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pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

The gut microbiome promotes mitochondrial respiration in the brain of a Parkinson’s disease mouse model

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1. scibot 23 Oct 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1038/s41531-025-01142-5
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12537952/
Oct 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Integrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson’s disease

1
1. scibot 17 Oct 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1186/s40168-025-02227-2
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12502400/
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Protocol to pinpoint oxidized and reduced cysteine residues in brown fat using differential alkylation labeling techniques

1
1. scibot 15 Oct 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.xpro.2025.104137
  
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sciencedirect.com/science/article/pii/S266616672500543X
Sep 2025
www.medrxiv.org www.medrxiv.org

Multi-protein panel in pancreatic cyst fluid for improved risk stratification for pancreatic cancer

1
1. scibot 25 Sep 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1101/2025.09.17.25335852
  
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medrxiv.org/content/10.1101/2025.09.17.25335852v1
jbiomedsci.biomedcentral.com jbiomedsci.biomedcentral.com

PPM1D is directly degraded by proteasomes in a ubiquitination-independent manner through its carboxyl-terminal region

1
1. scibot 16 Sep 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1186/s12929-025-01185-z
  
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jbiomedsci.biomedcentral.com/articles/10.1186/s12929-025-01185-z
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Drug–Drug Interaction Liabilities with BTK Inhibitor TL-895

1
1. scibot 16 Sep 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1158/2767-9764.CRC-25-0265
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12426595/
Aug 2025
52.53.155.43 52.53.155.43

41594_2025_1631_MOESM4_ESM-html.html

2
1. scibot 13 Aug 2025
  
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  RRID:SCR_014593
  
  DOI: 10.5281/zenodo.14243720
  
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  Curator: @dhovakimyan1
  
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2. scibot 13 Aug 2025
  
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  RRID:SCR_014593
  
  DOI: 10.5281/zenodo.14243720
  
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52.53.155.43/2894f1585e3ca7aaaea575ab75ca401271c73618/41594_2025_1631_MOESM4_ESM-html.html
Jul 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Chronic inorganic nitrate supplementation does not improve metabolic health and worsens disease progression in mice with diet-induced obesity

1
1. scibot 25 Jul 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1152/ajpendo.00256.2024
  
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pmc.ncbi.nlm.nih.gov/articles/PMC7617849/
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Unraveling mitochondrial pyruvate dysfunction to mitigate hyperlactatemia and lethality in sepsis

1
1. scibot 22 Jul 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.celrep.2025.116032
  
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sciencedirect.com/science/article/pii/S2211124725008034
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Subtherapeutic Dose of Ionizing Radiation Reprograms the Pre-Metastatic Lung Niche, Accelerating Its Formation and Promoting Metastasis

1
1. scibot 11 Jul 2025
  
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  RRID:SCR_014593
  
  DOI: 10.3390/ijms26136145
  
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mdpi.com/1422-0067/26/13/6145
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Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike protein

1
1. scibot 08 Jul 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.celrep.2025.115941
  
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sciencedirect.com/science/article/pii/S2211124725007120
Jun 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Salmonella exploits host- and bacterial-derived β-alanine for replication inside host macrophages

1
1. scibot 25 Jun 2025
  
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  RRID:SCR_014593
  
  DOI: 10.7554/eLife.103714
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12178601/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

PDZ-directed substrate recruitment is the primary determinant of specific 4E-BP1 dephosphorylation by PP1-Neurabin

1
1. scibot 25 Jun 2025
  
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  RRID:SCR_014593
  
  DOI: 10.7554/eLife.103403
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12185105/
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Dual independent mechanisms underlying gut epithelial remodeling upon sugar substitute consumption

1
1. scibot 18 Mar 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1096/fj.202402105RR
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11891951/
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Ethyl Acetate Fraction of Chestnut Honey Attenuates Scopolamine-Induced Cognitive Impairment in Mice and Glutamate-Induced Neurotoxicity in HT22 Cells

1
1. scibot 06 Mar 2025
  
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  Xcalibur v.4.2 software (Thermo Fisher Scientific
  
  DOI: 10.3390/antiox13111346
  
  Resource: Thermo Xcalibur (RRID:SCR_014593)
  
  Curator: @areedewitt04
  
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mdpi.com/2076-3921/13/11/1346
Feb 2025
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Hepatic sphingomyelin phosphodiesterase 3 promotes steatohepatitis by disrupting membrane sphingolipid metabolism

1
1. scibot 27 Feb 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.cmet.2025.01.016
  
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sciencedirect.com/science/article/pii/S1550413125000166
Jan 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Hypoxia-triggered ERRα acetylation enhanced its oncogenic role and promoted progression of renal cell carcinoma by coordinating autophagosome-lysosome fusion

1
1. scibot 23 Jan 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1038/s41419-025-07345-1
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11739407/
rupress.org rupress.org

