123 Matching Annotations
  1. Sep 2024
  2. www.sciencedirect.com www.sciencedirect.com
    A Global Transcriptional Atlas of the Effect of Acute Sleep Deprivation in the Mouse Frontal Cortex
    1
    1. scibot 16 Sep 2024
      RRID:SCR_015820

      DOI: 10.1016/j.isci.2024.110752

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    sciencedirect.com/science/article/pii/S2589004224019771
  3. Aug 2024
  4. www.nature.com www.nature.com
    Cellular anatomy of the mouse primary motor cortex
    1
    1. scibot 02 Aug 2024
      BICCN

      DOI: 10.1038/s41586-021-03970-w

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    nature.com/articles/s41586-021-03970-w
  5. www.frontiersin.org www.frontiersin.org
    The Spatial and Cell-Type Distribution of SARS-CoV-2 Receptor ACE2 in the Human and Mouse Brains
    1
    1. scibot 02 Aug 2024
      BICCN, https://biccn.org/

      DOI: 10.3389/fneur.2020.573095

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    frontiersin.org/articles/10.3389/fneur.2020.573095/full
  6. elifesciences.org elifesciences.org
    Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
    1
    1. scibot 02 Aug 2024
      https://biccn.org

      DOI: 10.7554/eLife.65482

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    elifesciences.org/articles/65482
  7. Jul 2024
  8. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Genoarchitectural Definition of the Adult Mouse Mesocortical Ring: A Contribution to Cortical Ring Theory
    1
    1. scibot 16 Jul 2024
      RRID:SCR_015820

      DOI: 10.1002/cne.25647

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    onlinelibrary.wiley.com/doi/10.1002/cne.25647
  9. Jun 2024
  10. www.nature.com www.nature.com
    AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures
    1
    1. scibot 30 Jun 2024
      BRAIN Initiative Cell Census Network

      DOI: 10.1038/s41597-023-02389-4

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      Curator: @evieth

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      DOI:10.1038/s41597-023-02389-4 RRID:SCR_015820
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    nature.com/articles/s41597-023-02389-4
  11. link.springer.com link.springer.com
    OME-Zarr: a cloud-optimized bioimaging file format with international community support
    1
    1. scibot 30 Jun 2024
      BRAIN Initiative Cell Census Network

      DOI: 10.1007/s00418-023-02209-1

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      DOI:10.1007/s00418-023-02209-1 RRID:SCR_015820
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    link.springer.com/article/10.1007/s00418-023-02209-1
  12. www.sciencedirect.com www.sciencedirect.com
    Harnessing computational spatial omics to explore the spatial biology intricacies
    1
    1. scibot 30 Jun 2024
      BICCN

      DOI: 10.1016/j.semcancer.2023.06.006

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      RRID:SCR_015820 DOI:10.1016/j.semcancer.2023.06.006
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    sciencedirect.com/science/article/pii/S1044579X23000974
  13. academic.oup.com academic.oup.com
    Learning single-cell chromatin accessibility profiles using meta-analytic marker genes
    1
    1. scibot 30 Jun 2024
      BRAIN Initiative Cell Census Network

      DOI: 10.1093/bib/bbac541

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      RRID:SCR_015820 DOI:10.1093/bib/bbac541
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    academic.oup.com/bib/article/24/1/bbac541/6957249
  14. www.nature.com www.nature.com
    Mapping human tissues with highly multiplexed RNA in situ hybridization
    1
    1. scibot 30 Jun 2024
      BICCN

      DOI: 10.1038/s41467-024-46437-y

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      RRID:SCR_015820 DOI:10.1038/s41467-024-46437-y
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    nature.com/articles/s41467-024-46437-y
  15. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single-cell and spatial alterations of neural cells and circuits in clinical and translational medicine
    1
    1. scibot 30 Jun 2024
      (BRAIN) Initiative—Cell Census Network (BICCN)

      DOI: 10.1002/ctm2.1696

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      RRID:SCR_015820 DOI:10.1002/ctm2.1696
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    onlinelibrary.wiley.com/doi/full/10.1002/ctm2.1696
  16. www.science.org www.science.org
    Integrated platform for multiscale molecular imaging and phenotyping of the human brain
    1
    1. scibot 30 Jun 2024
      RRID:SCR_015820

      DOI: 10.1126/science.adh9979

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    science.org/doi/10.1126/science.adh9979
  17. May 2024
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improving replicability in single-cell RNA-Seq cell type discovery with Dune
    1
    1. scibot 30 May 2024
      RRID:SCR_015820

