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DeMBA: a developmental atlas for navigating the mouse brain in space and time

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1. scibot 06 Sep 2025
  
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  DOI: 10.1038/s41467-025-63177-9
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12397216/
Jun 2025
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Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice

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1. scibot 18 Jun 2025
  
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  DOI: 10.1016/j.celrep.2025.115827
  
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sciencedirect.com/science/article/pii/S2211124725005984
Apr 2025
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An orexin-sensitive subpopulation of layer 6 neurons regulates cortical excitability and anxiety behaviour

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1. scibot 18 Apr 2025
  
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  DOI: 10.1038/s41398-025-03350-2
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11997144/
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Differences in Cajal-Retzius cell density and postnatal persistence across cortical areas revealed by a novel intersectional genetic labeling approach

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1. scibot 13 Apr 2025
  
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  DOI: 10.1101/2025.04.09.647949
  
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biorxiv.org/content/10.1101/2025.04.09.647949v1
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DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning

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1. scibot 03 Apr 2025
  
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  DOI: 10.1038/s41593-025-01923-4
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12081306/
Mar 2025
www.biorxiv.org www.biorxiv.org

Seed structure and phosphorylation in the fuzzy coat impact tau seeding competency

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1. scibot 14 Mar 2025
  
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  DOI: 10.1101/2025.03.07.642026
  
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biorxiv.org/content/10.1101/2025.03.07.642026v1
Feb 2025
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Network analysis of α-synuclein pathology progression reveals p21-activated kinases as regulators of vulnerability

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1. scibot 07 Feb 2025
  
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  DOI: 10.1101/2024.10.22.619411
  
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biorxiv.org/content/10.1101/2024.10.22.619411v1
Nov 2024
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Localization of brain neuronal IL-1R1 reveals specific neural circuitries responsive to immune signaling

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1. scibot 21 Nov 2024
  
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  DOI: 10.1186/s12974-024-03287-1
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11575132/
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Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization

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1. scibot 17 Nov 2024
  
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  DOI: 10.1038/s41597-024-04060-y
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11557934/
Oct 2024
www.nature.com www.nature.com

Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

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1. scibot 02 Oct 2024
  
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  DOI: 10.1038/s41597-024-03863-3
  
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nature.com/articles/s41597-024-03863-3
Aug 2024
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Visual experience reduces the spatial redundancy between cortical feedback inputs and primary visual cortex neurons

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1. scibot 21 Aug 2024
  
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  DOI: 10.1016/j.neuron.2024.07.009
  
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sciencedirect.com/science/article/pii/S0896627324005312
Jul 2024
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An orexin-sensitive subpopulation of layer 6 neurons regulates cortical excitability and anxiety behaviour

1
1. scibot 30 Jul 2024
  
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  DOI: 10.1101/2024.07.25.605138
  
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biorxiv.org/content/10.1101/2024.07.25.605138v1
May 2024
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Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

1
1. scibot 23 May 2024
  
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  DOI: 10.1038/s42003-024-06242-1
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11106287/
Mar 2024
www.nature.com www.nature.com

Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology

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1. scibot 28 Mar 2024
  
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  DOI: 10.1038/s41467-024-47027-8
  
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nature.com/articles/s41467-024-47027-8
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A topographical atlas of α-synuclein dosage and cell type-specific expression in adult mouse brain and peripheral organs

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1. scibot 22 Mar 2024
  
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  DOI: 10.1038/s41531-024-00672-8
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10951202/
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

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1. scibot 28 Feb 2024
  
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  DOI: 10.3389/fninf.2024.1284107
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10884250/
dx.doi.org dx.doi.org

Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex

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1. scibot 08 Feb 2024
  
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  DOI: 10.1093/cercor/bhae002
  
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dx.doi.org/10.1093/cercor/bhae002
Sep 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