TanGIBLE: A selective probe for evaluating hydrophobicity-exposed defective proteins in live cells

1
1. scibot 18 Jan 2025
  
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  RRID:SCR_014593
  
  DOI: 10.1083/jcb.202109010
  
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rupress.org/jcb/article/224/3/e202109010/277212/TanGIBLE-A-selective-probe-for-evaluating
Dec 2024
www.biorxiv.org www.biorxiv.org

The gut microbiome promotes mitochondrial respiration in the brain of a Parkinson’s disease mouse model

1
1. scibot 27 Dec 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1101/2024.12.18.629251
  
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biorxiv.org/content/10.1101/2024.12.18.629251v1
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Molecular details and phospho-regulation of the CENP-T-Mis12 complex interaction during mitosis in DT40 cells

1
1. scibot 13 Dec 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.isci.2024.111295
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11612794/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Tracking fructose 1,6-bisphosphate dynamics in liver cancer cells using a fluorescent biosensor

1
1. scibot 11 Dec 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.isci.2024.111336
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11617404/
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Sex differences in the antinociceptive effect of codeine and its peripheral but not central metabolism in adult mice

1
1. scibot 02 Dec 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.neuropharm.2024.110228
  
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sciencedirect.com/science/article/pii/S0028390824003976
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Stable GDP-tubulin islands rescue dynamic microtubules

1
1. scibot 26 Nov 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1083/jcb.202307074
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11101955/
Sep 2024
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DDI2 protease controls embryonic development and inflammation via TCF11/NRF1

1
1. scibot 25 Sep 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.isci.2024.110893
  
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sciencedirect.com/science/article/pii/S2589004224021187
Aug 2024
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Different Proteomic Profiles Regarding Antihypertensive Therapy in Preeclampsia Pregnant

1
1. scibot 22 Aug 2024
  
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  RRID:SCR_014593
  
  DOI: 10.3390/ijms25168738
  
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mdpi.com/1422-0067/25/16/8738
Jul 2024
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Metabolomic landscape of renal cell carcinoma in von Hippel-Lindau syndrome in a Chinese cohort

1
1. scibot 24 Jul 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.isci.2024.110357
  
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sciencedirect.com/science/article/pii/S2589004224015827
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

BPS Publications

1
1. scibot 19 Jul 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1111/bph.16490
  
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bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.16490
May 2024
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CHES1 modulated tumorigenesis and senescence of pancreas cancer cells through repressing AKR1B10

1
1. scibot 09 May 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.bbadis.2024.167214
  
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sciencedirect.com/science/article/pii/S0925443924002035
Apr 2024
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Systematic analysis of proteome turnover in an organoid model of pancreatic cancer by dSILO

2
1. scibot 30 Apr 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.crmeth.2024.100760
  
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2. scibot 30 Apr 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.crmeth.2024.100760
  
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sciencedirect.com/science/article/pii/S2667237524000912
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Global O-glycoproteome enrichment and analysis enabled by a combinatorial enzymatic workflow

1
1. scibot 09 Apr 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.crmeth.2024.100744
  
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sciencedirect.com/science/article/pii/S2667237524000699
Mar 2024
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Acetyl-CoA carboxylase obstructs CD8+ T cell lipid utilization in the tumor microenvironment

2
1. scibot 15 Mar 2024
  
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  SCR_014593
  
  DOI: 10.1016/j.cmet.2024.02.009
  
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2. scibot 15 Mar 2024
  
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  SCR_014593
  
  DOI: 10.1016/j.cmet.2024.02.009
  
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sciencedirect.com/science/article/pii/S155041312400055X
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Retinoic acid receptor activation reprograms senescence response and enhances anti-tumor activity of natural killer cells

3
1. scibot 01 Mar 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.ccell.2024.02.004
  
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2. scibot 01 Mar 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.ccell.2024.02.004
  
  Resource: Thermo Xcalibur (RRID:SCR_014593)
  
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3. scibot 01 Mar 2024
  
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  RRID:SCR_014593
  
  DOI: 10.1016/j.ccell.2024.02.004
  
  Resource: Thermo Xcalibur (RRID:SCR_014593)
  
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sciencedirect.com/science/article/pii/S1535610824000485
Feb 2024
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Protocol for organelle-specific cysteine capture and quantification of cysteine oxidation state

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Non-essential amino acid availability influences proteostasis and breast cancer cell survival during proteotoxic stress

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Profiling nuclear cysteine ligandability and effects on nuclear localization using proximity labeling-coupled chemoproteomics

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Adenosinergic System and BDNF Signaling Changes as a Cross-Sectional Feature of RTT: Characterization of Mecp2 Heterozygous Mouse Females

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Loss of succinyl-CoA synthetase in mouse forebrain results in hypersuccinylation with perturbed neuronal transcription and metabolism

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Chlorophyll biosynthesis under the control of arginine metabolism

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Identification of putative reader proteins of 5-methylcytosine and its derivatives in Caenorhabditis elegans RNA

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Extracellular Vesicle Secretion by Leukemia Cells In Vivo Promotes CLL Progression by Hampering Antitumor T-cell Responses

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Non-essential amino acid availability influences proteostasis and breast cancer cell survival during proteotoxic stress.

