143 Matching Annotations
  1. Oct 2025
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales
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    pmc.ncbi.nlm.nih.gov/articles/PMC12484866/
  3. Aug 2025
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A diverse landscape of FGFR alterations and co-mutations suggests potential therapeutic strategies in pediatric low-grade gliomas
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    pmc.ncbi.nlm.nih.gov/articles/PMC12314019/
  5. Jul 2025
  6. elifesciences.org elifesciences.org
    The BRAIN Initiative data-sharing ecosystem: Characteristics, challenges, benefits, and opportunities
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    elifesciences.org/articles/94000
  7. www.frontiersin.org www.frontiersin.org
    A brief history of somatostatin interneuron taxonomy or: how many somatostatin subtypes are there, really?
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    frontiersin.org/journals/neural-circuits/articles/10.3389/fncir.2024.1436915/full
  8. journals.sagepub.com journals.sagepub.com
    Glial changes and gene expression in Alzheimer's disease from snRNA-Seq and spatial transcriptomics - Songren Wei, Chenyang Li, Wenxuan Li, Fumiao Yuan, Jingjing Kong, Xi Su, Peng Huang, Hongbo Guo, Jiangping Xu, Haitao Sun, 2025
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    journals.sagepub.com/doi/full/10.1177/13872877251330320
  9. ieeexplore.ieee.org ieeexplore.ieee.org
    Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data
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    ieeexplore.ieee.org/abstract/document/11021027/
  10. ieeexplore.ieee.org ieeexplore.ieee.org
    AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language
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    ieeexplore.ieee.org/abstract/document/10825145/
  11. www.cjcnn.org www.cjcnn.org
    Progress on the application of supercomputer brain simulation technology | SUN | Chinese Journal of Contemporary Neurology and Neurosurgery
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    cjcnn.org/index.php/cjcnn/article/view/2988/2934
  12. www.science.org www.science.org
    SOAR elucidates biological insights and empowers drug discovery through spatial transcriptomics
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    science.org/doi/10.1126/sciadv.adt7450
  13. ieeexplore.ieee.org ieeexplore.ieee.org
    Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data
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    ieeexplore.ieee.org/abstract/document/11021027/
  14. www.biorxiv.org www.biorxiv.org
    CellScope: High-Performance Cell Atlas Workflow with Tree-Structured Representation
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    biorxiv.org/content/10.1101/2025.02.15.638400v1
  15. www.tandfonline.com www.tandfonline.com
    Hif-1α ablation reduces the efficiency of NeuroD1 gene-based therapy and aggravates the brain damage following ischemic stroke
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    tandfonline.com/doi/full/10.1080/17425247.2024.2435458
  16. www.annualreviews.org www.annualreviews.org
    Cell Type–Specific Studies of Human Tissue for Investigation of the Molecular Cell Biology of Late-Onset Neurodegenerative Disease
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    annualreviews.org/content/journals/10.1146/annurev-neuro-112723-025516
  17. Jun 2025
  18. europepmc.org europepmc.org
    Open Frontiers in Neural Cell Type Investigations; Lessons From <i>Caenorhabditis elegans</i> and Beyond, Toward a Multimodal Integration.
