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Systems mapping of intra-donor, cross-tissue T cell clonal expansion and tissue adaptation in the gut-liver-blood axis

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1. scibot 30 Jan 2026
  
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  DOI: 10.1016/j.celrep.2025.116916
  
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sciencedirect.com/science/article/pii/S2211124725016882
Jan 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

TET2-loss enhances immediate and time-resolved IFNγ signaling responses across myeloid differentiation

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1. scibot 23 Jan 2026
  
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  DOI: 10.1016/j.exphem.2025.104727
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12445325/
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Rhinovirus triggers distinct host responses through differential engagement of epithelial innate immune signaling

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1. scibot 22 Jan 2026
  
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  DOI: 10.1016/j.cpblue.2025.100001
  
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sciencedirect.com/science/article/pii/S3051383925000015
elifesciences.org elifesciences.org

Direct lineage conversion of postnatal mouse cortical astrocytes to oligodendrocyte lineage cells

1
1. scibot 08 Jan 2026
  
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  DOI: 10.7554/eLife.98632.2
  
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elifesciences.org/reviewed-preprints/98632
Dec 2025
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CD146+CAFs mediate immunosuppression in gastric cancer via COL4A1: potential therapeutic targets

1
1. scibot 23 Dec 2025
  
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  DOI: 10.1136/jitc-2025-013577
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12718570/
Aug 2025
www.nature.com www.nature.com

Endocardial primary cilia and blood flow regulate EndoMT during endocardial cushion development

1
1. scibot 30 Aug 2025
  
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  DOI: 10.1038/s44161-025-00697-z
  
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nature.com/articles/s44161-025-00697-z
Jul 2025
www.cell.com www.cell.com

Imeglimin suppresses glucagon secretion and induces a loss of α cell identity

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1. scibot 29 Jul 2025
  
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  DOI: 10.1016/j.xcrm.2025.102254
  
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cell.com/cell-reports-medicine/fulltext/S2666-3791(25)00327-1
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Dissecting FAP+ Cell Diversity in Pancreatic Cancer Uncovers an Interferon-Response Subtype of Cancer-Associated Fibroblasts with Tumor-Restraining Properties

1
1. scibot 04 Jul 2025
  
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  DOI: 10.1158/0008-5472.CAN-23-3252
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12214878/
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Spatial determinants of tumor cell dedifferentiation and plasticity in primary cutaneous melanoma

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1. scibot 01 Jul 2025
  
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  DOI: 10.1101/2025.06.21.660851
  
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biorxiv.org/content/10.1101/2025.06.21.660851v1
Jun 2025
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Transcription factor T-bet regulates the maintenance and differentiation potential of lymph node and lung effector memory B cell subsets

1
1. scibot 24 Jun 2025
  
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  DOI: 10.1016/j.immuni.2025.05.021
  
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sciencedirect.com/science/article/pii/S1074761325002420
May 2025
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Direct microglia replacement reveals pathologic and therapeutic contributions of brain macrophages to a monogenic neurological disease

1
1. scibot 17 May 2025
  
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  DOI: 10.1016/j.immuni.2025.03.019
  
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sciencedirect.com/science/article/pii/S1074761325001384
Feb 2025
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Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia

1
1. scibot 27 Feb 2025
  
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  DOI: 10.1101/2025.01.21.25320683
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11838931/
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A developmental atlas of mouse vestibular-like inner ear organoids

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1. scibot 04 Feb 2025
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.isci.2025.111817
  
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sciencedirect.com/science/article/pii/S258900422500077X
Jan 2025
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1-s2.0-S2589004225001312-main-html.html

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1. scibot 24 Jan 2025
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.isci.2025.111871
  
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52.53.155.43/4ef224fc0d11d1f1be42f83750345698062e5cc5/1-s2.0-S2589004225001312-main-html.html
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Phenotypic plasticity and increased infiltration of peripheral blood-derived TREM1+ mono-macrophages following radiotherapy in rectal cancer

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1. scibot 14 Jan 2025
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.xcrm.2024.101887
  
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sciencedirect.com/science/article/pii/S266637912400658X
Dec 2024
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Expanding GABAergic Neuronal Diversity in iPSC-Derived Disease Models

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1. scibot 28 Dec 2024
  
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  RRID:SCR_017012
  
  DOI: 10.1101/2024.12.03.626438
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11642846/
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Exploring the Role of Ccn3 in Type III Cell of Mice Taste Buds

1
1. scibot 27 Dec 2024
  
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  RRID:SCR_017012
  
  DOI: 10.1111/jnc.16291
  
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onlinelibrary.wiley.com/doi/full/10.1111/jnc.16291
elifesciences.org elifesciences.org

Single-cell transcriptomics of vomeronasal neuroepithelium reveals a differential endoplasmic reticulum environment amongst neuronal subtypes

1
1. scibot 20 Dec 2024
  
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  RRID:SCR_017012
  
  DOI: 10.7554/eLife.98250
  
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elifesciences.org/articles/98250
Oct 2024
aacrjournals.org aacrjournals.org

H3.3 G34W Promotes Growth and Impedes Differentiation of Osteoblast-Like Mesenchymal Progenitors in Giant Cell Tumor of Bone

1
1. scibot 02 Oct 2024
  
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  RRID:SCR_017012
  
  DOI: 10.1158/2159-8290.CD-20-0461
  
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aacrjournals.org/cancerdiscovery/article/10/12/1968/2414/H3-3-G34W-Promotes-Growth-and-Impedes
May 2024
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Phenotypic and spatial heterogeneity of brain myeloid cells after stroke is associated with cell ontogeny, tissue damage, and brain connectivity

1
1. scibot 21 May 2024
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2024.114250
  
