28 Matching Annotations
  1. Nov 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A comprehensive in silico analysis and experimental validation of miRNAs capable of discriminating between lung adenocarcinoma and squamous cell carcinoma
    1
    1. scibot 07 Nov 2024
      RRID:SCR_017683

      DOI: 10.3389/fgene.2024.1419099

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11460580/
  3. Jul 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Timing of whole genome duplication is associated with tumor-specific MHC-II depletion in serous ovarian cancer
    1
    1. scibot 23 Jul 2024
      RRID:SCR_017683

      DOI: 10.1038/s41467-024-50137-y

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11258338/
  5. Jun 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Early detection and diagnosis of cancer with interpretable machine learning to uncover cancer-specific DNA methylation patterns
    2
    1. scibot 22 Jun 2024
      RRID:SCR_017683

      DOI: 10.1093/biomethods/bpae028

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    2. scibot 22 Jun 2024
      RRID:SCR_017683

      DOI: 10.1093/biomethods/bpae028

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC11186673/
  7. Mar 2024
  8. www.sciencedirect.com www.sciencedirect.com
    HIF-1α Mediates Immunosuppression and Chemoresistance in Colorectal Cancer by Inhibiting CXCL9, −10 and −11
    2
    1. scibot 15 Mar 2024
      RRID:SCR_017683

      DOI: 10.1016/j.biopha.2024.116427

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    2. scibot 15 Mar 2024
      RRID:SCR_017683

      DOI: 10.1016/j.biopha.2024.116427

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    sciencedirect.com/science/article/pii/S0753332224003111
  9. Dec 2023
  10. www.mdpi.com www.mdpi.com
    High Expression of THY1 in Intestinal Gastric Cancer as a Key Factor in Tumor Biology: A Poor Prognosis-Independent Marker Related to the Epithelial–Mesenchymal Transition Profile
    1
    1. scibot 29 Dec 2023
      RRID:SCR_017683

      DOI: 10.3390/genes15010028

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    mdpi.com/2073-4425/15/1/28
  11. Nov 2023
  12. www.mdpi.com www.mdpi.com
    Integrated Network Analysis of microRNAs, mRNAs, and Proteins Reveals the Regulatory Interaction between hsa-mir-200b and CFL2 Associated with Advanced Stage and Poor Prognosis in Patients with Intestinal Gastric Cancer
    1
    1. scibot 17 Nov 2023
      RRID:SCR_017683

      DOI: 10.3390/cancers15225374

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    mdpi.com/2072-6694/15/22/5374
  13. Oct 2023
  14. 52.53.155.43 52.53.155.43
    CDK19 and CDK8 Mediator kinases drive androgen-independent in vivo growth of castration-resistant prostate cancer
    1
    1. scibot 14 Oct 2023
      RRID:SCR_017683

      DOI: 10.1101/2023.08.08.552491

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    52.53.155.43/9964c17a6d8fec4a6a270a6588b0b357cf73bf12/2023.08.08.552491v1.full-html.html
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    InterOpt: Improved gene expression quantification in qPCR experiments using weighted aggregation of reference genes
    1
    1. scibot 14 Oct 2023
      RRID:SCR_017683

      DOI: 10.1016/j.isci.2023.107945

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10565776/
  16. Aug 2023
  17. dx.doi.org dx.doi.org
    Integrative single-cell and bulk transcriptomes analyses identify intrinsic HNSCC subtypes with distinct prognoses and therapeutic vulnerabilities
    2
    1. scibot 04 Aug 2023
      RRID:SCR_017683

      DOI: 10.1158/1078-0432.CCR-22-3563

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    2. scibot 04 Aug 2023
      RRID:SCR_017683

      DOI: 10.1158/1078-0432.CCR-22-3563

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    dx.doi.org/10.1158/1078-0432.CCR-22-3563
  18. Jul 2023
  19. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Lymph node medulla regulates the spatiotemporal unfolding of resident dendritic cell networks
    1
    1. scibot 21 Jul 2023
      RRID:SCR_017683

      DOI: 10.1016/j.immuni.2023.06.020

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    pmc.ncbi.nlm.nih.gov/articles/PMC10433941/
  20. May 2023
  21. www.nature.com www.nature.com
    Targeting metabolism by B-raf inhibitors and diclofenac restrains the viability of BRAF-mutated thyroid carcinomas with Hif-1α-mediated glycolytic phenotype
    1
    1. scibot 18 May 2023
      RRID:SCR_017683

