36 Matching Annotations
  1. Last 7 days
  2. www.biorxiv.org www.biorxiv.org
    PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
    1
    1. scibot 16 Jul 2024
      RRID:SCR_017016

      DOI: 10.1101/2024.06.26.600753

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    biorxiv.org/content/10.1101/2024.06.26.600753v1
  3. Jul 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce
    1
    1. scibot 14 Jul 2024
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giae043

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    ncbi.nlm.nih.gov/pmc/articles/PMC11238431/
  5. May 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata)
    1
    1. scibot 17 May 2024
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.118

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    ncbi.nlm.nih.gov/pmc/articles/PMC11091235/
  7. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    1. scibot 10 May 2024
      RRID:SCR_017016

      DOI: 10.1101/2024.02.19.579948

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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  8. Apr 2024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Snakemake workflows for long-read bacterial genome assembly and evaluation
    1
    1. scibot 10 Apr 2024
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.116

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    ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
  10. www.sciencedirect.com www.sciencedirect.com
    Identification and characterisation of moderately thermostable diisobutyl phthalate degrading esterase from a Great Artesian Basin Bacillus velezensis NP05
    1
    1. scibot 09 Apr 2024
      RRID:SCR_017016

      DOI: 10.1016/j.btre.2024.e00840

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    sciencedirect.com/science/article/pii/S2215017X24000134
  11. Mar 2024
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
    1. scibot 03 Mar 2024
      SCR_017016

      DOI: 10.1093/gigascience/giae004

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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  13. Jan 2024
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
    1. scibot 20 Jan 2024
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  15. Sep 2023
  16. 52.53.155.43 52.53.155.43
    jkad203-html.html
    1
    1. scibot 22 Sep 2023
      RRID:SCR_017016

      DOI: 10.1093/g3journal/jkad203

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    52.53.155.43/213eef494e744243d5c25ee25ef9fbca7c526326/jkad203-html.html
  17. Aug 2023
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the yellow mealworm genome
    1
    1. scibot 31 Aug 2023
      RRID:SCR_017016

      DOI: 10.12688/openreseurope.13987.3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10445852/
  19. Apr 2023
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
    1
    1. scibot 14 Apr 2023
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giad023

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    ncbi.nlm.nih.gov/pmc/articles/PMC10087013/
  21. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  22. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
    1. scibot 06 Apr 2023
      RRID:SCR_017016

      DOI: 10.1093/jhered/esad015

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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  23. Mar 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
    1
    1. scibot 22 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.78

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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nanopore-based enrichment of antimicrobial resistance genes – a case-based study
    1
    1. scibot 22 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.75

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027057/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SMARTdenovo: a de novo assembler using long noisy reads
    1
    1. scibot 02 Mar 2023
      RRID: SCR_017016

      DOI: 10.46471/gigabyte.15

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632051/
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements in the sequencing and assembly of plant genomes
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.24

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631998/
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.36

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.28

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly and annotation of the tambaqui (Colossoma macropomum): an emblematic fish of the Amazon River Basin
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017016

      DOI: 10.46471/gigabyte.29

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650303/
  31. Feb 2023
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
    1. scibot 23 Feb 2023
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giad005

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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An updated version of the Madagascar periwinkle genome
    1
    1. scibot 10 Feb 2023
      RRID:SCR_017016

      DOI: 10.12688/f1000research.129212.1

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    ncbi.nlm.nih.gov/pmc/articles/PMC9902796/
  34. Dec 2022
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  36. Jul 2022
  37. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
    1. scibot 30 Jul 2022
      RRID:SCR_017016

      DOI: 10.1093/gbe/evac106

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    academic.oup.com/gbe/article/14/7/evac106/6650251
  38. Jun 2022
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
    1
    1. scibot 09 Jun 2022
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giac039

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    ncbi.nlm.nih.gov/pmc/articles/PMC9155146/
  40. May 2022
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
    1
    1. scibot 05 May 2022
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giac034

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    ncbi.nlm.nih.gov/pmc/articles/PMC9049114/
  42. Mar 2022
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
    1
    1. scibot 04 Mar 2022
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giac010

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    ncbi.nlm.nih.gov/pmc/articles/PMC8848321/
  45. Jul 2021
  46. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
    1
    1. scibot 30 Jul 2021
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giz160

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      Curator: @ethanbadger

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    academic.oup.com/gigascience/article/9/1/giz160/5694103
  47. May 2021
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
    1
    1. scibot 27 May 2021
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giab035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  49. Mar 2021
  50. academic.oup.com academic.oup.com
    A chromosome‐level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
    1
    1. scibot 24 Mar 2021
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giab016

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    academic.oup.com/gigascience/article/10/3/giab016/6178709
  51. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
    1
    1. scibot 20 Mar 2021
      SCR_017016

      DOI: 10.1093/gigascience/giab017

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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  52. Feb 2021
  53. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
    1
    1. scibot 28 Feb 2021
      RRID:SCR_017016

      DOI: 10.1093/g3journal/jkaa071

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    academic.oup.com/g3journal/advance-article-abstract/doi/10.1093/g3journal/jkaa071/6080775
  54. Dec 2020
  55. academic.oup.com academic.oup.com
    Long-read assembly of the Brassica napus reference genome Darmor-bzh
    1
    1. scibot 19 Dec 2020
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giaa137

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    academic.oup.com/gigascience/article/9/12/giaa137/6034787
  56. Sep 2020
  57. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
    1
    1. scibot 26 Sep 2020
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giaa099

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    pubmed.ncbi.nlm.nih.gov/32947622/
  58. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
    1
    1. scibot 26 Sep 2020
      RRID:SCR_017016

      DOI: 10.1093/gigascience/giaa100

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    pubmed.ncbi.nlm.nih.gov/32964225/