72 Matching Annotations
  1. Last 7 days
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
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    1. scibot 17 Jul 2024
      RRID:SCR_014982

      DOI: 10.1093/gigascience/giae038

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    ncbi.nlm.nih.gov/pmc/articles/PMC11240238/
  3. www.biorxiv.org www.biorxiv.org
    PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
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    1. scibot 16 Jul 2024
      SCR_014982

      DOI: 10.1101/2024.06.26.600753

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    biorxiv.org/content/10.1101/2024.06.26.600753v1
  4. Jun 2024
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic gene signatures measure satellite cell activity in muscular dystrophies
    1
    1. scibot 08 Jun 2024
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      DOI: 10.1016/j.isci.2024.109947

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    ncbi.nlm.nih.gov/pmc/articles/PMC11150970/
  6. www.sciencedirect.com www.sciencedirect.com
    Experience-dependent regulation of dopaminergic signaling in the somatosensory cortex
    1
    1. scibot 04 Jun 2024
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      DOI: 10.1016/j.pneurobio.2024.102630

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    sciencedirect.com/science/article/pii/S0301008224000662
  7. Apr 2024
  8. www.sciencedirect.com www.sciencedirect.com
    ER-associated degradation adapter Sel1L is required for CD8+ T cell function and memory formation following acute viral infection
    1
    1. scibot 30 Apr 2024
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      DOI: 10.1016/j.celrep.2024.114156

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    sciencedirect.com/science/article/pii/S2211124724004844
  9. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Beyond basics: Key mutation selection features for successful tumor-informed ctDNA detection
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    1. scibot 17 Apr 2024
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      DOI: 10.1002/ijc.34964

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    onlinelibrary.wiley.com/doi/10.1002/ijc.34964
  10. Feb 2024
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Parkinson’s Disease Risk Enhancers in Microglia
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    1. scibot 08 Feb 2024
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      DOI: 10.1016/j.isci.2024.108921

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    ncbi.nlm.nih.gov/pmc/articles/PMC10845915/
  12. Jan 2024
  13. www.sciencedirect.com www.sciencedirect.com
    Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1016/j.cub.2023.12.050

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    sciencedirect.com/science/article/pii/S0960982223017505
  14. Dec 2023
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    OvaPrint™ - a cell-free DNA methylation liquid biopsy for the risk assessment of high-grade serous ovarian cancer
    1
    1. scibot 20 Dec 2023
      RRID:SCR_014982

      DOI: 10.1158/1078-0432.CCR-23-1197

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  16. 52.53.155.43 52.53.155.43
    ccr-23-1197-html.html
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    1. scibot 01 Dec 2023
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  17. Nov 2023
  18. dx.doi.org dx.doi.org
    Integrative genomic analyses identify lncRNA regulatory networks across pediatric leukemias and solid tumors
    1
    1. scibot 10 Nov 2023
      RRID:SCR_014982

      DOI: 10.1158/0008-5472.CAN-22-3186

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    dx.doi.org/10.1158/0008-5472.CAN-22-3186
  19. Oct 2023
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis
    1
    1. scibot 14 Oct 2023
      RRID:SCR_014982

      DOI: 10.12688/wellcomeopenres.19453.1

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  21. 52.53.155.43 52.53.155.43
    can-22-3186-html.html
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    1. scibot 07 Oct 2023
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      DOI: 10.1158/0008-5472.can-22-3186

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  22. Sep 2023
  23. 52.53.155.43 52.53.155.43
    can-22-3186-html.html
    1
    1. scibot 22 Sep 2023
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  24. Aug 2023
  25. 52.53.155.43 52.53.155.43
    Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
    1
    1. scibot 12 Aug 2023
      RRID:SCR_014982

      DOI: 10.12688/f1000research.128391.1

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    52.53.155.43/0437548470cda97ce909894a5888517b73909f28/8e420e57-e09a-4026-a616-03b621d0c144_128391_-_asela_wijeratne-html.html
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
    1
    1. scibot 01 Aug 2023
      RRID:SCR_014982

      DOI: 10.3390/cimb45070365

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    ncbi.nlm.nih.gov/pmc/articles/PMC10377871/
  27. Jul 2023
  28. www.sciencedirect.com www.sciencedirect.com
    Nucleocytoplasmic mRNA redistribution accompanies RNA binding protein mislocalization in ALS motor neurons and is restored by VCP ATPase inhibition
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    1. scibot 22 Jul 2023
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      DOI: 10.1016/j.neuron.2023.06.019

