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Aug 2025
www.biorxiv.org www.biorxiv.org

Single-cell clonal lineage tracing identifies the transcriptional program controlling the cell fate decisions by neoantigen-specific CD8+ T cells

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1. scibot 22 Aug 2025
  
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  DOI: 10.1101/2025.08.13.670223
  
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biorxiv.org/content/10.1101/2025.08.13.670223v1
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Blocking CXCR4+ CD4+ T cells reprograms Treg-mediated immunosuppression via modulating the Rho-GTPase/NF-κB signaling axis

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1. scibot 07 Aug 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12323159/
Jul 2025
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Insights into human melanocyte development and characteristics through pluripotent stem cells combined with single-cell sequencing

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1. scibot 15 Jul 2025
  
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  DOI: 10.1016/j.isci.2025.112373
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12245449/
Jun 2025
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Single-Cell Transcriptomic Landscape Deciphers Intratumoral Heterogeneity and Subtypes of Acral and Mucosal Melanomas

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1. scibot 17 Jun 2025
  
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  DOI: 10.1158/1078-0432.CCR-24-3164
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12163602/
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SpatialSNV: A novel method for identifying and analyzing spatially resolved SNVs in tumor microenvironments

1
1. scibot 17 Jun 2025
  
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  DOI: 10.1093/gigascience/giaf065
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12166308/
May 2025
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An integrated analysis of scRNA-seq and RNA-seq data revealed metastasis-related regulators as prognostic indicators in lung adenocarcinoma

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1. scibot 22 May 2025
  
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  DOI: 10.21037/jtd-2025-482
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12090110/
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Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex

1
1. scibot 22 May 2025
  
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  DOI: 10.1016/j.neuron.2025.04.025
  
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sciencedirect.com/science/article/pii/S0896627325003083
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MCRS1 sensitizes T cell–dependent immunotherapy by augmenting MHC-I expression in solid tumors

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1. scibot 19 May 2025
  
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  DOI: 10.1084/jem.20240959
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11572484/
Apr 2025
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Spatially Resolved Tumor Ecosystems and Cell States in Gastric Adenocarcinoma Progression and Evolution

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1. scibot 04 Apr 2025
  
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  DOI: 10.1158/2159-8290.CD-24-0605
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11962405/
Mar 2025
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PDF-html.html

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1. scibot 26 Mar 2025
  
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52.53.155.43/dee9a06bd4d5f7e409990fffe7937b86e5d2a784/PDF-html.html
Feb 2025
aacrjournals.org aacrjournals.org

Crosstalk between myeloid and B cells shapes the distinct microenvironments of primary and secondary liver cancer

1
1. scibot 13 Feb 2025
  
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  DOI: 10.1158/0008-5472.CAN-23-0193
  
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aacrjournals.org/cancerres/article/83/21/3544/729719/Cross-talk-between-Myeloid-and-B-Cells-Shapes-the
Jan 2025
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Phenotypic plasticity and increased infiltration of peripheral blood-derived TREM1+ mono-macrophages following radiotherapy in rectal cancer

1
1. scibot 14 Jan 2025
  
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  DOI: 10.1016/j.xcrm.2024.101887
  
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sciencedirect.com/science/article/pii/S266637912400658X
Sep 2024
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CXCR4 orchestrates the TOX-programmed exhausted phenotype of CD8+ T cells via JAK2/STAT3 pathway

1
1. scibot 26 Sep 2024
  
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  DOI: 10.1016/j.xgen.2024.100659
  
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sciencedirect.com/science/article/pii/S2666979X24002702
Aug 2024
www.cell.com www.cell.com

Single-cell dissection of the human blood-brain barrier and glioma blood-tumor barrier

1
1. scibot 27 Aug 2024
  
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  DOI: 10.1016/j.neuron.2024.07.026
  
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cell.com/neuron/fulltext/S0896-6273(24)00571-3
Dec 2023
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Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma

1
1. scibot 16 Dec 2023
  
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  DOI: 10.1016/j.ccell.2023.11.010
  
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sciencedirect.com/science/article/pii/S1535610823004014
Nov 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals

1
1. scibot 26 Nov 2023
  
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  DOI: 10.7554/eLife.91406
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10662950/
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Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve

1
1. scibot 18 Nov 2023
  
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  DOI: 10.1016/j.neuron.2023.10.025
  
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sciencedirect.com/science/article/pii/S0896627323008061
Oct 2023
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Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm

1
1. scibot 27 Oct 2023
  
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  DOI: 10.1016/j.celrep.2023.113289
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10704487/
Aug 2023
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Single-cell analysis of the developing human ovary defines distinct insights into ovarian somatic and germline progenitors

1
1. scibot 16 Aug 2023
  
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  DOI: 10.1016/j.devcel.2023.07.014
  
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sciencedirect.com/science/article/pii/S1534580723003611
dx.doi.org dx.doi.org

Integrative single-cell and bulk transcriptomes analyses identify intrinsic HNSCC subtypes with distinct prognoses and therapeutic vulnerabilities

2
1. scibot 04 Aug 2023
  
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  DOI: 10.1158/1078-0432.CCR-22-3563
  