      DOI: 10.1186/s12859-024-05814-6

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    ncbi.nlm.nih.gov/pmc/articles/PMC11127396/
  19. Apr 2024
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
    1
    1. scibot 30 Apr 2024
      RRID:SCR_015820

      DOI: 10.1038/s41467-024-47883-4

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    ncbi.nlm.nih.gov/pmc/articles/PMC11045777/
  21. Jan 2024
  22. www.biorxiv.org www.biorxiv.org
    The Brain Image Library: A Community-Contributed Microscopy Resource for Neuroscientists
    1
    1. scibot 23 Jan 2024
      BICCN

      DOI: 10.1101/2023.12.22.573024

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    biorxiv.org/content/10.1101/2023.12.22.573024v2
  23. www.nature.com www.nature.com
    Molecularly defined and spatially resolved cell atlas of the whole mouse brain
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1038/s41586-023-06808-9

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    nature.com/articles/s41586-023-06808-9
  24. www.science.org www.science.org
    A cellular resolution atlas of Broca’s area
    3
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adg3844

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    2. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adg3844

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    3. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adg3844

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    science.org/doi/10.1126/sciadv.adg3844
  25. www.science.org www.science.org
    A quest into the human brain
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adl0913

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    science.org/doi/10.1126/science.adl0913
  26. www.science.org www.science.org
    A family portrait of human brain cells
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adk4857

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    science.org/doi/10.1126/science.adk4857
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Diversity of primate brain cells unraveled
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adl0650

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    ncbi.nlm.nih.gov/pmc/articles/PMC10569699/
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omic profiling of the developing human cerebral cortex at the single-cell level
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adg3754

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    ncbi.nlm.nih.gov/pmc/articles/PMC10569714/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural and functional specializations of human fast-spiking neurons support fast cortical signaling
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.adf0708

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    ncbi.nlm.nih.gov/pmc/articles/PMC10569701/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human voltage-gated Na+ and K+ channel properties underlie sustained fast AP signaling
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/sciadv.ade3300

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    ncbi.nlm.nih.gov/pmc/articles/PMC10569700/
  31. www.science.org www.science.org
    A comparative atlas of single-cell chromatin accessibility in the human brain
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf7044

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    science.org/doi/10.1126/science.adf7044
  32. www.science.org www.science.org
    Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf6484

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    science.org/doi/10.1126/science.adf6484
  33. www.science.org www.science.org
    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf3786

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    science.org/doi/10.1126/science.adf3786
  34. www.science.org www.science.org
    Comprehensive cell atlas of the first-trimester developing human brain
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf1226

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    science.org/doi/10.1126/science.adf1226
  35. www.science.org www.science.org
    Single-cell analysis of prenatal and postnatal human cortical development
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf0834

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    science.org/doi/10.1126/science.adf0834
  36. www.science.org www.science.org
    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.adf0805

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    science.org/doi/10.1126/science.adf0805
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomics reveals human-specific cortical features
    1
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.ade9516

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    ncbi.nlm.nih.gov/pmc/articles/PMC10659116/
  38. www.science.org www.science.org
    Transcriptomic diversity of cell types across the adult human brain
    2
    1. scibot 13 Jan 2024
      BICCN

      DOI: 10.1126/science.add7046

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      RRID:SCR_015820

      DOI: 10.1126/science.add7046

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    science.org/doi/10.1126/science.add7046
  39. www.science.org www.science.org
    A single-cell genomic atlas for maturation of the human cerebellum during early childhood
    1
    1. scibot 13 Jan 2024
      BRAIN Initiative Cell Census Network (BICCN)

      DOI: 10.1126/scitranslmed.ade1283

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    science.org/doi/10.1126/scitranslmed.ade1283
  40. www.science.org www.science.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    1
    1. scibot 13 Jan 2024
      RRID:SCR_017266

      DOI: 10.1126/science.adf6812

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    science.org/doi/10.1126/science.adf6812
  41. www.biorxiv.org www.biorxiv.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    2
    1. scibot 13 Jan 2024
      RRID:SCR_017266

      DOI: 10.1101/2022.11.06.515349

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    2. scibot 13 Jan 2024
      RRID:SCR_015820

      DOI: 10.1101/2022.11.06.515349

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    biorxiv.org/content/10.1101/2022.11.06.515349v1
  42. Dec 2023
  43. www.nature.com www.nature.com
    Cellular atlases of the entire mouse brain
    1
    1. scibot 19 Dec 2023
      BICCN