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    sciencedirect.com/science/article/pii/S0896627323004786
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Immunological modifications following chemotherapy are associated with delayed recurrence of ovarian cancer
    1
    1. scibot 12 Jul 2023
      RRID:SCR_014982

      DOI: 10.3389/fimmu.2023.1204148

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    ncbi.nlm.nih.gov/pmc/articles/PMC10331425/
  30. May 2023
  31. link.springer.com link.springer.com
    The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden
    1
    1. scibot 24 May 2023
      RRID:SCR_014982

      DOI: 10.1186/s12967-023-04178-4

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    link.springer.com/article/10.1186/s12967-023-04178-4
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A workflow reproducibility scale for automatic validation of biological interpretation results
    1
    1. scibot 09 May 2023
      RRID:SCR_014982

      DOI: 10.1093/gigascience/giad031

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    ncbi.nlm.nih.gov/pmc/articles/PMC10164546/
  33. Mar 2023
  34. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
    2
    1. scibot 30 Mar 2023
      RRID:SCR_014982

      DOI: 10.12688/wellcomeopenres.18868.1

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      DOI: 10.12688/wellcomeopenres.18868.1

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    europepmc.org/article/ppr/ppr634883
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of the mustard hill coral, Porites astreoides
    1
    1. scibot 02 Mar 2023
      RRID:SCR_014982

      DOI: 10.46471/gigabyte.65

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693771/
  36. Feb 2023
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PFKFB3 overexpression in monocytes of patients with colon but not rectal cancer programs pro-tumor macrophages and is indicative for higher risk of tumor relapse
    1
    1. scibot 02 Feb 2023
      SCR_014982

      DOI: 10.3389/fimmu.2022.1080501

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    ncbi.nlm.nih.gov/pmc/articles/PMC9887047/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular phenotypic map of malignant pleural mesothelioma
    1
    1. scibot 02 Feb 2023
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      DOI: 10.1093/gigascience/giac128

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    ncbi.nlm.nih.gov/pmc/articles/PMC9881451/
  39. Jan 2023
  40. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
    1
    1. scibot 31 Jan 2023
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      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  41. www.sciencedirect.com www.sciencedirect.com
    MERR APEX-seq protocol for profiling the subcellular nascent transcriptome in mammalian cells
    1
    1. scibot 26 Jan 2023
      RRID:SCR_014982

      DOI: 10.1016/j.xpro.2023.102057

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    sciencedirect.com/science/article/pii/S2666166723000151
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera
    1
    1. scibot 26 Jan 2023
      RRID:SCR_014982

      DOI: 10.1093/gigascience/giac127

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    ncbi.nlm.nih.gov/pmc/articles/PMC9868349/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Circulating Tumor DNA in Stage III Colorectal Cancer, beyond Minimal Residual Disease Detection, toward Assessment of Adjuvant Therapy Efficacy and Clinical Behavior of Recurrences
    1
    1. scibot 12 Jan 2023
      RRID:SCR_014982

      DOI: 10.1158/1078-0432.CCR-21-2404

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    ncbi.nlm.nih.gov/pmc/articles/PMC9401484/
  44. Nov 2022
  45. www.sciencedirect.com www.sciencedirect.com
    Systematic single-cell pathway analysis to characterize early T cell activation
    1
    1. scibot 23 Nov 2022
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      DOI: 10.1016/j.celrep.2022.111697

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    sciencedirect.com/science/article/pii/S2211124722015716
  46. Oct 2022
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiomic characterization and drug testing establish circulating tumor cells as an ex vivo tool for personalized medicine
    1
    1. scibot 08 Oct 2022
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      DOI: 10.1016/j.isci.2022.105081

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    ncbi.nlm.nih.gov/pmc/articles/PMC9529671/
  48. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004222013530-main-html.html
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    1. scibot 06 Oct 2022
      RRID:SCR_014982

      DOI: 10.1016/j.isci.2022.105081

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    52.53.155.43/c48193a37113c2957d0d524999944a402836d9cc/1-s2.0-S2589004222013530-main-html.html
  49. Aug 2022
  50. aacrjournals.org aacrjournals.org
    Developmental pathways are epigenetically reprogrammed during lung cancer brain metastasis
    1
    1. scibot 16 Aug 2022
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      DOI: 10.1158/0008-5472.CAN-21-4160