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Jun 2023
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Exploring the Immunogenicity of Noncanonical HLA-I Tumor Ligands Identified through Proteogenomics

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Tracer metabolomics reveals the role of aldose reductase in glycosylation

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The C-terminal 32-mer fragment of hemoglobin alpha is an amyloidogenic peptide with antimicrobial properties

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Integrative genetic analysis identifies FLVCR1 as a plasma-membrane choline transporter in mammals

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Compartmentalization of the SUMO/RNF4 pathway by SLX4 drives DNA repair

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Integrative omics-analysis of lipid metabolism regulation by peroxisome proliferator-activated receptor a and b agonists in male Atlantic cod

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Mar 2023
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Temsavir blocks the immunomodulatory activities of HIV-1 soluble gp120

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Redox proteomics combined with proximity labeling enables monitoring of localized cysteine oxidation in cells

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Ricca’s factors as mobile proteinaceous effectors of electrical signaling

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BPS Publications

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Hepatic phosphatidylcholine catabolism driven by PNPLA7 and PNPLA8 supplies endogenous choline to replenish the methionine cycle with methyl groups

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A choline-releasing glycerophosphodiesterase essential for phosphatidylcholine biosynthesis and blood stage development in the malaria parasite

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Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors

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The molecular basis of socially induced egg-size plasticity in honey bees

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Stress-mediated attenuation of translation undermines T-cell activity in cancer

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can-22-1744-html.html

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SHMT2-mediated mitochondrial serine metabolism drives 5-FU resistance by fueling nucleotide biosynthesis

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Skeletal progenitors preserve proliferation and self-renewal upon inhibition of mitochondrial respiration by rerouting the TCA cycle

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Metabolic-scale gene activation screens identify SLCO2B1 as a heme transporter that enhances cellular iron availability

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Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors

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MASTL is enriched in cancerous and pluripotent stem cells and influences OCT1/OCT4 levels

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Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry

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Distinct and diverse chromatin proteomes of ageing mouse organs reveal protein signatures that correlate with physiological functions

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Feb 2022
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Maternal diet-induced obesity during pregnancy alters lipid supply to mouse E18.5 fetuses and changes the cardiac tissue lipidome in a sex-dependent manner

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Jan 2022
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A purine metabolic checkpoint that prevents autoimmunity and autoinflammation

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Thiol profiling in cancer cell lines by HPLC-mass spectrometry

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  DOI: 10.1016/j.xpro.2021.100977
  
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Statins affect cancer cell plasticity with distinct consequences for tumor progression and metastasis

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Inhibition of glucose transport synergizes with chemical or genetic disruption of mitochondrial metabolism and suppresses TCA cycle-deficient tumors

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The Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptides

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Secondary metabolites of Hülle cells mediate protection of fungal reproductive and overwintering structures against fungivorous animals

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Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations

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Assembly principles of the human R2TP chaperone complex reveal the presence of R2T and R2P complexes

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Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis

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High-endothelial cell-derived S1P regulates dendritic cell localization and vascular integrity in the lymph node

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Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity

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RIPLET and not TRIM25 is required for endogenous RIG‐I‐dependent anti‐viral responses

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Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer

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Functional cross-talk between allosteric effects of activating and inhibiting ligands underlies PKM2 regulation

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Talin-mediated force transmission and talin rod domain unfolding independently regulate adhesion signaling

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  DOI: 10.1242/jcs.226514
  
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Discovery of Small-Molecule Selective mTORC1 Inhibitors via Direct Inhibition of Glucose Transporters

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Shear stress and oxygen availability drive differential changes in opossum kidney proximal tubule cell metabolism and endocytosis

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A bacterial riboswitch class for the thiamin precursor HMP-PP employs a terminator-embedded aptamer

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The Neuroprotective Role of the GM1 Oligosaccharide, II<Superscript>3</Superscript>Neu5Ac-Gg<Subscript>4</Subscript>, in Neuroblastoma Cells

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BPS Publications

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  DOI: 10.1111/bph.15515
  
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bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15515
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Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form

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Tachykinin signaling inhibits task-specific behavioral responsiveness in honeybee workers

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Alternative splicing of clathrin heavy chain contributes to the switch from coated pits to plaques

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  DOI: 10.1083/jcb.201912061
  