      DOI: 10.1038/d41586-023-03781-1

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    nature.com/articles/d41586-023-03781-1
  44. www.nature.com www.nature.com
    Why mega brain project teams need to be talking to each other
    1
    1. scibot 19 Dec 2023
      BICCN

      DOI: 10.1038/d41586-023-03954-y

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    nature.com/articles/d41586-023-03954-y
  45. www.nature.com www.nature.com
    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
    1
    1. scibot 14 Dec 2023
      RRID:SCR_015820

      DOI: 10.1038/s41586-023-06812-z

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    nature.com/articles/s41586-023-06812-z
  46. www.nature.com www.nature.com
    BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
    1
    1. scibot 09 Dec 2023
      BICCN

      DOI: 10.1038/s41592-023-01848-5

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    nature.com/articles/s41592-023-01848-5
  47. www.sciencedirect.com www.sciencedirect.com
    Spatial transcriptomics
    1
    1. scibot 09 Dec 2023
      BICCN

      DOI: 10.1016/B978-0-323-91810-7.00019-4

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    sciencedirect.com/science/article/pii/B9780323918107000194
  48. www.biorxiv.org www.biorxiv.org
    AtOM, an ontology model for standardizing use of brain atlases in tools, workflows, and data infrastructures
    1
    1. scibot 09 Dec 2023
      BRAIN Initiative Cell Census Network

      DOI: 10.1101/2023.01.22.525049

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    biorxiv.org/content/10.1101/2023.01.22.525049v1
  49. journals.plos.org journals.plos.org
    Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool
    1
    1. scibot 09 Dec 2023
      BRAIN Initiative Cell Census Network

      DOI: 10.1371/journal.pone.0216796

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    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity
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    HypoMap—a unified single-cell gene expression atlas of the murine hypothalamus
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  62. journals.plos.org journals.plos.org
    A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases
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    Turning the Tide of Data Sharing
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    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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  69. Nov 2023
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    Extending and using anatomical vocabularies in the Stimulating Peripheral Activity to Relieve Conditions (SPARC) program
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  73. Oct 2023
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    A marmoset brain cell census reveals regional specialization of cellular identities
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    A Meta-Atlas of the Developing Human Cortex Identifies Modules Driving Cell Subtype Specification
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    Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
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    Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections
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    Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry
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  88. Aug 2023
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  90. Apr 2023
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    A Universal Method for Crossing Molecular and Atlas Modalities using Simplex-Based Image Varifolds and Quadratic Programming
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    Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding
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  94. Sep 2022
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    Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project
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  96. Jul 2022
  97. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Evolutionary innovations of human cerebral cortex viewed through the lens of high-throughput sequencing
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      RRID SCR_015820

      DOI: 10.1002/dneu.22893

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  98. Jun 2022
  99. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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      DOI: 10.1007/s00018-022-04378-z

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    ncbi.nlm.nih.gov/pmc/articles/PMC9164190/
  100. May 2022
  101. direct.mit.edu direct.mit.edu
    Neuronal classification from network connectivity via adjacency spectral embedding
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      https://biccn.org

      DOI: 10.1162/netn_a_00195

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    direct.mit.edu/netn/article/5/3/689/99842/Neuronal-classification-from-network-connectivity
  102. www.biorxiv.org www.biorxiv.org
    Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
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      DOI: 10.1101/675280

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    biorxiv.org/content/10.1101/675280v3
  103. www.biorxiv.org www.biorxiv.org
    Exploiting marker genes for robust classification and characterization of single-cell chromatin accessibility
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      DOI: 10.1101/2021.04.01.438068

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  104. www.biorxiv.org www.biorxiv.org
    EM-LDDMM for 3D to 2D registration
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      https://www.braininitiative.nih.gov/brain-programs/cell-census-network-biccn

      DOI: 10.1101/604405

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  105. www.biorxiv.org www.biorxiv.org
    SOAR: a spatial transcriptomics analysis resource to model spatial variability and cell type interactions
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      https://biccn.org/data)

      DOI: 10.1101/2022.04.17.488596

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  106. www.biorxiv.org www.biorxiv.org
    Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
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      DOI: 10.1101/2021.10.25.465795

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  107. www.biorxiv.org www.biorxiv.org
    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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      DOI: 10.1101/2020.02.29.970558

