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Oct 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Cross-modal contrastive learning decodes developmental regulatory features through chromatin potential analysis

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1. scibot 21 Oct 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12532322/
54.241.53.176 54.241.53.176

2025.09.26.678859v1.full-html.html

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54.241.53.176/6799670a7f30b57e9f6325ef120ecd132ee74343/2025.09.26.678859v1.full-html.html
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Pan-cancer Analyses Refine the Single-Cell Portrait of Tumor-Infiltrating Dendritic Cells

1
1. scibot 03 Oct 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12485386/
Sep 2025
elifesciences.org elifesciences.org

Multi-omics single-cell analysis reveals key regulators of HIV-1 persistence and aberrant host immune responses in early infection

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1. scibot 04 Sep 2025
  
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  DOI: 10.7554/eLife.104856
  
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elifesciences.org/articles/104856
Aug 2025
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Gut commensal microbiota drive tailored macrophage responses

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1. scibot 19 Aug 2025
  
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  DOI: 10.1016/j.celrep.2025.116157
  
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sciencedirect.com/science/article/pii/S2211124725009283
Jul 2025
52.53.155.43 52.53.155.43

1-s2.0-S2589004225014774-main-html.html

1
1. scibot 30 Jul 2025
  
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52.53.155.43/eb3879356815edf4559ddccc1c8f19d1c41f73e2/1-s2.0-S2589004225014774-main-html.html
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

SeuratExtend: streamlining single-cell RNA-seq analysis through an integrated and intuitive framework

1
1. scibot 10 Jul 2025
  
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  DOI: 10.1093/gigascience/giaf076
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12236070/
May 2025
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Single-cell transcriptomic profiling reveals diversity in human iNKT cells across hematologic tissues

1
1. scibot 16 May 2025
  
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sciencedirect.com/science/article/pii/S2211124725003584
Mar 2025
52.53.155.43 52.53.155.43

PDF-html.html

1
1. scibot 26 Mar 2025
  
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52.53.155.43/dee9a06bd4d5f7e409990fffe7937b86e5d2a784/PDF-html.html
Dec 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Single-Cell Analysis of Bone Marrow CD8+ T Cells in Myeloid Neoplasms Reveals Pathways Associated with Disease Progression and Response to Treatment with Azacitidine

1
1. scibot 11 Dec 2024
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11616010/
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Cycling alpha cells in regenerative drug-treated human pancreatic islets may serve as key beta cell progenitors

1
1. scibot 05 Dec 2024
  
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  DOI: 10.1016/j.xcrm.2024.101832
  
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cell.com/cell-reports-medicine/abstract/S2666-3791(24)00603-7
Nov 2024
52.53.155.43 52.53.155.43

crc-24-0310-html.html

1
1. scibot 07 Nov 2024
  
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52.53.155.43/449361f05b483e756cda1d8fd2c4f1dacb3af208/crc-24-0310-html.html
Jul 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

ALDH1A3-acetaldehyde metabolism potentiates transcriptional heterogeneity in melanoma

1
1. scibot 18 Jul 2024
  
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  DOI: 10.1016/j.celrep.2024.114406
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11290356/
Apr 2024
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Identification of hypoxic macrophages in glioblastoma with therapeutic potential for vasculature normalization

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1. scibot 20 Apr 2024
  
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  DOI: 10.1016/j.ccell.2024.03.013
  
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sciencedirect.com/science/article/pii/S1535610824001193
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Single-cell transcriptomics reveals pre-existing COVID-19 vulnerability factors in lung cancer patients

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1. scibot 19 Apr 2024
  
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  DOI: 10.1158/1541-7786.MCR-23-0692
  
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aacrjournals.org/mcr/article/22/3/240/734706/Single-Cell-Transcriptomics-Reveals-Pre-existing
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3D reconstruction of the mouse cochlea from scRNA-seq data suggests morphogen-based principles in apex-to-base specification

1
1. scibot 09 Apr 2024
  
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  DOI: 10.1016/j.devcel.2024.03.028
  