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    europepmc.org/article/pmc/pmc8934944
  19. Apr 2025
  20. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Integrated analysis of molecular atlases unveils modules driving developmental cell subtype specification in the human cortex
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    pmc.ncbi.nlm.nih.gov/articles/PMC12081304/
  21. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Developing a multiscale neural connectivity knowledgebase of the autonomic nervous system
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    pmc.ncbi.nlm.nih.gov/articles/PMC11949889/
  22. Feb 2025
  23. www.sciencedirect.com www.sciencedirect.com
    Molecular signature of primate astrocytes reveals pathways and regulatory changes contributing to human brain evolution
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    sciencedirect.com/science/article/pii/S1934590924004582
  24. Jan 2025
  25. www.nature.com www.nature.com
    Depth-corrected multi-factor dissection of chromatin accessibility for scATAC-seq data with PACS
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    nature.com/articles/s41467-024-55580-5
  26. Dec 2024
  27. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    xIV-LDDMM Toolkit: A Suite of Image-Varifold Based Technologies for Representing and Mapping 3D Imaging and Spatial-omics Data Simultaneously Across Scales
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    pmc.ncbi.nlm.nih.gov/articles/PMC11580965/
  28. Sep 2024
  29. www.sciencedirect.com www.sciencedirect.com
    A Global Transcriptional Atlas of the Effect of Acute Sleep Deprivation in the Mouse Frontal Cortex
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    sciencedirect.com/science/article/pii/S2589004224019771
  30. Aug 2024
  31. www.nature.com www.nature.com
    Cellular anatomy of the mouse primary motor cortex
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    nature.com/articles/s41586-021-03970-w
  32. www.frontiersin.org www.frontiersin.org
    The Spatial and Cell-Type Distribution of SARS-CoV-2 Receptor ACE2 in the Human and Mouse Brains
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    frontiersin.org/articles/10.3389/fneur.2020.573095/full
  33. elifesciences.org elifesciences.org
    Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
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    elifesciences.org/articles/65482
  34. Jul 2024
  35. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Genoarchitectural Definition of the Adult Mouse Mesocortical Ring: A Contribution to Cortical Ring Theory
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    onlinelibrary.wiley.com/doi/10.1002/cne.25647
  36. Jun 2024
  37. www.nature.com www.nature.com
    AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures
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    nature.com/articles/s41597-023-02389-4
  38. link.springer.com link.springer.com
    OME-Zarr: a cloud-optimized bioimaging file format with international community support
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    link.springer.com/article/10.1007/s00418-023-02209-1
  39. www.sciencedirect.com www.sciencedirect.com
    Harnessing computational spatial omics to explore the spatial biology intricacies
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    sciencedirect.com/science/article/pii/S1044579X23000974
  40. academic.oup.com academic.oup.com
    Learning single-cell chromatin accessibility profiles using meta-analytic marker genes
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    academic.oup.com/bib/article/24/1/bbac541/6957249
  41. www.nature.com www.nature.com
    Mapping human tissues with highly multiplexed RNA in situ hybridization
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    nature.com/articles/s41467-024-46437-y
  42. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single-cell and spatial alterations of neural cells and circuits in clinical and translational medicine
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    onlinelibrary.wiley.com/doi/full/10.1002/ctm2.1696
  43. www.science.org www.science.org
    Integrated platform for multiscale molecular imaging and phenotyping of the human brain
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    science.org/doi/10.1126/science.adh9979
  44. May 2024
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improving replicability in single-cell RNA-Seq cell type discovery with Dune
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    ncbi.nlm.nih.gov/pmc/articles/PMC11127396/
  46. Apr 2024
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
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    ncbi.nlm.nih.gov/pmc/articles/PMC11045777/
  48. Jan 2024
  49. www.biorxiv.org www.biorxiv.org
    The Brain Image Library: A Community-Contributed Microscopy Resource for Neuroscientists
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    biorxiv.org/content/10.1101/2023.12.22.573024v2
  50. www.nature.com www.nature.com
    Molecularly defined and spatially resolved cell atlas of the whole mouse brain
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    nature.com/articles/s41586-023-06808-9
  51. www.science.org www.science.org
    A cellular resolution atlas of Broca’s area
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    science.org/doi/10.1126/sciadv.adg3844
  52. www.science.org www.science.org
    A quest into the human brain
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    science.org/doi/10.1126/science.adl0913
  53. www.science.org www.science.org
    A family portrait of human brain cells
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    science.org/doi/10.1126/science.adk4857
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Diversity of primate brain cells unraveled
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569699/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omic profiling of the developing human cerebral cortex at the single-cell level
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569714/