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    biorxiv.org/content/10.1101/2020.02.29.970558v2
  108. 52.53.155.43 52.53.155.43
    Extending and using anatomical vocabularies in the Stimulating Peripheral Activity to Relieve Conditions (SPARC) program
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      DOI: 10.1101/2021.11.15.467961

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  109. Apr 2022
  110. link.springer.com link.springer.com
    The Composition of Data Capital
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      DOI: 10.1007/978-3-030-60192-8_4

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  111. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells
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      DOI: 10.1016/j.neuron.2021.10.036

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  112. www.nature.com www.nature.com
    Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2)
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      DOI: 10.1038/s41596-021-00507-3

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  113. www.nature.com www.nature.com
    A multimodal cell census and atlas of the mammalian primary motor cortex
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  114. www.cambridge.org www.cambridge.org
    Using MERSCOPE to Generate a Cell Atlas of the Mouse Brain that Includes Lowly Expressed Genes
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  115. link.springer.com link.springer.com
    Farewell, Neuroinformatics!
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      DOI: 10.1007/s12021-021-09552-5

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  116. Nov 2021
  117. www.science.org www.science.org
    A ‘Rosetta Stone’ for neuroscience: new atlas helps define brain cell types
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      DOI: 10.1126/science.acx9297

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  118. www.nature.com www.nature.com
    A census of cell types in the brain’s motor cortex
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      DOI: 10.1038/d41586-021-02493-8

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  119. Oct 2021
  120. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Graded heterogeneity of metabotropic signaling underlies a continuum of cell-intrinsic temporal responses in unipolar brush cells
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      DOI: 10.1038/s41467-021-22893-8

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    ncbi.nlm.nih.gov/pmc/articles/PMC8497507/
  121. www.nature.com www.nature.com
    Neurobiological functions of transcriptional enhancers
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      DOI: 10.1038/s41593-019-0538-5

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  122. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Challenges of Processing and Analyzing Big Data in Mesoscopic Whole-brain Imaging
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    ncbi.nlm.nih.gov/pmc/articles/PMC6943785/
  123. www.nature.com www.nature.com
    Innovations present in the primate interneuron repertoire
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      DOI: 10.1038/s41586-020-2781-z

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  124. www.sciencedirect.com www.sciencedirect.com
    The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
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      DOI: 10.1016/j.cell.2020.04.007

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    sciencedirect.com/science/article/pii/S0092867420304025
  125. www.sciencedirect.com www.sciencedirect.com
    Computational Models of Interoception and Body Regulation
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      http://www.biccn.org

      DOI: 10.1016/j.tins.2020.09.012

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    sciencedirect.com/science/article/pii/S0166223620302204
  126. dl.acm.org dl.acm.org
    Cyberinfrastructure of a Multi-Petabyte Microscopy Resource for Neuroscience Research | Practice and Experience in Advanced Research Computing
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      https://biccn.org/Google Scholar

      DOI: 10.1145/3311790.3396653

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    dl.acm.org/doi/abs/10.1145/3311790.3396653
  127. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An atlas of cortical arealization identifies dynamic molecular signatures
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      DOI: 10.1038/s41586-021-03910-8

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    ncbi.nlm.nih.gov/pmc/articles/PMC8494648/
  128. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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      RRID:SCR_017266

      DOI: 10.1038/s41586-021-03465-8

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      DOI: 10.1038/s41586-021-03465-8

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    nature.com/articles/s41586-021-03465-8
  129. www.nature.com www.nature.com
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
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      DOI: 10.1038/s41586-021-03500-8

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    nature.com/articles/s41586-021-03500-8
  130. Sep 2021
  131. www.sciencedirect.com www.sciencedirect.com
    Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids
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      DOI: 10.1016/j.stem.2021.08.015

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    sciencedirect.com/science/article/pii/S1934590921003763
  132. Jul 2021
  133. www.nature.com www.nature.com
    Organization of the inputs and outputs of the mouse superior colliculus
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      RRID:SCR_015820

      DOI: 10.1038/s41467-021-24241-2

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  134. May 2021
  135. www.nature.com www.nature.com
    A community-based transcriptomics classification and nomenclature of neocortical cell types
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      BICCN; https://www.biccn.org

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  136. Apr 2021
  137. www.nature.com www.nature.com
    Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia
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      DOI: 10.1038/s41593-020-00794-1

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  138. Sep 2020
  139. link.springer.com link.springer.com
    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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      DOI: 10.1186/s40478-020-00908-7

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