59 Matching Annotations
  1. Jun 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus
    1
    1. scibot 22 Jun 2024
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giae029

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    ncbi.nlm.nih.gov/pmc/articles/PMC11170218/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
    1
    1. scibot 08 Jun 2024
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giae025

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the rare and endangered Grantham’s camellia, Camellia granthamiana
    1
    1. scibot 02 Jun 2024
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.124

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    ncbi.nlm.nih.gov/pmc/articles/PMC11131091/
  5. May 2024
  6. www.sciencedirect.com www.sciencedirect.com
    Heterochromatic 3D genome organization is directed by HP1a- and H3K9-dependent and independent mechanisms
    1
    1. scibot 30 May 2024
      RRID:SCR_017226

      DOI: 10.1016/j.molcel.2024.05.002

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      RRID:SCR_017226 DOI:10.1016/j.molcel.2024.05.002
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    sciencedirect.com/science/article/pii/S1097276524003952
  7. www.biorxiv.org www.biorxiv.org
    Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples
    1
    1. scibot 23 May 2024
      RRID:SCR_017226

      DOI: 10.1101/2024.05.13.593769

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    biorxiv.org/content/10.1101/2024.05.13.593769v1
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
    1. scibot 08 May 2024
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.123

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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  9. Mar 2024
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
    1
    1. scibot 19 Mar 2024
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.112

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    ncbi.nlm.nih.gov/pmc/articles/PMC10940895/
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes)
    1
    1. scibot 16 Mar 2024
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giae006

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    ncbi.nlm.nih.gov/pmc/articles/PMC10938897/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
    1. scibot 03 Mar 2024
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giae004

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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  13. Jan 2024
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation
    1
    1. scibot 05 Jan 2024
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad107

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    ncbi.nlm.nih.gov/pmc/articles/PMC10764150/
  15. Dec 2023
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the Pacific geoduck Panopea generosa reveals major inter- and intrachromosomal rearrangements and substantial expansion of the copine gene family
    1
    1. scibot 21 Dec 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10729735/
  17. Nov 2023
  18. www.sciencedirect.com www.sciencedirect.com
    Active maintenance of CD8+ T cell naivety through regulation of global genome architecture
    1
    1. scibot 02 Nov 2023
      RRID:SCR_017226

      DOI: 10.1016/j.celrep.2023.113301

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    sciencedirect.com/science/article/pii/S221112472301313X
  19. Oct 2023
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
    1
    1. scibot 28 Oct 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad090

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    ncbi.nlm.nih.gov/pmc/articles/PMC10600911/
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
    1
    1. scibot 05 Oct 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad077

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    ncbi.nlm.nih.gov/pmc/articles/PMC10546077/
  22. Sep 2023
  23. www.sciencedirect.com www.sciencedirect.com
    The fate of sex chromosomes during the evolution of monoicy from dioicy in liverworts
    1
    1. scibot 27 Sep 2023
      RRID:SCR_017226

      DOI: 10.1016/j.cub.2023.07.023

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    sciencedirect.com/science/article/pii/S0960982223009302
  24. Jul 2023
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 22 Jul 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad018

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    ncbi.nlm.nih.gov/pmc/articles/PMC10353722/
  27. Apr 2023
  28. 52.53.155.43 52.53.155.43
    Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture
    1
    1. scibot 12 Apr 2023
      RRID:SCR_017226

      DOI: 10.1101/2023.02.26.530139

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    52.53.155.43/466ebedd8046ca94e96cd8cd2fcd3a0cdd9678e2/2023.02.26.530139v1.full-html.html
  29. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
    1. scibot 06 Apr 2023
      RRID:SCR_017226

      DOI: 10.1093/jhered/esad015

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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  30. Mar 2023
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
    1
    1. scibot 29 Mar 2023
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.76

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038202/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.69

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693968/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the humpback puffer, Tetraodon palembangensis
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.17

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632004/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly of the common vetch (Vicia sativa) reference genome
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.38

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
  35. Feb 2023
  36. www.biorxiv.org www.biorxiv.org
    The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 23 Feb 2023
      RRID:SCR_017226

      DOI: 10.1101/2023.01.26.525801

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    biorxiv.org/content/10.1101/2023.01.26.525801v1
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
    1. scibot 23 Feb 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad005

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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  38. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
    1. scibot 16 Feb 2023
      RRID:SCR_017226

      DOI: 10.1016/j.ygeno.2023.110582

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    sciencedirect.com/science/article/pii/S0888754323000265
  39. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
    1
    1. scibot 08 Feb 2023
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giad003

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  40. Jan 2023
  41. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
    1
    1. scibot 31 Jan 2023
      RRID:SCR_017226

      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  42. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
    1
    1. scibot 20 Jan 2023
      RRID:SCR_017226

      DOI: 10.1101/2023.01.10.523438

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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  43. Nov 2022
  44. www.sciencedirect.com www.sciencedirect.com
    Essential role of MESP1-RING1A complex in cardiac differentiation
    1
    1. scibot 22 Nov 2022
      RRID:SCR_017226

