90 Matching Annotations
  1. Aug 2025
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A near telomere-to-telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12360841/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12360840/
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A chromosome-level genome assembly of Electrophorus voltai, a species of electric eel
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12328650/
  5. Jul 2025
  6. academic.oup.com academic.oup.com
    Telomere-to-telomere chromosome-scale genome assemblies of black and golden koi carp variants support construction of an ancient karyotype of Cypriniformes
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giaf073/8213833
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere gap-free reference genome and taxonomic reassessment of Siniperca roulei
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12263216/
  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A telomere-to-telomere gapless genome reveals SlPRR1 control of circadian rhythm and photoperiodic flowering in tomato
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12218202/
  9. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12218201/
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere gapless genome of grass carp provides insights for genetic improvement
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12204074/
  11. Jun 2025
  12. 52.53.155.43 52.53.155.43
    Chromosome-Level genome assembly and transcriptome analysis of the ural owl, Strix uralensis Pallas, 1771
    2
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    52.53.155.43/7dabfbbd9bff9fd118ed366d51d2c9d870afbb9e/PDF-html.html
  13. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12122422/
  14. May 2025
  15. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assemblies of five Sinocyclocheilus species
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12089701/
  16. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-scale assemblies of three Ormosia species: repetitive sequences distribution and structural rearrangement
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12083454/
  17. dx.doi.org dx.doi.org
    Telomere-to-telomere genome of common bean (Phaseolus vulgaris L., YP4)
    1
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    dx.doi.org/10.1093/gigascience/giaf001
  18. Apr 2025
  19. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Telomere-to-telomere genome assembly of Electrophorus electricus provides insights into the evolution of electric eels
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11959694/
  20. 52.53.155.43 52.53.155.43
    PDF-html.html
    1
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    52.53.155.43/55258fb7cbb5129b8f6a80aa9ec7947c8b76a265/PDF-html.html
  21. Mar 2025
  22. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Hi-GDT: A Hi-C-based 3D gene domain analysis tool for analyzing local chromatin contacts in plants
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11927400/
  23. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Multiomics analysis provides insights into musk secretion in muskrat and musk deer
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11878540/
  24. Feb 2025
  25. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11843098/
  26. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Enhancing inbreeding estimation and global conservation insights through chromosome-level assemblies of the Chinese and Malayan pangolin
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11825179/
  27. Jan 2025
  28. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Polyploid genome assembly of Cardamine chenopodiifolia
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11693932/
  29. Dec 2024
  30. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11590113/
  31. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11633456/
  32. Nov 2024
  33. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11489038/
  34. Sep 2024
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11423352/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Telomere-to-telomere gap-free genome assembly of the endangered Yangtze finless porpoise and East Asian finless porpoise
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11403816/
  37. Aug 2024
  38. www.sciencedirect.com www.sciencedirect.com
    Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries
    1
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    sciencedirect.com/science/article/pii/S1097276524006610
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A trade-off in evolution: the adaptive landscape of spiders without venom glands
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  40. Jul 2024
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11273517/
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exploring the cobia (Rachycentron canadum) genome: unveiling putative male heterogametic regions and identification of sex-specific markers
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11240236/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11238431/
  44. Jun 2024
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11170218/
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the rare and endangered Grantham’s camellia, Camellia granthamiana
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11131091/
  48. May 2024
  49. www.sciencedirect.com www.sciencedirect.com
    Heterochromatic 3D genome organization is directed by HP1a- and H3K9-dependent and independent mechanisms
    1
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    sciencedirect.com/science/article/pii/S1097276524003952
  50. www.biorxiv.org www.biorxiv.org
    Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples
    1
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    biorxiv.org/content/10.1101/2024.05.13.593769v1
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  52. Mar 2024
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10940895/
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10938897/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  56. Jan 2024
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10764150/
  58. Dec 2023
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the Pacific geoduck Panopea generosa reveals major inter- and intrachromosomal rearrangements and substantial expansion of the copine gene family
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10729735/
  60. Nov 2023
  61. www.sciencedirect.com www.sciencedirect.com
    Active maintenance of CD8+ T cell naivety through regulation of global genome architecture
    1
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    sciencedirect.com/science/article/pii/S221112472301313X
  62. Oct 2023
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10600911/
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10546077/
  65. Sep 2023