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1. scibot 28 Sep 2023
  
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  RRID:SCR_01685421
  
  DOI: 10.1038/s41467-023-41645-4
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10514056/
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The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain

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1. scibot 22 Sep 2023
  
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  DOI: 10.1038/s41597-023-02527-y
  
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nature.com/articles/s41597-023-02527-y
Jul 2023
www.sciencedirect.com www.sciencedirect.com

A comprehensive atlas of perineuronal net distribution and colocalization with parvalbumin in the adult mouse brain

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1. scibot 13 Jul 2023
  
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  DOI: 10.1016/j.celrep.2023.112788
  
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sciencedirect.com/science/article/pii/S2211124723007994
Jun 2023
www.biorxiv.org www.biorxiv.org

Neural correlates of object identity and reward outcome in the corticohippocampal hierarchy: double dissociation between perirhinal and secondary visual cortex

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1. scibot 01 Jun 2023
  
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  DOI: 10.1101/2023.05.24.542117
  
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biorxiv.org/content/10.1101/2023.05.24.542117v1
May 2023
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Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus

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1. scibot 02 May 2023
  
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  RRID:SCR_016854
  
  DOI: 10.1093/cercor/bhad111
  
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academic.oup.com/cercor/advance-article/doi/10.1093/cercor/bhad111/7146577
Mar 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia

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1. scibot 24 Mar 2023
  
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  DOI: 10.1038/s41597-023-02012-6
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10030855/
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Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

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1. scibot 22 Mar 2023
  
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  RRID:SCR_016854
  
  DOI: 10.1101/2023.02.27.530226
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10002670/
Nov 2022
www.science.org www.science.org

Atlas-based data integration for mapping the connections and architecture of the brain

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1. scibot 08 Nov 2022
  
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  RRID:SCR_016854
  
  DOI: 10.1126/science.abq2594
  
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science.org/doi/10.1126/science.abq2594
Sep 2022
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Cardiovascular baroreflex circuit moonlights in sleep control

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1. scibot 29 Sep 2022
  
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  DOI: 10.1016/j.neuron.2022.08.027
  
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sciencedirect.com/science/article/pii/S0896627322008029
May 2022
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Ripple-selective GABAergic projection cells in the hippocampus

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1. scibot 05 May 2022
  
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  DOI: 10.1016/j.neuron.2022.04.002
  
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sciencedirect.com/science/article/pii/S0896627322003105
Apr 2022
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DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains

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1. scibot 23 Apr 2022
  
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  DOI: 10.1038/s41597-022-01268-8
  
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nature.com/articles/s41597-022-01268-8
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1

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1. scibot 13 Apr 2022
  
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  DOI: 10.1242/dev.200026
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8959144/
Apr 2021
www.jneurosci.org www.jneurosci.org

Network asynchrony underlying increased broadband gamma power

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1. scibot 08 Apr 2021
  
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  DOI: 10.1523/JNEUROSCI.2250-20.2021
  
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jneurosci.org/content/41/13/2944
Nov 2020
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Phasic Activation of Dorsal Raphe Serotonergic Neurons Increases Pupil Size

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1. scibot 17 Nov 2020
  
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  DOI: 10.1016/j.cub.2020.09.090
  
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sciencedirect.com/science/article/pii/S0960982220315037
Sep 2020
www.nature.com www.nature.com

Database of literature derived cellular measurements from the murine basal ganglia

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1. scibot 26 Sep 2020
  
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  DOI: 10.1038/s41597-020-0550-3
  
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nature.com/articles/s41597-020-0550-3
Jan 2020
journals.plos.org journals.plos.org

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool

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1. scibot 13 Jan 2020
  
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  DOI: 10.1371/journal.pone.0216796
  
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journals.plos.org/plosone/article
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Untitled document

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1. scibot 13 Jan 2020
  
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  DOI: 10.1016/j.neuroimage.2019.05.016
  
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sciencedirect.com/science/article/pii/S1053811919303994