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sciencedirect.com/science/article/pii/S1534580724001965
Jan 2024
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Establishing a 3D culture system for early organogenesis of monkey embryos ex vivo and single-cell transcriptome analysis of cultured embryos

1
1. scibot 20 Jan 2024
  
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  DOI: 10.1016/j.xpro.2023.102835
  
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sciencedirect.com/science/article/pii/S266616672300802X
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An exhausted-like microglial population accumulates in aged and APOE4 genotype Alzheimer’s brains

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1. scibot 06 Jan 2024
  
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  DOI: 10.1016/j.immuni.2023.12.001
  
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sciencedirect.com/science/article/pii/S1074761323005320
Nov 2023
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Bcl6 is a subset-defining transcription factor of lymphoid tissue inducer-like ILC3

1
1. scibot 28 Nov 2023
  
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  DOI: 10.1016/j.celrep.2023.113425
  
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sciencedirect.com/science/article/pii/S2211124723014377
Oct 2023
www.cell.com www.cell.com

Single-cell transcriptome profiling reveals immune and stromal cell heterogeneity in primary Sjögren’s syndrome

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1. scibot 06 Oct 2023
  
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  DOI: 10.1016/j.isci.2023.107943
  
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cell.com/iscience/abstract/S2589-0042(23)02020-5
Sep 2023
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Single-cell profiling of murine bladder cancer identifies sex-specific transcriptional signatures with prognostic relevance

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1. scibot 07 Sep 2023
  
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  DOI: 10.1016/j.isci.2023.107703
  
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sciencedirect.com/science/article/pii/S2589004223017807
Aug 2023
dx.doi.org dx.doi.org

Integrative single-cell and bulk transcriptomes analyses identify intrinsic HNSCC subtypes with distinct prognoses and therapeutic vulnerabilities

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1. scibot 04 Aug 2023
  
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  DOI: 10.1158/1078-0432.CCR-22-3563
  
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  DOI: 10.1158/1078-0432.CCR-22-3563
  
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dx.doi.org/10.1158/1078-0432.CCR-22-3563
Jul 2023
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Temporal transcriptome features identify early skeletal commitment during human epiphysis development at single-cell resolution

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1. scibot 29 Jul 2023
  
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  DOI: 10.1016/j.isci.2023.107200
  
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sciencedirect.com/science/article/pii/S2589004223012774
Jun 2023
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Transcriptomic landscape of early hair follicle and epidermal development

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1. scibot 23 Jun 2023
  
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  DOI: 10.1016/j.celrep.2023.112643
  
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sciencedirect.com/science/article/pii/S221112472300654X
Feb 2023
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Single-cell RNA-seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells

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1. scibot 04 Feb 2023
  
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  DOI: 10.1016/j.isci.2023.106019
  
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sciencedirect.com/science/article/pii/S2589004223000962
Jan 2023
52.53.155.43 52.53.155.43

SSRN-id4240416-html.html

2
1. scibot 14 Jan 2023
  
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  DOI: 10.1016/j.cell.2018.05.061
  
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2. scibot 14 Jan 2023
  
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  DOI: 10.2139/ssrn.4240416
  
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52.53.155.43/e5445d9fce8eef91f80e24393bf188b032c1c284/SSRN-id4240416 (1)-html.html
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Intratumoral Heterogeneity and Immune Modulation in Lung Adenocarcinoma in Female Smokers and Never Smokers

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1. scibot 12 Jan 2023
  
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  DOI: 10.1158/0008-5472.CAN-21-3836
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9437562/
Dec 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

TGF-β signaling and Creb5 cooperatively regulate Fgf18 to control pharyngeal muscle development

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1. scibot 31 Dec 2022
  
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  DOI: 10.7554/eLife.80405
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9771365/
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Dental niche cells directly contribute to tooth reconstitution and morphogenesis

1
1. scibot 08 Dec 2022
  
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  DOI: 10.1016/j.celrep.2022.111737
  
