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DeMBA: a developmental atlas for navigating the mouse brain in space and time

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1. scibot 06 Sep 2025
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41467-025-63177-9
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12397216/
Apr 2025
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Molecular elucidation of brain lipofuscin in aging and Neuronal Ceroid Lipofuscinosis

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1. scibot 19 Apr 2025
  
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  RRID:SCR_017183
  
  DOI: 10.21203/rs.3.rs-6010379/v1
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11957193/
www.biorxiv.org www.biorxiv.org

Differences in Cajal-Retzius cell density and postnatal persistence across cortical areas revealed by a novel intersectional genetic labeling approach

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1. scibot 13 Apr 2025
  
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  RRID:SCR_017183
  
  DOI: 10.1101/2025.04.09.647949
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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biorxiv.org/content/10.1101/2025.04.09.647949v1
Mar 2025
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Seed structure and phosphorylation in the fuzzy coat impact tau seeding competency

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1. scibot 14 Mar 2025
  
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  RRID:SCR_017183
  
  DOI: 10.1101/2025.03.07.642026
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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biorxiv.org/content/10.1101/2025.03.07.642026v1
Feb 2025
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Network analysis of α-synuclein pathology progression reveals p21-activated kinases as regulators of vulnerability

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1. scibot 07 Feb 2025
  
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  RRID:SCR_017183
  
  DOI: 10.1101/2024.10.22.619411
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @inessasarian
  
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biorxiv.org/content/10.1101/2024.10.22.619411v1
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization

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1. scibot 17 Nov 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41597-024-04060-y
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11557934/
Oct 2024
www.nature.com www.nature.com

Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

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1. scibot 02 Oct 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41597-024-03863-3
  
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nature.com/articles/s41597-024-03863-3
May 2024
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Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

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1. scibot 23 May 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s42003-024-06242-1
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11106287/
Mar 2024
www.nature.com www.nature.com

Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology

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1. scibot 28 Mar 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41467-024-47027-8
  
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nature.com/articles/s41467-024-47027-8
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A topographical atlas of α-synuclein dosage and cell type-specific expression in adult mouse brain and peripheral organs

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1. scibot 22 Mar 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41531-024-00672-8
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10951202/
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LRRK2 kinase inhibition reverses G2019S mutation-dependent effects on tau pathology progression

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1. scibot 06 Mar 2024
  
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  RRID:SCR_017183
  
  DOI: 10.1186/s40035-024-00403-2
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10910783/
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

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1. scibot 28 Feb 2024
  
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  RRID:SCR_017183
  
  DOI: 10.3389/fninf.2024.1284107
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10884250/
Oct 2023
www.nature.com www.nature.com

Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration

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1. scibot 06 Oct 2023
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41592-023-02034-3
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @scibot
  
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nature.com/articles/s41592-023-02034-3
Sep 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

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1. scibot 28 Sep 2023
  
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  RRID:SCR_01718355
  
  DOI: 10.1038/s41467-023-41645-4
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @evieth
  
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  RRIDCUR:Unresolved RRID:SCR_017183
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ncbi.nlm.nih.gov/pmc/articles/PMC10514056/
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The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain

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1. scibot 22 Sep 2023
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41597-023-02527-y
  
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nature.com/articles/s41597-023-02527-y
Mar 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia

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1. scibot 24 Mar 2023
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41597-023-02012-6
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10030855/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

1
1. scibot 22 Mar 2023
  
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  RRID:SCR_017183
  
  DOI: 10.1101/2023.02.27.530226
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10002670/
www.frontiersin.org www.frontiersin.org

A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting

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1. scibot 18 Mar 2023
  
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  RRID:SCR_017183
  
  DOI: 10.3389/fninf.2023.1154080
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @scibot
  
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frontiersin.org/articles/10.3389/fninf.2023.1154080/full
Apr 2022
www.nature.com www.nature.com

DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains

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1. scibot 23 Apr 2022
  
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  RRID:SCR_017183
  
  DOI: 10.1038/s41597-022-01268-8
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @scibot
  
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nature.com/articles/s41597-022-01268-8
Sep 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain

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1. scibot 03 Sep 2020
  
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  https://www.nitrc.org/projects/nutil/
  
  DOI: 10.3389/fninf.2019.00075
  
  Resource: Nutil - Neuroimaging utilities (RRID:SCR_017183)
  
  Curator: @bandrow
  
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  RRID:SCR_017183 RRIDCUR:Missing
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ncbi.nlm.nih.gov/pmc/articles/PMC6901597/