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  DOI: 10.1158/1078-0432.CCR-22-3563
  
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dx.doi.org/10.1158/1078-0432.CCR-22-3563
52.53.155.43 52.53.155.43

can-23-0193-html.html

1
1. scibot 04 Aug 2023
  
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  DOI: 10.1158/0008-5472.can-23-0193
  
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52.53.155.43/724675bb87e06403c590d0acecc9940852845416/can-23-0193-html.html
Jul 2023
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Temporal transcriptome features identify early skeletal commitment during human epiphysis development at single-cell resolution

1
1. scibot 29 Jul 2023
  
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  DOI: 10.1016/j.isci.2023.107200
  
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sciencedirect.com/science/article/pii/S2589004223012774
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sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons

1
1. scibot 21 Jul 2023
  
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  DOI: 10.1016/j.isci.2023.107342
  
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sciencedirect.com/science/article/pii/S2589004223014190
Jun 2023
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Transcriptomic landscape of early hair follicle and epidermal development

1
1. scibot 23 Jun 2023
  
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  DOI: 10.1016/j.celrep.2023.112643
  
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sciencedirect.com/science/article/pii/S221112472300654X
May 2023
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Developmental dynamics of chromatin accessibility during post-implantation development of monkey embryos

1
1. scibot 27 May 2023
  
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  DOI: 10.1093/gigascience/giad038
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10209733/
Jan 2023
52.53.155.43 52.53.155.43

SSRN-id4236792-html.html

1
1. scibot 14 Jan 2023
  
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  DOI: 10.2139/ssrn.4236792
  
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52.53.155.43/f804482cc7cebef00c72524b3620589e015133ca/SSRN-id4236792-html.html
Dec 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Single-cell RNA sequencing uncovers dynamic roadmap and cell-cell communication during buffalo spermatogenesis

1
1. scibot 30 Dec 2022
  
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  DOI: 10.1016/j.isci.2022.105733
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9793287/
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Nail-associated mesenchymal cells contribute to and are essential for dorsal digit tip regeneration

1
1. scibot 24 Dec 2022
  
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  DOI: 10.1016/j.celrep.2022.111853
  
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sciencedirect.com/science/article/pii/S2211124722017454
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Dental niche cells directly contribute to tooth reconstitution and morphogenesis

1
1. scibot 08 Dec 2022
  
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  DOI: 10.1016/j.celrep.2022.111737
  
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sciencedirect.com/science/article/pii/S2211124722016151
Oct 2022
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Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

1
1. scibot 11 Oct 2022
  
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  DOI: 10.1186/s12967-022-03661-8
  
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link.springer.com/article/10.1186/s12967-022-03661-8
Aug 2022
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Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors

1
1. scibot 31 Aug 2022
  
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  DOI: 10.1016/j.celrep.2022.111289
  
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sciencedirect.com/science/article/pii/S2211124722011093
Jul 2022
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Prediction of cellular targets in diabetic kidney diseases with single-cell transcriptomic analysis of db/db mouse kidneys

1
1. scibot 12 Jul 2022
  
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  DOI: 10.1007/s12079-022-00685-z
  
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link.springer.com/article/10.1007/s12079-022-00685-z
Jun 2022
www.frontiersin.org www.frontiersin.org

Digital Cell Atlas of Mouse Uterus: From Regenerative Stage to Maturational Stage

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1. scibot 09 Jun 2022
  
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  DOI: 10.3389/fgene.2022.847646
  
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frontiersin.org/article/10.3389/fgene.2022.847646/full
Apr 2022
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HER2 isoforms uniquely program intratumor heterogeneity and predetermine breast cancer trajectories during the occult tumorigenic phase

1
1. scibot 02 Apr 2022
  
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  DOI: 10.1158/1541-7786.MCR-21-0215
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8507429/
Jan 2022
elifesciences.org elifesciences.org

Evolutionary transcriptomics implicates new genes and pathways in human pregnancy and adverse pregnancy outcomes

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1. scibot 13 Jan 2022
  
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  DOI: 10.7554/eLife.69584
  
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elifesciences.org/articles/69584
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Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential

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Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation

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  DOI: 10.1016/j.immuni.2021.08.028
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6486482/
Jul 2021
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A scalable platform for the development of cell-type-specific viral drivers

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1. scibot 30 Jul 2021
  
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  DOI: 10.7554/eLife.48089
  
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Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics

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  DOI: 10.1016/j.stem.2018.10.010
  
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Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis

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Single-Cell RNA Sequencing Reveals Tissue Compartment-Specific Plasticity of Mycosis Fungoides Tumor Cells

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  DOI: 10.3389/fimmu.2021.666935
  
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Generation of hypothalamic arcuate organoids from human induced pluripotent stem cells

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A single-cell analysis of the Arabidopsis vegetative shoot apex

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  DOI: 10.1016/j.devcel.2021.02.021
  
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Cascade diversification directs generation of neuronal diversity in the hypothalamus

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Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma

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Prediction of single-cell gene expression for transcription factor analysis

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Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network

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  DOI: 10.1016/j.cell.2019.01.040
  
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  DOI: 10.1016/j.celrep.2019.03.104
  
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