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural and functional specializations of human fast-spiking neurons support fast cortical signaling
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569701/
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human voltage-gated Na+ and K+ channel properties underlie sustained fast AP signaling
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569700/
  58. www.science.org www.science.org
    A comparative atlas of single-cell chromatin accessibility in the human brain
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    science.org/doi/10.1126/science.adf7044
  59. www.science.org www.science.org
    Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex
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    science.org/doi/10.1126/science.adf6484
  60. www.science.org www.science.org
    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
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    science.org/doi/10.1126/science.adf3786
  61. www.science.org www.science.org
    Comprehensive cell atlas of the first-trimester developing human brain
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    science.org/doi/10.1126/science.adf1226
  62. www.science.org www.science.org
    Single-cell analysis of prenatal and postnatal human cortical development
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    science.org/doi/10.1126/science.adf0834
  63. www.science.org www.science.org
    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
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    science.org/doi/10.1126/science.adf0805
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomics reveals human-specific cortical features
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    ncbi.nlm.nih.gov/pmc/articles/PMC10659116/
  65. www.science.org www.science.org
    Transcriptomic diversity of cell types across the adult human brain
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    science.org/doi/10.1126/science.add7046
  66. www.science.org www.science.org
    A single-cell genomic atlas for maturation of the human cerebellum during early childhood
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    science.org/doi/10.1126/scitranslmed.ade1283
  67. www.science.org www.science.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    science.org/doi/10.1126/science.adf6812
  68. www.biorxiv.org www.biorxiv.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    biorxiv.org/content/10.1101/2022.11.06.515349v1
  69. Dec 2023
  70. www.nature.com www.nature.com
    Cellular atlases of the entire mouse brain
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    nature.com/articles/d41586-023-03781-1
  71. www.nature.com www.nature.com
    Why mega brain project teams need to be talking to each other
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    nature.com/articles/d41586-023-03954-y
  72. www.nature.com www.nature.com
    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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    nature.com/articles/s41586-023-06812-z
  73. www.nature.com www.nature.com
    BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
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    nature.com/articles/s41592-023-01848-5
  74. www.sciencedirect.com www.sciencedirect.com
    Spatial transcriptomics
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    sciencedirect.com/science/article/pii/B9780323918107000194
  75. www.biorxiv.org www.biorxiv.org
    AtOM, an ontology model for standardizing use of brain atlases in tools, workflows, and data infrastructures
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    biorxiv.org/content/10.1101/2023.01.22.525049v1
  76. journals.plos.org journals.plos.org
    Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool
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    journals.plos.org/plosone/article
  77. www.biorxiv.org www.biorxiv.org
    OME-Zarr: a cloud-optimized bioimaging file format with international community support
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    biorxiv.org/content/10.1101/2023.02.17.528834v4
  78. www.biorxiv.org www.biorxiv.org
    Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse
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    biorxiv.org/content/10.1101/2020.03.31.016972v2
  79. www.biorxiv.org www.biorxiv.org
    BigNeuron: A resource to benchmark and predict best-performing algorithms for automated reconstruction of neuronal morphology
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    biorxiv.org/content/10.1101/2022.05.10.491406v1
  80. www.biorxiv.org www.biorxiv.org
    Compressed sensing for imaging transcriptomics
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    biorxiv.org/content/10.1101/743039v2
  81. www.science.org www.science.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    science.org/doi/10.1126/science.adf6812
  82. www.biorxiv.org www.biorxiv.org
    Improving replicability in single-cell RNA-Seq cell type discovery with Dune
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    biorxiv.org/content/10.1101/2020.03.03.974220v2
  83. www.biorxiv.org www.biorxiv.org
    Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
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    biorxiv.org/content/10.1101/2022.11.30.518285v1
  84. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    science.org/doi/10.1126/sciadv.adh1914
  85. www.science.org www.science.org
    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    science.org/doi/10.1126/sciadv.adf6251
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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    ncbi.nlm.nih.gov/pmc/articles/PMC9164190/
  87. www.biorxiv.org www.biorxiv.org
    A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity
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    biorxiv.org/content/10.1101/2022.10.18.512442v2
  88. www.nature.com www.nature.com
    HypoMap—a unified single-cell gene expression atlas of the murine hypothalamus
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    nature.com/articles/s42255-022-00657-y
  89. journals.plos.org journals.plos.org