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    aacrjournals.org/cancerres/article/82/15/2692/707331/Developmental-Pathways-Are-Epigenetically
  51. www.sciencedirect.com www.sciencedirect.com
    TOP1 CAD-seq: A protocol to map catalytically engaged topoisomerase 1 in human cells
    1
    1. scibot 04 Aug 2022
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      DOI: 10.1016/j.xpro.2022.101581

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    sciencedirect.com/science/article/pii/S2666166722004610
  52. May 2022
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Time-course of host cell transcription during the HTLV-1 transcriptional burst
    1
    1. scibot 28 May 2022
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      DOI: 10.1371/journal.ppat.1010387

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    ncbi.nlm.nih.gov/pmc/articles/PMC9135347/
  54. Apr 2022
  55. aacrjournals.org aacrjournals.org
    FREQUENCY AND GENOMIC ASPECTS OF INTRINSIC RESISTANCE TO VISMODEGIB IN LOCALLY ADVANCED BASAL CELL CARCINOMA
    1
    1. scibot 05 Apr 2022
      RRID:SCR_014982

      DOI: 10.1158/1078-0432.CCR-21-3764

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    aacrjournals.org/clincancerres/article/28/7/1422/682219/Frequency-and-Genomic-Aspects-of-Intrinsic
  56. Mar 2022
  57. elifesciences.org elifesciences.org
    Confined migration promotes cancer metastasis through resistance to anoikis and increased invasiveness
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    1. scibot 11 Mar 2022
      RRID:SCR_014982

      DOI: 10.7554/eLife.73150

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    elifesciences.org/articles/73150
  58. www.sciencedirect.com www.sciencedirect.com
    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
    1
    1. scibot 04 Mar 2022
      RRID:SCR_014982

      DOI: 10.1016/j.chembiol.2022.02.005

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    sciencedirect.com/science/article/pii/S2451945622000861
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Effect of Early-Stage Human Breast Carcinoma on Monocyte Programming
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    1. scibot 04 Mar 2022
      SCR_014982

      DOI: 10.3389/fonc.2021.800235

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    ncbi.nlm.nih.gov/pmc/articles/PMC8882686/
  60. Feb 2022
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates granzyme A and other knockout mouse studies
    2
    1. scibot 11 Feb 2022
      RRID:SCR_014982

      DOI: 10.7554/eLife.70207

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      DOI: 10.7554/eLife.70207

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    ncbi.nlm.nih.gov/pmc/articles/PMC8816380/
  62. Jan 2022
  63. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Modulation of the Human Pancreatic Ductal Adenocarcinoma Immune Microenvironment by Stereotactic Body Radiotherapy
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      DOI: 10.1158/1078-0432.CCR-21-2495

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  64. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
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      DOI: 10.1002/yea.3688

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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Normalization of cholesterol metabolism in spinal microglia alleviates neuropathic pain
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      DOI: 10.1084/jem.20202059

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    ncbi.nlm.nih.gov/pmc/articles/PMC8111462/
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MAP3K7 loss drives enhanced androgen signaling and independently confers risk of recurrence in prostate cancer with joint loss of CHD1
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      DOI: 10.1158/1541-7786.MCR-20-0913

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  67. Dec 2021
  68. www.sciencedirect.com www.sciencedirect.com
    Purification of astrocyte subtype based on a double reporter mice approach for downstream transcription profiling
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      DOI: 10.1016/j.xpro.2021.101009

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  69. www.cell.com www.cell.com
    MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
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      DOI: 10.1016/j.molcel.2021.11.016

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  70. Nov 2021
  71. www.sciencedirect.com www.sciencedirect.com
    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
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      DOI: 10.1016/j.molcel.2021.10.015

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  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of a novel FUS/ETV4 fusion and comparative analysis with other Ewing sarcoma fusion proteins
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      DOI: 10.1158/1541-7786.MCR-21-0354

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  73. Oct 2021
  74. www.sciencedirect.com www.sciencedirect.com
    Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells
    1
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      DOI: 10.1016/j.celrep.2021.109877

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  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenomic and Transcriptomic Dynamics During Human Heart Organogenesis
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      DOI: 10.1161/CIRCRESAHA.120.316704

