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DeMBA: a developmental atlas for navigating the mouse brain in space and time

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1. scibot 06 Sep 2025
  
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  DOI: 10.1038/s41467-025-63177-9
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12397216/
Jul 2025
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A genetically defined pontine nucleus essential for ingestion in mice

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1. scibot 31 Jul 2025
  
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  DOI: 10.1073/pnas.2411174122
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12305073/
Jun 2025
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Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice

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1. scibot 18 Jun 2025
  
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sciencedirect.com/science/article/pii/S2211124725005984
Apr 2025
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Molecular elucidation of brain lipofuscin in aging and Neuronal Ceroid Lipofuscinosis

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1. scibot 19 Apr 2025
  
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  DOI: 10.21203/rs.3.rs-6010379/v1
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11957193/
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An orexin-sensitive subpopulation of layer 6 neurons regulates cortical excitability and anxiety behaviour

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1. scibot 18 Apr 2025
  
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  DOI: 10.1038/s41398-025-03350-2
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11997144/
www.biorxiv.org www.biorxiv.org

Differences in Cajal-Retzius cell density and postnatal persistence across cortical areas revealed by a novel intersectional genetic labeling approach

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1. scibot 13 Apr 2025
  
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  DOI: 10.1101/2025.04.09.647949
  
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biorxiv.org/content/10.1101/2025.04.09.647949v1
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DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning

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1. scibot 03 Apr 2025
  
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  DOI: 10.1038/s41593-025-01923-4
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12081306/
Mar 2025
www.biorxiv.org www.biorxiv.org

Seed structure and phosphorylation in the fuzzy coat impact tau seeding competency

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1. scibot 14 Mar 2025
  
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  DOI: 10.1101/2025.03.07.642026
  
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biorxiv.org/content/10.1101/2025.03.07.642026v1
Feb 2025
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Network analysis of α-synuclein pathology progression reveals p21-activated kinases as regulators of vulnerability

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1. scibot 07 Feb 2025
  
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  DOI: 10.1101/2024.10.22.619411
  
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biorxiv.org/content/10.1101/2024.10.22.619411v1
Dec 2024
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A topographical atlas of αSyn dosage and cell-type expression in the mouse brain and periphery

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1. scibot 07 Dec 2024
  
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  DOI: 10.1101/2023.10.05.559770
  
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biorxiv.org/content/10.1101/2023.10.05.559770v1
Nov 2024
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Bidirectional Control of Emotional Behaviors by Excitatory and Inhibitory Neurons in the Orbitofrontal Cortex

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1. scibot 26 Nov 2024
  
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  DOI: 10.5607/en24021
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11581826/
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The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation

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1. scibot 24 Nov 2024
  
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  DOI: 10.1016/j.neuint.2024.105899
  
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sciencedirect.com/science/article/pii/S0197018624002262
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Localization of brain neuronal IL-1R1 reveals specific neural circuitries responsive to immune signaling

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1. scibot 21 Nov 2024
  
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  DOI: 10.1186/s12974-024-03287-1
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11575132/
Oct 2024
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Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

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1. scibot 02 Oct 2024
  
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  DOI: 10.1038/s41597-024-03863-3
  
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nature.com/articles/s41597-024-03863-3
Aug 2024
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Visual experience reduces the spatial redundancy between cortical feedback inputs and primary visual cortex neurons

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1. scibot 21 Aug 2024
  
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  DOI: 10.1016/j.neuron.2024.07.009
  
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sciencedirect.com/science/article/pii/S0896627324005312
Jul 2024
www.biorxiv.org www.biorxiv.org

An orexin-sensitive subpopulation of layer 6 neurons regulates cortical excitability and anxiety behaviour

1
1. scibot 30 Jul 2024
  
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  DOI: 10.1101/2024.07.25.605138
  
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biorxiv.org/content/10.1101/2024.07.25.605138v1
May 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

