45 Matching Annotations
  1. Sep 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors
    1
    1. scibot 27 Sep 2024
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giae072

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    ncbi.nlm.nih.gov/pmc/articles/PMC11423352/
  3. Aug 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A trade-off in evolution: the adaptive landscape of spiders without venom glands
    1
    1. scibot 19 Aug 2024
      SCR_017225

      DOI: 10.1093/gigascience/giae048

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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  5. Apr 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
    1
    1. scibot 03 Apr 2024
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.115

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    ncbi.nlm.nih.gov/pmc/articles/PMC10973836/
  7. Mar 2024
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
    1. scibot 03 Mar 2024
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giae004

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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  9. Jan 2024
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
    1. scibot 20 Jan 2024
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  11. Nov 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
    1. scibot 30 Nov 2023
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giad100

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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  13. Jul 2023
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  15. Mar 2023
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.6

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.34

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SMARTdenovo: a de novo assembler using long noisy reads
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.15

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632051/
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.27

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  20. Jan 2023
  21. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
    1
    1. scibot 10 Jan 2023
      RRID:SCR_017225

      DOI: 10.1002/ps.7319

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    onlinelibrary.wiley.com/doi/10.1002/ps.7319
  22. Dec 2022
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  24. Sep 2022
  25. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
    1
    1. scibot 16 Sep 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac085

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  26. Aug 2022
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome
    1
    1. scibot 11 Aug 2022
      RRID:SCR_017225

      DOI: 10.1093/dnares/dsac028

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    ncbi.nlm.nih.gov/pmc/articles/PMC9358014/
  28. Jul 2022
  29. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
    1. scibot 27 Jul 2022
      SCR_017225

      DOI: 10.1093/jhered/esac033

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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  30. May 2022
  31. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
    1. scibot 10 May 2022
      RRID:SCR_017225

      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  32. Apr 2022
  33. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_017225

      DOI: 10.1016/j.celrep.2022.110638

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    sciencedirect.com/science/article/pii/S2211124722003904
  34. Mar 2022
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
    1
    1. scibot 03 Mar 2022
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giac011

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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  37. Jan 2022
  38. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation
    1
    1. scibot 22 Jan 2022
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13582

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13582
  39. Nov 2021
  40. academic.oup.com academic.oup.com
    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
    1
    1. scibot 23 Nov 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab075

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    academic.oup.com/gigascience/article/10/11/giab075/6431779
  41. www.nature.com www.nature.com
    A draft genome, resequencing, and metabolomes reveal the genetic background and molecular basis of the nutritional and medicinal properties of loquat (Eriobotrya japonica (Thunb.) Lindl)
    1
    1. scibot 06 Nov 2021
      RRID:SCR_017225

      DOI: 10.1038/s41438-021-00657-1

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    nature.com/articles/s41438-021-00657-1
  42. Oct 2021
  43. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
    1
    1. scibot 26 Oct 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab070

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    academic.oup.com/gigascience/article/10/10/giab070/6407244
  44. Aug 2021
  45. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles
    1
    1. scibot 01 Aug 2021
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13338

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13338
  46. academic.oup.com academic.oup.com
    Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab ( Portunus trituberculatus )
    1
    1. scibot 01 Aug 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz161

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    academic.oup.com/gigascience/article/9/1/giz161/5697200
  47. Jul 2021
  48. academic.oup.com academic.oup.com
    A chromosome-level draft genome of the grain aphid Sitobion miscanthi
    1
    1. scibot 29 Jul 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz101

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    academic.oup.com/gigascience/article/8/8/giz101/5552228
  49. May 2021
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
    1
    1. scibot 27 May 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  51. Apr 2021
  52. academic.oup.com academic.oup.com
    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
    1
    1. scibot 24 Apr 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab027

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    academic.oup.com/gigascience/article/10/4/giab027/6237163
  53. Mar 2021
  54. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
    1
    1. scibot 20 Mar 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giab017

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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  55. Feb 2021
  56. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
    1
    1. scibot 28 Feb 2021
      RRID:SCR_017225

      DOI: 10.1093/g3journal/jkaa071

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    academic.oup.com/g3journal/article-abstract/11/2/jkaa071/6080775
  57. Jan 2021
  58. academic.oup.com academic.oup.com
    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
    1
    1. scibot 14 Jan 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa148

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    academic.oup.com/gigascience/article/10/1/giaa148/6067174
  59. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
    1
    1. scibot 05 Jan 2021
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa146

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  60. Dec 2020
  61. academic.oup.com academic.oup.com
    Long-read assembly of the Brassica napus reference genome Darmor-bzh
    1
    1. scibot 19 Dec 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa137

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    academic.oup.com/gigascience/article/9/12/giaa137/6034787
  62. Sep 2020
  63. academic.oup.com academic.oup.com
    Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
    1
    1. scibot 23 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa006

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    academic.oup.com/gigascience/article/9/2/giaa006/5758190
  64. academic.oup.com academic.oup.com
    CSA: A high-throughput c hromosome- s cale a ssembly pipeline for vertebrate genomes
    1
    1. scibot 17 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa034

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    academic.oup.com/gigascience/article/9/5/giaa034/5843736
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa067

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    ncbi.nlm.nih.gov/pmc/articles/PMC7301629/
  66. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the female western mosquitofish ( Gambusia affinis )
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa092

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    academic.oup.com/gigascience/article/9/8/giaa092/5897807
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
    1
    1. scibot 16 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa088

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      RRID:SCR_017225 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC7433188/
  68. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
    1
    1. scibot 07 Sep 2020
      RRID:SCR_017225

      DOI: 10.1111/1755-0998.13190

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_017225

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      RRIDCUR:Validated RRID:SCR_017225
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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13190
  69. academic.oup.com academic.oup.com
    Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
    1
    1. scibot 06 Sep 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giaa013

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_017225

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      RRIDCUR:Validated RRID:SCR_017225
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    academic.oup.com/gigascience/article/9/3/giaa013/5771296
  70. Jan 2020
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz125

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @evieth

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      RRID:SCR_017225 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6889754/
  72. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz160

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/9/1/giz160/5694103
  73. academic.oup.com academic.oup.com
    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz085

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/8/7/giz085/5532406
  74. academic.oup.com academic.oup.com
    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017225

      DOI: 10.1093/gigascience/giz128

      Resource: WTDBG (RRID:SCR_017225)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_017225

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      RRID:SCR_017225 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/8/11/giz128/5612101