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    ncbi.nlm.nih.gov/pmc/articles/PMC7554226/
  76. Aug 2021
  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
    1
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      DOI: 10.1016/j.cell.2018.08.067

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  78. Jul 2021
  79. link.springer.com link.springer.com
    Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance
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      DOI: 10.1007/s00401-019-02116-7

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  80. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
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      DOI: 10.1093/gigascience/giy158

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  81. www.sciencedirect.com www.sciencedirect.com
    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
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      DOI: 10.1016/j.ccell.2018.01.006

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  82. Jun 2021
  83. www.frontiersin.org www.frontiersin.org
    Monocytic Ontogeny of Regenerated Macrophages Characterizes the Mesotheliomagenic Responses to Carbon Nanotubes
    1
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      DOI: 10.3389/fimmu.2021.666107

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  84. Mar 2021
  85. elifesciences.org elifesciences.org
    HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration
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    1. scibot 12 Mar 2021
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      DOI: 10.7554/eLife.61531

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  86. Nov 2020
  87. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties
    1
    1. scibot 26 Nov 2020
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      DOI: 10.1016/j.celrep.2020.108382

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  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reprogramming of bone marrow myeloid progenitor cells in patients with severe coronary artery disease
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    1. scibot 21 Nov 2020
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      DOI: 10.7554/eLife.60939

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  89. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    A molecular map of lung neuroendocrine neoplasms
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      RRID:SCR_014982

      DOI: 10.1093/gigascience/giaa112

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  90. Oct 2020
  91. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes
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      RRID:SCR_014982

      DOI: 10.1186/s13073-020-00785-8

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  92. Sep 2020
  93. www.mdpi.com www.mdpi.com
    Silencing Core Spliceosome Sm Gene Expression Induces a Cytotoxic Splicing Switch in the Proteasome Subunit Beta 3 mRNA in Non-Small Cell Lung Cancer Cells
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      RRID:SCR_014982

      DOI: 10.3390/ijms21124192

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    mdpi.com/1422-0067/21/12/4192
  94. www.sciencedirect.com www.sciencedirect.com
    Failed Apoptosis Enhances Melanoma Cancer Cell Aggressiveness
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      DOI: 10.1016/j.celrep.2020.107731

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    sciencedirect.com/science/article/pii/S2211124720307117
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
    1
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      DOI: 10.1016/j.cell.2018.08.067

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  96. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Malignant Transformation Involving CXXC4 Mutations Identified in a Leukemic Progression Model of Severe Congenital Neutropenia
    1
    1. scibot 03 Sep 2020
      RRID:SCR_014982

      DOI: 10.1016/j.xcrm.2020.100074

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  97. Jan 2020
  98. www.sciencedirect.com www.sciencedirect.com
    Two Separation-of-Function Isoforms of Human TPP1 Dictate Telomerase Regulation in Somatic and Germ Cells
    1
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      RRID:SCR_014982

      DOI: 10.1016/j.celrep.2019.05.073

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    sciencedirect.com/science/article/pii/S2211124719307028
  99. www.sciencedirect.com www.sciencedirect.com
    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
    1
    1. scibot 13 Jan 2020
      RRID:SCR_014982

      DOI: 10.1016/j.celrep.2019.10.106

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    sciencedirect.com/science/article/pii/S2211124719314391
  100. www.sciencedirect.com www.sciencedirect.com
    Atlas of Subcellular RNA Localization Revealed by APEX-Seq
    1
    1. scibot 13 Jan 2020
      RRID:SCR_014982

      DOI: 10.1016/j.cell.2019.05.027

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    sciencedirect.com/science/article/pii/S0092867419305550
  101. www.sciencedirect.com www.sciencedirect.com
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      RRID:SCR_014982

      DOI: 10.1016/j.celrep.2019.01.041

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    sciencedirect.com/science/article/pii/S2211124719300592
  102. Nov 2018
  103. www.sciencedirect.com www.sciencedirect.com
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  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Drosophila Fezf coordinates laminar-specific connectivity through cell-intrinsic and cell-extrinsic mechanisms
    1
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      MultiQC

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    ncbi.nlm.nih.gov/pmc/articles/PMC5854465/
  105. Nov 2017
  106. academic.oup.com academic.oup.com
    Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation
    1
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      RRID:SCR_014982

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    academic.oup.com/gigascience/article/6/10/1/4091590/Transcriptional-mapping-of-the-primary