    A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases
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    journals.plos.org/plosbiology/article
  90. www.nature.com www.nature.com
    Compressed sensing for highly efficient imaging transcriptomics
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    nature.com/articles/s41587-021-00883-x
  91. elifesciences.org elifesciences.org
    Common cell type nomenclature for the mammalian brain
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    elifesciences.org/articles/59928
  92. link.springer.com link.springer.com
    Turning the Tide of Data Sharing
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    link.springer.com/article/10.1007/s12021-019-09437-8
  93. journals.plos.org journals.plos.org
    A guide to the BRAIN Initiative Cell Census Network data ecosystem
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    journals.plos.org/plosbiology/article
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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    ncbi.nlm.nih.gov/pmc/articles/PMC10081189/
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomics reveals human-specific cortical features
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    ncbi.nlm.nih.gov/pmc/articles/PMC10659116/
  96. Nov 2023
  97. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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    science.org/doi/10.1126/science.adf2359
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    ncbi.nlm.nih.gov/pmc/articles/PMC10631741/
  99. 52.53.155.43 52.53.155.43
    Extending and using anatomical vocabularies in the Stimulating Peripheral Activity to Relieve Conditions (SPARC) program
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    52.53.155.43/d4240805a0a9a6a581fb5d53d6f07042a213e027/2021.11.15.467961.full-html.html
  100. Oct 2023
  101. www.science.org www.science.org
    A marmoset brain cell census reveals regional specialization of cellular identities
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    science.org/doi/10.1126/sciadv.adk3986
  102. www.science.org www.science.org
    Single Cell DNA Methylation and 3D Genome Architecture in the Human Brain
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    science.org/doi/10.1126/science.adf5357
  103. www.science.org www.science.org
    Comparative transcriptomics reveals human-specific cortical features
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    science.org/doi/10.1126/science.ade9516
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569716/
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A marmoset brain cell census reveals regional specialization of cellular identities
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    ncbi.nlm.nih.gov/pmc/articles/PMC10569717/
  106. Sep 2023
  107. www.sciencedirect.com www.sciencedirect.com
    Harnessing computational spatial omics to explore the spatial biology intricacies
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    sciencedirect.com/science/article/pii/S1044579X23000974
  108. www.nature.com www.nature.com
    Anatomical and molecular characterization of parvalbumin-cholecystokinin co-expressing inhibitory interneurons: implications for neuropsychiatric conditions
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    nature.com/articles/s41380-023-02153-5
  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
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    ncbi.nlm.nih.gov/pmc/articles/PMC10584685/
  110. www.biorxiv.org www.biorxiv.org
    A Meta-Atlas of the Developing Human Cortex Identifies Modules Driving Cell Subtype Specification
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    biorxiv.org/content/10.1101/2023.09.12.557406v1
  111. www.biorxiv.org www.biorxiv.org
    Spatiotemporal molecular dynamics of the developing human thalamus
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    biorxiv.org/content/10.1101/2023.08.21.554174v1
  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
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  115. Aug 2023
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  117. Apr 2023
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  119. Dec 2022
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  121. Sep 2022
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  123. Jul 2022
  124. onlinelibrary.wiley.com onlinelibrary.wiley.com
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  125. Jun 2022
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  127. May 2022
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    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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  136. Apr 2022
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    The Composition of Data Capital
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    Using MERSCOPE to Generate a Cell Atlas of the Mouse Brain that Includes Lowly Expressed Genes
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  143. Nov 2021
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    A ‘Rosetta Stone’ for neuroscience: new atlas helps define brain cell types
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  146. Oct 2021
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    Graded heterogeneity of metabotropic signaling underlies a continuum of cell-intrinsic temporal responses in unipolar brush cells
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  157. Sep 2021
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    Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids
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  159. Jul 2021
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  161. May 2021
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  163. Apr 2021
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    Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia
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  165. Sep 2020
  166. link.springer.com link.springer.com
    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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