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BPS Publications

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  DOI: 10.1111/bph.14881
  
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bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.14881
Jan 2021
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The half-life of the bone-derived hormone osteocalcin is regulated through O-glycosylation in mice, but not in humans

1
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ncbi.nlm.nih.gov/pmc/articles/PMC7822592/
Sep 2020
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Metabolic Insights Into Infochemicals Induced Colony Formation and Flocculation in Scenedesmus subspicatus Unraveled by Quantitative Proteomics

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  DOI: 10.3389/fmicb.2020.00792
  
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FAMIN Is a Multifunctional Purine Enzyme Enabling the Purine Nucleotide Cycle

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Bone Marrow Mesenchymal Stem Cells Support Acute Myeloid Leukemia Bioenergetics and Enhance Antioxidant Defense and Escape from Chemotherapy

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Metabolic basis of neuronal vulnerability to ischemia; an in vivo untargeted metabolomics approach

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  DOI: 10.1038/s41598-020-63483-w
  
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BPS Publications

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  DOI: 10.1111/bph.14921
  
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Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis

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  DOI: 10.1016/j.cmet.2020.03.009
  
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Region-Specific Proteome Changes of the Intestinal Epithelium during Aging and Dietary Restriction

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  DOI: 10.1016/j.celrep.2020.107565
  
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NAD+ Repletion Rescues Female Fertility during Reproductive Aging

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  DOI: 10.1016/j.celrep.2020.01.058
  
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Maintaining Iron Homeostasis Is the Key Role of Lysosomal Acidity for Cell Proliferation

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  DOI: 10.1016/j.molcel.2020.01.003
  
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sciencedirect.com/science/article/pii/S1097276520300034
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Mesothelial Cell HIF1α Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk

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  DOI: 10.1016/j.celrep.2019.11.079
  
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Reprogramming of Amino Acid Transporters to Support Aspartate and Glutamate Dependency Sustains Endocrine Resistance in Breast Cancer

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  DOI: 10.1016/j.celrep.2019.06.010
  
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BPS Publications

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  DOI: 10.1111/bph.14774
  
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Mechanism of clomazone resistance in Leptochloa fusca spp. fasicularis to clomazone

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  DOI: 10.1016/j.pestbp.2019.09.001
  
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Untitled document

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Untitled document

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Acetate Production from Glucose and Coupling to Mitochondrial Metabolism in Mammals

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Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring

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Dynamic Acetylation of Phosphoenolpyruvate Carboxykinase Toggles Enzyme Activity between Gluconeogenic and Anaplerotic Reactions

1
1. scibot 05 Nov 2018
  
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Mycobacterial Mutagenesis and Drug Resistance Are Controlled by Phosphorylation- and Cardiolipin-Mediated Inhibition of the RecA Coprotease

1
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A Glycoengineered Enzyme with Multiple Mannose-6-Phosphates Is Internalized into Diseased Cells to Restore Its Activity in Lysosomes

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Quiescent Endothelial Cells Upregulate Fatty Acid β-Oxidation for Vasculoprotection via Redox Homeostasis

1
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Basal Mitophagy Occurs Independently of PINK1 in Mouse Tissues of High Metabolic Demand

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1. scibot 05 Nov 2018
  
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Resolving the Combinatorial Complexity of Smad Protein Complex Formation and Its Link to Gene Expression

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Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins

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A Dual Role of Caspase-8 in Triggering and Sensing Proliferation-Associated DNA Damage, a Key Determinant of Liver Cancer Development

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Negative regulation of urokinase receptor activity by a GPI-specific phospholipase C in breast cancer cells

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1. scibot 08 Nov 2017
  
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The β-alanine transporter BalaT is required for visual neurotransmission in Drosophila

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1. scibot 08 Nov 2017
  
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Hypothalamic AMPK-ER Stress-JNK1 Axis Mediates the Central Actions of Thyroid Hormones on Energy Balance

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Hypothalamic AMPK-ER Stress-JNK1 Axis Mediates the Central Actions of Thyroid Hormones on Energy Balance

1
1. scibot 08 Nov 2017
  
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  SCR_014593
  
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Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination

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Synthesis and Degradation of Adenosine 5′-Tetraphosphate by Nicotinamide and Nicotinate Phosphoribosyltransferases

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1. scibot 08 Nov 2017
  
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Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells

1
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Extensive cargo identification reveals distinct biological roles of the 12 importin pathways

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Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases

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Absolute Quantification of Matrix Metabolites Reveals the Dynamics of Mitochondrial Metabolism

1
1. scibot 08 Nov 2017
  
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  XCalibur QuanBrowser 2.2
  
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bmcplantbiol.biomedcentral.com bmcplantbiol.biomedcentral.com

Single-cell-type quantitative proteomic and ionomic analysis of epidermal bladder cells from the halophyte model plant Mesembryanthemum crystallinum to identify salt-responsive proteins

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