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1. scibot 23 May 2024
  
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  RRID:SCR_017978
  
  DOI: 10.1038/s42003-024-06242-1
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11106287/
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The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation

1
1. scibot 16 May 2024
  
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  RRID:SCR_017978
  
  DOI: 10.1101/2024.03.05.583309
  
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biorxiv.org/content/10.1101/2024.03.05.583309v1
Mar 2024
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Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology

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1. scibot 28 Mar 2024
  
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  DOI: 10.1038/s41467-024-47027-8
  
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nature.com/articles/s41467-024-47027-8
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A topographical atlas of α-synuclein dosage and cell type-specific expression in adult mouse brain and peripheral organs

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1. scibot 22 Mar 2024
  
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  DOI: 10.1038/s41531-024-00672-8
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10951202/
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LRRK2 kinase inhibition reverses G2019S mutation-dependent effects on tau pathology progression

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1. scibot 06 Mar 2024
  
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  DOI: 10.1186/s40035-024-00403-2
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10910783/
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

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1. scibot 28 Feb 2024
  
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  DOI: 10.3389/fninf.2024.1284107
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10884250/
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Shared and distinct brain regions targeted for immediate early gene expression by ketamine and psilocybin

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1. scibot 02 Feb 2024
  
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  DOI: 10.1021/acschemneuro.2c00637
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9898239/
Oct 2023
www.nature.com www.nature.com

Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration

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1. scibot 06 Oct 2023
  
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  DOI: 10.1038/s41592-023-02034-3
  
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nature.com/articles/s41592-023-02034-3
Sep 2023
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DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

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1. scibot 28 Sep 2023
  
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  DOI: 10.1038/s41467-023-41645-4
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10514056/
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The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain

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1. scibot 22 Sep 2023
  
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  DOI: 10.1038/s41597-023-02527-y
  
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nature.com/articles/s41597-023-02527-y
Jul 2023
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A comprehensive atlas of perineuronal net distribution and colocalization with parvalbumin in the adult mouse brain

2
1. scibot 13 Jul 2023
  
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  RRID: SCR_017978
  
  DOI: 10.1016/j.celrep.2023.112788
  
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2. scibot 13 Jul 2023
  
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  DOI: 10.1016/j.celrep.2023.112788
  
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sciencedirect.com/science/article/pii/S2211124723007994
May 2023
www.biorxiv.org www.biorxiv.org

Spatial transcriptomics reveals molecular dysfunction associated with Lewy pathology

1
1. scibot 25 May 2023
  
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  DOI: 10.1101/2023.05.17.541144
  
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biorxiv.org/content/10.1101/2023.05.17.541144v1
Mar 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia

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1. scibot 24 Mar 2023
  
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  DOI: 10.1038/s41597-023-02012-6
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10030855/
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Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model

1
1. scibot 22 Mar 2023
  
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  DOI: 10.1101/2023.02.27.530226
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10002670/
www.frontiersin.org www.frontiersin.org

A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting

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1. scibot 18 Mar 2023
  
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  DOI: 10.3389/fninf.2023.1154080
  
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frontiersin.org/articles/10.3389/fninf.2023.1154080/full
Feb 2023
www.biorxiv.org www.biorxiv.org

A Comprehensive Atlas of Perineuronal Net Distribution and Colocalization with Parvalbumin in the Adult Mouse Brain

1
1. scibot 03 Feb 2023
  
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  DOI: 10.1101/2023.01.24.525313
  
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biorxiv.org/content/10.1101/2023.01.24.525313v1
Nov 2022
www.science.org www.science.org

Atlas-based data integration for mapping the connections and architecture of the brain

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1. scibot 08 Nov 2022
  
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  RRID:SCR_017978
  
  DOI: 10.1126/science.abq2594
  
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science.org/doi/10.1126/science.abq2594
Apr 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1

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1. scibot 13 Apr 2022
  
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  RRID:SCR_017978
  
  DOI: 10.1242/dev.200026
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8959144/