36 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Snakemake workflows for long-read bacterial genome assembly and evaluation
    1
    1. scibot 10 Apr 2024
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.116

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    ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
  3. Sep 2023
  4. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
    1
    1. scibot 27 Sep 2023
      RRID:SCR_017642

      DOI: 10.1016/j.ijbiomac.2023.125908

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    sciencedirect.com/science/article/pii/S0141813023028039
  5. Aug 2023
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the yellow mealworm genome
    1
    1. scibot 31 Aug 2023
      RRID:SCR_017642

      DOI: 10.12688/openreseurope.13987.3

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10445852/
  7. Jul 2023
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 22 Jul 2023
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giad018

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    ncbi.nlm.nih.gov/pmc/articles/PMC10353722/
  9. Apr 2023
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
    1
    1. scibot 14 Apr 2023
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giad023

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    ncbi.nlm.nih.gov/pmc/articles/PMC10087013/
  11. Mar 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
    1
    1. scibot 29 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.44

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nanopore-based enrichment of antimicrobial resistance genes – a case-based study
    1
    1. scibot 22 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.75

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027057/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.71

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.6

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.34

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
    1
    1. scibot 02 Mar 2023
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.36

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  18. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
    1. scibot 02 Mar 2023
      SCR_017642

      DOI: 10.1093/jhered/esad003

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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  19. Feb 2023
  20. www.biorxiv.org www.biorxiv.org
    The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
    1
    1. scibot 23 Feb 2023
      RRID:SCR_017642

      DOI: 10.1101/2023.01.26.525801

      Resource: Racon (RRID:SCR_017642)

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    biorxiv.org/content/10.1101/2023.01.26.525801v1
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
    1
    1. scibot 23 Feb 2023
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giad005

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  22. Dec 2022
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
    1
    1. scibot 30 Dec 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac112

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9795480/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
    1. scibot 16 Dec 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac120

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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  25. Jul 2022
  26. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
    1. scibot 27 Jul 2022
      RRID:SCR_017642

      DOI: 10.1093/jhered/esac033

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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  27. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
    1
    1. scibot 06 Jul 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac059

      Resource: Racon (RRID:SCR_017642)

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
  28. Jun 2022
  29. academic.oup.com academic.oup.com
    A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree
    1
    1. scibot 17 Jun 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac042

      Resource: Racon (RRID:SCR_017642)

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac042/6608506
  30. May 2022
  31. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
    1. scibot 10 May 2022
      RRID:SCR_017642

      DOI: 10.46471/gigabyte.51

      Resource: Racon (RRID:SCR_017642)

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    gigabytejournal.com/articles/51
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
    1
    1. scibot 04 May 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac027

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9055855/
  33. Apr 2022
  34. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_017642

      DOI: 10.1016/j.celrep.2022.110638

      Resource: Racon (RRID:SCR_017642)

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    sciencedirect.com/science/article/pii/S2211124722003904
  35. Mar 2022
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
    1. scibot 31 Mar 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giac022

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  37. Jan 2022
  38. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
    1
    1. scibot 15 Jan 2022
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giab089

      Resource: Racon (RRID:SCR_017642)

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  39. Oct 2021
  40. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of Channa argus and Channa maculata and comparative analysis of their temperature adaptability
    1
    1. scibot 26 Oct 2021
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giab070

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    academic.oup.com/gigascience/article/10/10/giab070/6407244
  41. May 2021
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
    1
    1. scibot 27 May 2021
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giab035

      Resource: Racon (RRID:SCR_017642)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  43. Apr 2021
  44. academic.oup.com academic.oup.com
    A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch
    1
    1. scibot 24 Apr 2021
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giab027

      Resource: Racon (RRID:SCR_017642)

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    academic.oup.com/gigascience/article/10/4/giab027/6237163
  45. Mar 2021
  46. academic.oup.com academic.oup.com
    Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)
    1
    1. scibot 18 Mar 2021
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giab013

      Resource: Racon (RRID:SCR_017642)

      Curator: @evieth

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      RRIDCUR:Validated RRID:SCR_017642
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    academic.oup.com/gigascience/article/10/3/giab013/6168810
  47. Jan 2021
  48. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
    1
    1. scibot 05 Jan 2021
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa146

      Resource: Racon (RRID:SCR_017642)

      Curator: @evieth

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  49. Dec 2020
  50. academic.oup.com academic.oup.com
    Long-read assembly of the Brassica napus reference genome Darmor-bzh
    1
    1. scibot 19 Dec 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa137

      Resource: Racon (RRID:SCR_017642)

      Curator: @evieth

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    academic.oup.com/gigascience/article/9/12/giaa137/6034787
  51. academic.oup.com academic.oup.com
    Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
    1
    1. scibot 19 Dec 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa123

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      Curator: @evieth

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    academic.oup.com/gigascience/article/9/12/giaa123/6034784
  52. Sep 2020
  53. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
    1
    1. scibot 26 Sep 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa100

      Resource: Racon (RRID:SCR_017642)

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    pubmed.ncbi.nlm.nih.gov/32964225/
  54. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
    1
    1. scibot 25 Sep 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa099

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    pubmed.ncbi.nlm.nih.gov/32947622/
  55. academic.oup.com academic.oup.com
    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
    1
    1. scibot 13 Sep 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa094

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    academic.oup.com/gigascience/article/9/9/giaa094/5902284
  56. academic.oup.com academic.oup.com
    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
    1
    1. scibot 12 Sep 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa027

      Resource: Racon (RRID:SCR_017642)

      Curator: @ethanbadger

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    academic.oup.com/gigascience/article/9/4/giaa027/5813919
  57. academic.oup.com academic.oup.com
    Chromosome-level genome assembly and annotation of the loquat ( Eriobotrya japonica ) genome
    1
    1. scibot 04 Sep 2020
      RRID:SCR_017642

      DOI: 10.1093/gigascience/giaa015

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    academic.oup.com/gigascience/article/9/3/giaa015/5788433