  66. www.sciencedirect.com www.sciencedirect.com
    The fate of sex chromosomes during the evolution of monoicy from dioicy in liverworts
    1
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    sciencedirect.com/science/article/pii/S0960982223009302
  67. Jul 2023
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10353722/
  70. Apr 2023
  71. 52.53.155.43 52.53.155.43
    Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture
    1
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    52.53.155.43/466ebedd8046ca94e96cd8cd2fcd3a0cdd9678e2/2023.02.26.530139v1.full-html.html
  72. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  73. Mar 2023
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10038202/
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693968/
  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the humpback puffer, Tetraodon palembangensis
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9632004/
  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly of the common vetch (Vicia sativa) reference genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
  78. Feb 2023
  79. www.biorxiv.org www.biorxiv.org
    The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
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    biorxiv.org/content/10.1101/2023.01.26.525801v1
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  81. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
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    sciencedirect.com/science/article/pii/S0888754323000265
  82. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad003/7025323
  83. Jan 2023
  84. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
    1
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    nature.com/articles/s41598-022-25078-5
  85. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
    1
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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  86. Nov 2022
  87. www.sciencedirect.com www.sciencedirect.com
    Essential role of MESP1-RING1A complex in cardiac differentiation
    1
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    sciencedirect.com/science/article/pii/S1534580722007614
  88. academic.oup.com academic.oup.com
    The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
  89. Oct 2022
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
  91. Sep 2022
  92. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
    1
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    academic.oup.com/gbe/article/14/9/evac132/6677079
  93. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 promotes the myelination transcriptional program in oligodendrocytes
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9439679/
  95. Jul 2022
  96. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
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    academic.oup.com/gbe/article/14/7/evac106/6650251
  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  99. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
  100. Jun 2022
  101. www.sciencedirect.com www.sciencedirect.com
    MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokines
    1
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    sciencedirect.com/science/article/pii/S2211124722007744
  102. May 2022
  103. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
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    gigabytejournal.com/articles/51
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9049114/
  105. Apr 2022
  106. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
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    sciencedirect.com/science/article/pii/S2211124722003904
  107. Mar 2022
  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/
  110. Feb 2022
  111. www.sciencedirect.com www.sciencedirect.com
    HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization
    1
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    sciencedirect.com/science/article/pii/S1097276522000983
  112. www.sciencedirect.com www.sciencedirect.com
    Gene architecture directs splicing outcome in separate nuclear spatial regions
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    sciencedirect.com/science/article/pii/S109727652200106X
  113. Nov 2021
  114. gigabytejournal.com gigabytejournal.com
    Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
    1
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    gigabytejournal.com/articles/32
  115. Mar 2021
  116. academic.oup.com academic.oup.com
    A chromosome‐level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
    1
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    academic.oup.com/gigascience/article/10/3/giab016/6178709
  117. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
    1
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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  118. Feb 2021
  119. academic.oup.com academic.oup.com
    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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    academic.oup.com/gigascience/article/9/1/giz158/5695848
  120. Jan 2021
  121. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense
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    academic.oup.com/gigascience/article/10/1/giaa160/6103632
  122. Sep 2020
  123. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
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    pubmed.ncbi.nlm.nih.gov/32964225/
  124. academic.oup.com academic.oup.com
    De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
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    academic.oup.com/gigascience/article/9/2/giaa009/5734639
  125. academic.oup.com academic.oup.com
    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
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    academic.oup.com/gigascience/article/9/4/giaa027/5813919
  126. www.sciencedirect.com www.sciencedirect.com
    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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    sciencedirect.com/science/article/pii/S1074761320300303
  127. Jan 2020
  128. www.sciencedirect.com www.sciencedirect.com
    RNA Interactions Are Essential for CTCF-Mediated Genome Organization
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    sciencedirect.com/science/article/pii/S1097276519306549
  129. academic.oup.com academic.oup.com
    De novo genome assembly of the endangered Acer yangbiense , a plant species with extremely small populations endemic to Yunnan Province, China
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    academic.oup.com/gigascience/article/8/7/giz085/5532406
  130. academic.oup.com academic.oup.com
    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
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    academic.oup.com/gigascience/article/8/11/giz128/5612101