      DOI: 10.1038/s41416-023-02282-2

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    nature.com/articles/s41416-023-02282-2
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Synthetic miR-21 decoy circularized by tRNA splicing mechanism inhibited tumorigenesis in glioblastoma in vitro and in vivo models
    1
    1. scibot 16 May 2023
      RRID:SCR_017683

      DOI: 10.1016/j.omtn.2023.04.001

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC10173299/
  23. Apr 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation landscapes of prostate cancer brain metastasis are shaped by early driver genetic alterations
    1
    1. scibot 21 Apr 2023
      RRID:SCR_017683

      DOI: 10.1158/0008-5472.CAN-22-2236

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC10102845/
  25. Dec 2022
  26. link.springer.com link.springer.com
    Towards resolution of the intron retention paradox in breast cancer
    1
    1. scibot 30 Dec 2022
      RRID:SCR_017683

      DOI: 10.1186/s13058-022-01593-1

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    link.springer.com/article/10.1186/s13058-022-01593-1
  27. Nov 2022
  28. www.sciencedirect.com www.sciencedirect.com
    Dissecting the genetic and microenvironmental factors of gastric tumorigenesis in mice
    1
    1. scibot 05 Nov 2022
      RRID:SCR_017683

      DOI: 10.1016/j.celrep.2022.111482

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    sciencedirect.com/science/article/pii/S2211124722013328
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
    1
    1. scibot 02 Nov 2022
      RRID:SCR_017683

      DOI: 10.1158/0008-5472.CAN-22-0671

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
  30. Jun 2022
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the discovery, prediction, and exploration of mutational signatures
    2
    1. scibot 07 Jun 2022
      RRID:SCR_017683

      DOI: 10.1158/0008-5472.CAN-21-0899

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @bandrow

      SciCrunch record: RRID:SCR_017683

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    2. scibot 07 Jun 2022
      RRID:SCR_017683

      DOI: 10.1158/0008-5472.CAN-21-0899

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

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    ncbi.nlm.nih.gov/pmc/articles/PMC8639789/
  32. Apr 2022
  33. www.sciencedirect.com www.sciencedirect.com
    Type 1 conventional dendritic cells maintain and guide the differentiation of precursors of exhausted T cells in distinct cellular niches
    1
    1. scibot 07 Apr 2022
      RRID:SCR_017683

      DOI: 10.1016/j.immuni.2022.03.006

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @scibot

      SciCrunch record: RRID:SCR_017683

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    sciencedirect.com/science/article/pii/S1074761322001297
  34. Jan 2022
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
    1
    1. scibot 07 Jan 2022
      RRID:SCR_017683

      DOI: 10.7554/eLife.69843

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8709578/
  36. Sep 2021
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Parallel Reporter Assays Identify Altered Regulatory Role of rs684232 in Leading to Prostate Cancer Predisposition
    1
    1. scibot 04 Sep 2021
      RRID:SCR_017683

      DOI: 10.3390/ijms22168792

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8395720/
  38. May 2021
  39. www.nature.com www.nature.com
    Loss of Ambra1 promotes melanoma growth and invasion
    1
    1. scibot 12 May 2021
      RRID:SCR_017683

      DOI: 10.1038/s41467-021-22772-2

      Resource: TCGAbiolinks (RRID:SCR_017683)

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    nature.com/articles/s41467-021-22772-2
  40. Dec 2020
  41. link.springer.com link.springer.com
    Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites
    1
    1. scibot 07 Dec 2020
      RRID:SCR_017683

      DOI: 10.1186/s12915-020-00910-4

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @Naa003

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      RRIDCUR:Validated RRID:SCR_017683
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    link.springer.com/article/10.1186/s12915-020-00910-4
  42. Sep 2020
  43. elifesciences.org elifesciences.org
    CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications
    1
    1. scibot 26 Sep 2020
      RRID:SCR_017683

      DOI: 10.7554/eLife.50267

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @evieth

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    elifesciences.org/articles/50267
  44. www.sciencedirect.com www.sciencedirect.com
    Failed Apoptosis Enhances Melanoma Cancer Cell Aggressiveness
    1
    1. scibot 09 Sep 2020
      RRID:SCR_017683

      DOI: 10.1016/j.celrep.2020.107731

      Resource: TCGAbiolinks (RRID:SCR_017683)

      Curator: @ethanbadger

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    sciencedirect.com/science/article/pii/S2211124720307117