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sciencedirect.com/science/article/pii/S2211124724005783
Dec 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles

1
1. scibot 20 Dec 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1186/s13059-023-03129-y
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10726524/
Oct 2023
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Cerebral organoids derived from patients with Alzheimer’s disease with PSEN1/2 mutations have defective tissue patterning and altered development

1
1. scibot 27 Oct 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2023.113310
  
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sciencedirect.com/science/article/pii/S2211124723013220
Sep 2023
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Single-cell profiling of murine bladder cancer identifies sex-specific transcriptional signatures with prognostic relevance

1
1. scibot 07 Sep 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.isci.2023.107703
  
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sciencedirect.com/science/article/pii/S2589004223017807
Aug 2023
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Homeostatic PD-1 signaling restrains EOMES-dependent oligoclonal expansion of liver-resident CD8 T cells

2
1. scibot 12 Aug 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2023.112876
  
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2. scibot 10 Aug 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2023.112876
  
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52.53.155.43/7d9bf3333b9425342ca4204697d643342388db9f/PIIS2211124723008872-html.html
dx.doi.org dx.doi.org

Integrative single-cell and bulk transcriptomes analyses identify intrinsic HNSCC subtypes with distinct prognoses and therapeutic vulnerabilities

2
1. scibot 04 Aug 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1158/1078-0432.CCR-22-3563
  
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2. scibot 04 Aug 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1158/1078-0432.CCR-22-3563
  
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dx.doi.org/10.1158/1078-0432.CCR-22-3563
Jul 2023
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Lymph node medulla regulates the spatiotemporal unfolding of resident dendritic cell networks

1
1. scibot 21 Jul 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.immuni.2023.06.020
  
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pmc.ncbi.nlm.nih.gov/articles/PMC10433941/
Jun 2023
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Autism-linked UBE3A gain-of-function mutation causes interneuron and behavioral phenotypes when inherited maternally or paternally in mice

1
1. scibot 30 Jun 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2023.112706
  
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sciencedirect.com/science/article/pii/S2211124723007179
May 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Developmental dynamics of chromatin accessibility during post-implantation development of monkey embryos

1
1. scibot 27 May 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1093/gigascience/giad038
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10209733/
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An in vivo neuroimmune organoid model to study human microglia phenotypes

1
1. scibot 12 May 2023
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.cell.2023.04.022
  
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sciencedirect.com/science/article/pii/S009286742300418X
Sep 2022
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Sublethal cytochrome c release generates drug-tolerant persister cells

1
1. scibot 03 Sep 2022
  
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  DOI: 10.1016/j.cell.2022.07.025
  
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sciencedirect.com/science/article/pii/S0092867422009783
Apr 2022
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Type 1 conventional dendritic cells maintain and guide the differentiation of precursors of exhausted T cells in distinct cellular niches

1
1. scibot 07 Apr 2022
  
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  SCR_017012
  
  DOI: 10.1016/j.immuni.2022.03.006
  
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sciencedirect.com/science/article/pii/S1074761322001297
Mar 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Transcriptional heterogeneity of ventricular zone cells in the ganglionic eminences of the mouse forebrain

1
1. scibot 03 Mar 2022
  
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  RRID:SCR_017012
  
  DOI: 10.7554/eLife.71864
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8887903/
Dec 2021
elifesciences.org elifesciences.org

Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development

1
1. scibot 21 Dec 2021
  
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  RRID:SCR_017012
  
  DOI: 10.7554/eLife.70246
  
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elifesciences.org/articles/70246
Jun 2021
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Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells

1
1. scibot 23 Jun 2021
  
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  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2021.109286
  
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sciencedirect.com/science/article/pii/S2211124721006574
May 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)

1
1. scibot 01 May 2021
  
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  RRID:SCR_017012
  
  DOI: 10.7554/eLife.58591
  
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RRID:SCR_017012

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8064760/
Feb 2021
www.jimmunol.org www.jimmunol.org

Transcriptional Diversity and Niche-Specific Distribution of Leukocyte Populations during Staphylococcus aureus Craniotomy-Associated Biofilm Infection

1
1. scibot 24 Feb 2021
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.4049/jimmunol.2001042
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRID:SCR_017012 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

jimmunol.org/content/206/4/751
www.sciencedirect.com www.sciencedirect.com

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population

1
1. scibot 24 Feb 2021
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.1016/j.stem.2021.01.003
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRID:SCR_017012 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

sciencedirect.com/science/article/pii/S1934590921000035
Jan 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila

1
1. scibot 08 Jan 2021
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.7554/eLife.59095
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_017012
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC7785293/
Dec 2020
www.sciencedirect.com www.sciencedirect.com

Large-scale Generation of Functional and Transplantable Hepatocytes and Cholangiocytes from Human Endoderm Stem Cells

1
1. scibot 12 Dec 2020
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.1016/j.celrep.2020.108455
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRIDCUR:Validated RRID:SCR_017012
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

sciencedirect.com/science/article/pii/S2211124720314443
Sep 2020
www.sciencedirect.com www.sciencedirect.com

SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks

1
1. scibot 26 Sep 2020
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.1016/j.cels.2020.08.003
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRID:SCR_017012 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

sciencedirect.com/science/article/pii/S2405471220302878
www.sciencedirect.com www.sciencedirect.com

Single-Cell Analyses Identify Dysfunctional CD16+ CD8 T Cells in Smokers

1
1. scibot 09 Sep 2020
  
  in Public
  
  RRID:SCR_017012
  
  DOI: 10.1016/j.xcrm.2020.100054
  
  Resource: Slingshot (RRID:SCR_017012)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_017012
  
  What is this?
  
  RRID:SCR_017012 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_017012

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scibot

URL

sciencedirect.com/science/article/pii/S2666379120300707