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sciencedirect.com/science/article/pii/S2211124722016151
aacrjournals.org aacrjournals.org

BAF complex maintains glioma stem cells in pediatric H3K27M-glioma

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1. scibot 03 Dec 2022
  
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  DOI: 10.1158/2159-8290.CD-21-1491
  
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aacrjournals.org/cancerdiscovery/article/12/12/2880/711164/BAF-Complex-Maintains-Glioma-Stem-Cells-in
Oct 2022
link.springer.com link.springer.com

Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

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1. scibot 11 Oct 2022
  
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  DOI: 10.1186/s12967-022-03661-8
  
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link.springer.com/article/10.1186/s12967-022-03661-8
Aug 2022
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Single-cell and spatial mapping Identify cell types and signaling Networks in the human ureter

1
1. scibot 02 Aug 2022
  
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  DOI: 10.1016/j.devcel.2022.07.004
  
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sciencedirect.com/science/article/pii/S1534580722004932
Mar 2022
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Human and mouse trigeminal ganglia cell atlas implicates multiple cell types in migraine

1
1. scibot 31 Mar 2022
  
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  DOI: 10.1016/j.neuron.2022.03.003
  
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sciencedirect.com/science/article/pii/S0896627322002288
Dec 2021
elifesciences.org elifesciences.org

Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development

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1. scibot 21 Dec 2021
  
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  RRID:SCR_017247
  
  DOI: 10.7554/eLife.70246
  
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elifesciences.org/articles/70246
Aug 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Molecular characterization of projection neuron subtypes in the mouse olfactory bulb

1
1. scibot 17 Aug 2021
  
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  RRID:SCR_017247
  
  DOI: 10.7554/eLife.65445
  
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  RRID:SCR_017247
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ncbi.nlm.nih.gov/pmc/articles/PMC8352594/
Jun 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart

1
1. scibot 26 Jun 2021
  
  in Public
  
  RRID:SCR_017247
  
  DOI: 10.7554/eLife.65921
  
  Resource: SCENIC (RRID:SCR_017247)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8216715/
Apr 2021
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Cascade diversification directs generation of neuronal diversity in the hypothalamus

1
1. scibot 22 Apr 2021
  
  in Public
  
  RRID:SCR_017247
  
  DOI: 10.1016/j.stem.2021.03.020
  
  Resource: SCENIC (RRID:SCR_017247)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_017247
  
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  RRIDCUR:Validated RRID:SCR_017247
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sciencedirect.com/science/article/pii/S1934590921001533
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Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube

1
1. scibot 15 Apr 2021
  
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  RRID:SCR_017247
  
  DOI: 10.1016/j.celrep.2021.108978
  
  Resource: SCENIC (RRID:SCR_017247)
  
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  RRID:SCR_017247 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124721002928
Nov 2020
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov

Prediction of single-cell gene expression for transcription factor analysis

1
1. scibot 03 Nov 2020
  
  in Public
  
  RRID:SCR_017247
  
  DOI: 10.1093/gigascience/giaa113
  
  Resource: SCENIC (RRID:SCR_017247)
  
  Curator: @Naa003
  
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  RRIDCUR:Validated RRID:SCR_017247
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pubmed.ncbi.nlm.nih.gov/33124660/
Sep 2020
www.embopress.org www.embopress.org

Temporal specificity and heterogeneity of Drosophila immune cells

1
1. scibot 16 Sep 2020
  
  in Public
  
  RRID:SCR_017247
  
  DOI: 10.15252/embj.2020104486
  
  Resource: SCENIC (RRID:SCR_017247)
  
  Curator: @Naa003
  
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  RRID:SCR_017247 RRIDCUR:Validated
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embopress.org/doi/abs/10.15252/embj.2020104486
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Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

1
1. scibot 08 Sep 2020
  
  in Public
  
  RRID:SCR_017247
  
  DOI: 10.1016/j.cell.2020.05.039
  
  Resource: SCENIC (RRID:SCR_017247)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_017247
  
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  RRID:SCR_017247 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S0092867420306723