      DOI: 10.1016/j.devcel.2022.10.009

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    sciencedirect.com/science/article/pii/S1534580722007614
  45. academic.oup.com academic.oup.com
    The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv
    1
    1. scibot 17 Nov 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac109

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
  46. Oct 2022
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
    1. scibot 26 Oct 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac090

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    ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
  48. Sep 2022
  49. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
    1
    1. scibot 17 Sep 2022
      RRID:SCR_017226

      DOI: 10.1093/gbe/evac132

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    academic.oup.com/gbe/article/14/9/evac132/6677079
  50. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
    1
    1. scibot 16 Sep 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac085

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 promotes the myelination transcriptional program in oligodendrocytes
    1
    1. scibot 08 Sep 2022
      RRID:SCR_017226

      DOI: 10.7554/eLife.77848

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    ncbi.nlm.nih.gov/pmc/articles/PMC9439679/
  52. Jul 2022
  53. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
    1. scibot 30 Jul 2022
      RRID:SCR_017226

      DOI: 10.1093/gbe/evac106

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    academic.oup.com/gbe/article/14/7/evac106/6650251
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
    1
    1. scibot 27 Jul 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac062

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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
    1
    1. scibot 14 Jul 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac063

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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  56. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
    1
    1. scibot 06 Jul 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac059

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
  57. Jun 2022
  58. www.sciencedirect.com www.sciencedirect.com
    MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokines
    1
    1. scibot 22 Jun 2022
      SCR_017226

      DOI: 10.1016/j.celrep.2022.110988

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    sciencedirect.com/science/article/pii/S2211124722007744
  59. May 2022
  60. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
    1. scibot 10 May 2022
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
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    1. scibot 05 May 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac034

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    ncbi.nlm.nih.gov/pmc/articles/PMC9049114/
  62. Apr 2022
  63. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_017226

      DOI: 10.1016/j.celrep.2022.110638

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    sciencedirect.com/science/article/pii/S2211124722003904
  64. Mar 2022
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giac025

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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/
  67. Feb 2022
  68. www.sciencedirect.com www.sciencedirect.com
    HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization
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    1. scibot 23 Feb 2022
      RRID:SCR_017226

      DOI: 10.1016/j.molcel.2022.01.023

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    sciencedirect.com/science/article/pii/S1097276522000983
  69. www.sciencedirect.com www.sciencedirect.com
    Gene architecture directs splicing outcome in separate nuclear spatial regions
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    1. scibot 22 Feb 2022
      RRID:SCR_017226

      DOI: 10.1016/j.molcel.2022.02.001

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    sciencedirect.com/science/article/pii/S109727652200106X
  70. Nov 2021
  71. gigabytejournal.com gigabytejournal.com
    Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
    1
    1. scibot 21 Nov 2021
      RRID:SCR_017226

      DOI: 10.46471/gigabyte.32

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    gigabytejournal.com/articles/32
  72. Mar 2021
  73. academic.oup.com academic.oup.com
    A chromosome‐level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
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    1. scibot 24 Mar 2021
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giab016

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    academic.oup.com/gigascience/article/10/3/giab016/6178709
  74. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
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    1. scibot 20 Mar 2021
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giab017

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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  75. Feb 2021
  76. academic.oup.com academic.oup.com
    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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    1. scibot 24 Feb 2021
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giz158

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    academic.oup.com/gigascience/article/9/1/giz158/5695848
  77. Jan 2021
  78. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense
    1
    1. scibot 26 Jan 2021
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giaa160

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    academic.oup.com/gigascience/article/10/1/giaa160/6103632
  79. Sep 2020
  80. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
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    1. scibot 26 Sep 2020
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giaa100

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    pubmed.ncbi.nlm.nih.gov/32964225/
  81. academic.oup.com academic.oup.com
    De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
    1
    1. scibot 23 Sep 2020
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giaa009

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    academic.oup.com/gigascience/article/9/2/giaa009/5734639
  82. academic.oup.com academic.oup.com
    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
    1
    1. scibot 13 Sep 2020
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giaa027

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    academic.oup.com/gigascience/article/9/4/giaa027/5813919
  83. www.sciencedirect.com www.sciencedirect.com
    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
    1
    1. scibot 08 Sep 2020
      RRID:SCR_017226

      DOI: 10.1016/j.immuni.2020.01.003

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    sciencedirect.com/science/article/pii/S1074761320300303
  84. Jan 2020
  85. www.sciencedirect.com www.sciencedirect.com
    RNA Interactions Are Essential for CTCF-Mediated Genome Organization
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017226

      DOI: 10.1016/j.molcel.2019.08.015

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    sciencedirect.com/science/article/pii/S1097276519306549
  86. academic.oup.com academic.oup.com
    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giz085

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    academic.oup.com/gigascience/article/8/7/giz085/5532406
  87. academic.oup.com academic.oup.com
    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_017226

      DOI: 10.1093/gigascience/giz128

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    academic.oup.com/gigascience/article/8/11/giz128/5612101