc/articles/PMC8009679/
  66. Mar 2021
  67. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    A conserved arginine with non‐conserved function is a key determinant of agonist selectivity in α7 nicotinic acetylcholine receptors
    1
    1. scibot 04 Mar 2021
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      DOI: 10.1111/bph.15389

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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15389
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pre-existing bilayer stresses modulate triglyceride accumulation in the ER versus lipid droplets
    1
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      DOI: 10.7554/eLife.62886

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  69. Feb 2021
  70. www.cell.com www.cell.com
    The hitchhiker's guide to the periplasm: unexpected molecular interactions of polymyxin B1 in E. coli
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    1. scibot 26 Feb 2021
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      DOI: 10.1016/j.str.2021.01.009

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    cell.com/structure/abstract/S0969-2126(21)00009-5
  71. Dec 2020
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11
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      DOI: 10.7554/eLife.59018

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  73. elifesciences.org elifesciences.org
    Rationally derived inhibitors of hepatitis C virus (HCV) p7 channel activity reveal prospect for bimodal antiviral therapy
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    1. scibot 09 Dec 2020
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      DOI: 10.7554/eLife.52555

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  74. Nov 2020
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Investigating the trade-off between folding and function in a multidomain Y-family DNA polymerase
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    1. scibot 12 Nov 2020
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      DOI: 10.7554/eLife.60434

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  76. Sep 2020
  77. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    BPS Publications
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      DOI: 10.1111/bph.15196

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    pubmed.ncbi.nlm.nih.gov/32663327/
  78. www.frontiersin.org www.frontiersin.org
    Computational Design of a Novel VLP-Based Vaccine for Hepatitis B Virus
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      DOI: 10.3389/fimmu.2020.02074

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      DOI: 10.3389/fimmu.2020.02074

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    frontiersin.org/article/10.3389/fimmu.2020.02074/full
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Local frustration determines loop opening during the catalytic cycle of an oxidoreductase
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    1. scibot 10 Sep 2020
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      DOI: 10.7554/eLife.54661

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    ncbi.nlm.nih.gov/pmc/articles/PMC7347389/
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    β11-12 linker isomerization governs acid-sensing ion channel desensitization and recovery
    1
    1. scibot 08 Sep 2020
      RRID:SCR_014565

      DOI: 10.7554/eLife.51111

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    ncbi.nlm.nih.gov/pmc/articles/PMC7041949/
  81. Jan 2020
  82. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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    1. scibot 13 Jan 2020
      RRID:SCR_014565

      DOI: 10.1111/bph.14798

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    bpspubs.onlinelibrary.wiley.com/doi/abs/10.1111/bph.14798
  83. www.sciencedirect.com www.sciencedirect.com
    Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_014565

      DOI: 10.1016/j.molcel.2019.06.037

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  84. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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      DOI: 10.1111/bph.14693

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  85. Nov 2018
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6056239/
  87. pubs.acs.org pubs.acs.org
    Pierced Lasso Topology Controls Function in Leptin
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      GROMACS 4

      Curator: @anp055

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    pubs.acs.org/doi/full/10.1021/acs.jpcb.6b11506
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Aromatic Rings Commonly Used in Medicinal Chemistry: Force Fields Comparison and Interactions With Water Toward the Design of New Chemical Entities
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC5928326/
  89. www.sciencedirect.com www.sciencedirect.com
    The O-GlcNAc Transferase Intellectual Disability Mutation L254F Distorts the TPR Helix
    1
    1. scibot 05 Nov 2018
      GROMACS

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    sciencedirect.com/science/article/pii/S2451945618300837
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Bladder-cancer-associated mutations in RXRA activate peroxisome proliferator-activated receptors to drive urothelial proliferation
    1
    1. scibot 05 Nov 2018
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    ncbi.nlm.nih.gov/pmc/articles/PMC5720590/
  91. Nov 2017
  92. www.sciencedirect.com www.sciencedirect.com
    Structural Basis for Apelin Control of the Human Apelin Receptor
    1
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      Gromacs

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    sciencedirect.com/science/article/pii/S0969212617301260
  93. www.sciencedirect.com www.sciencedirect.com
    Activation of the Unfolded Protein Response by Lipid Bilayer Stress
    1
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      GROMACS

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1097276517304392
  94. elifesciences.org elifesciences.org
    Changes in the free-energy landscape of p38α MAP kinase through its canonical activation and binding events as studied by enhanced molecular dynamics simulations
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      SCR_014565

      Curator: @kaitlinsung

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    elifesciences.org/content/6/e22175
  95. www.sciencedirect.com www.sciencedirect.com
    Crystal Structure of the Human Cannabinoid Receptor CB1
    1
    1. scibot 08 Nov 2017
      GROMACS

      Curator: @chewbeccax

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