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Dec 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Mega-scale single-cell profiling reveals novel biomarkers associated with acute GvHD after allogeneic hematopoietic stem cell transplantation

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1. scibot 05 Dec 2025
  
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  DOI: 10.1186/s40364-025-00868-x
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12670839/
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Early lymph node T follicular helper cell signalling hub drives influenza vaccine response in an ancestrally diverse cohort

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1. scibot 04 Dec 2025
  
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  DOI: 10.1016/j.ebiom.2025.106036
  
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sciencedirect.com:5037/science/article/pii/S2352396425004803
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Dual role of Oct4 and Sox2 in controlling the developmental capacity and timing of tissue morphogenesis in the embryonic lineage

1
1. scibot 03 Dec 2025
  
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  DOI: 10.1016/j.devcel.2025.11.003
  
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sciencedirect.com:5037/science/article/pii/S1534580725006951
Nov 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Tissue-specific immunosuppressive and proliferating macrophages fuel early metastatic progression of human colorectal cancer to liver

1
1. scibot 08 Nov 2025
  
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  DOI: 10.1158/2326-6066.CIR-25-0031
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12580778/
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In vivo differentiation of embryonic cells devoid of key reprogramming factors

1
1. scibot 01 Nov 2025
  
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  DOI: 10.1016/j.celrep.2025.116498
  
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sciencedirect.com/science/article/pii/S2211124725012690
Oct 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Pan-cancer Analyses Refine the Single-Cell Portrait of Tumor-Infiltrating Dendritic Cells

1
1. scibot 03 Oct 2025
  
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  DOI: 10.1158/0008-5472.CAN-24-3595
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12485386/
Sep 2025
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An antibody-toxin conjugate targeting CD47 linked to the bacterial toxin listeriolysin O for cancer immunotherapy

1
1. scibot 06 Sep 2025
  
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  DOI: 10.1038/s43018-025-00919-0
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11952976/
Aug 2025
www.nature.com www.nature.com

Endocardial primary cilia and blood flow regulate EndoMT during endocardial cushion development

1
1. scibot 30 Aug 2025
  
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  DOI: 10.1038/s44161-025-00697-z
  
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nature.com/articles/s44161-025-00697-z
Jul 2025
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TAF1 is required for fetal but not adult hematopoiesis in mice

1
1. scibot 17 Jul 2025
  
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  DOI: 10.1016/j.devcel.2025.06.027
  
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sciencedirect.com/science/article/pii/S1534580725004058
www.biorxiv.org www.biorxiv.org

A developmental program of early residency promotes the differentiation of divergent uterine NK cell subsets in humans

1
1. scibot 15 Jul 2025
  
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  DOI: 10.1101/2025.07.05.663267
  
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biorxiv.org/content/10.1101/2025.07.05.663267v1
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TET2-mutant myeloid cells mitigate Alzheimer’s disease progression via CNS infiltration and enhanced phagocytosis in mice

1
1. scibot 10 Jul 2025
  
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  DOI: 10.1016/j.stem.2025.06.006
  
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cell.com/cell-stem-cell/fulltext/S1934-5909(25)00228-0
Apr 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Determinants of Response to Sequential Pembrolizumab with Trastuzumab plus Platinum/5-FU in HER2-Positive Gastric Cancer: A Phase II Chemoimmunotherapy Trial

1
1. scibot 19 Apr 2025
  
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  DOI: 10.1158/1078-0432.CCR-24-3528
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11995005/
Mar 2025
52.53.155.43 52.53.155.43

1-s2.0-S2589004225005565-main-html.html

1
1. scibot 28 Mar 2025
  
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  DOI: 10.1016/j.isci.2025.112295
  
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52.53.155.43/60bd8b63b5057b3a2fd52107fc36eb4f600f9b31/1-s2.0-S2589004225005565-main-html.html
Feb 2025
www.sciencedirect.com www.sciencedirect.com

Myofibroblasts emerge during alveolar regeneration following influenza-virus-induced lung injury

1
1. scibot 04 Feb 2025
  
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  DOI: 10.1016/j.celrep.2025.115248
  
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sciencedirect.com/science/article/pii/S2211124725000191
Jan 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Neonatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography

1
1. scibot 24 Jan 2025
  
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  DOI: 10.1523/ENEURO.0224-24.2024
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11680506/
Dec 2024
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Microglial lipid phosphatase SHIP1 limits complement-mediated synaptic pruning in the healthy developing hippocampus

1
1. scibot 10 Dec 2024
  
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  DOI: 10.1016/j.immuni.2024.11.003
  
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sciencedirect.com/science/article/pii/S1074761324005132
Nov 2024
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Control of Murine Brown Adipocyte Development by GATA6

1
1. scibot 16 Nov 2024
  
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  DOI: 10.1016/j.devcel.2023.08.003
  
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pmc.ncbi.nlm.nih.gov/articles/PMC10842351/
Sep 2024
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Targeting EGLN2/PHD1 protects motor neurons and normalizes the astrocytic interferon response

1
1. scibot 10 Sep 2024
  
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  DOI: 10.1016/j.celrep.2024.114719
  
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sciencedirect.com/science/article/pii/S2211124724010702
Aug 2024
www.biorxiv.org www.biorxiv.org

Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data

1
1. scibot 23 Aug 2024
  
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  DOI: 10.1101/2024.08.13.607784
  
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biorxiv.org/content/10.1101/2024.08.13.607784v1
May 2024
www.cell.com www.cell.com

Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3′ UTR of FAIM2

1
1. scibot 02 May 2024
  
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  DOI: 10.1016/j.xgen.2024.100556
  
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cell.com/cell-genomics/fulltext/S2666-979X(24)00122-8
Mar 2024
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Villus myofibroblasts are developmental and adult progenitors of mammalian gut lymphatic musculature

2
1. scibot 28 Mar 2024
  
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  DOI: 10.1016/j.devcel.2024.03.005
  
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  DOI: 10.1016/j.devcel.2024.03.005
  
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sciencedirect.com/science/article/pii/S1534580724001461
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Mutant p53 protects triple-negative breast adenocarcinomas from ferroptosis in vivo

1
1. scibot 15 Feb 2024
  
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  DOI: 10.1126/sciadv.adk1835
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10866549/
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A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1

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1. scibot 08 Feb 2024
  
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  DOI: 10.1038/s41467-024-45067-8
  
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nature.com/articles/s41467-024-45067-8
Jan 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function

1
1. scibot 20 Jan 2024
  
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  DOI: 10.1101/2023.12.20.570481
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10769259/
Dec 2023
www.science.org www.science.org

A single-cell multi-omic atlas spanning the adult rhesus macaque brain

1
1. scibot 09 Dec 2023
  
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  RRID:SCR_018098
  
  DOI: 10.1126/sciadv.adh1914
  
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science.org/doi/10.1126/sciadv.adh1914
Oct 2023
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Single-cell and spatial analyses reveal a tradeoff between murine mammary proliferation and lineage programs associated with endocrine cues

1
1. scibot 27 Oct 2023
  
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  DOI: 10.1016/j.celrep.2023.113293
  
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sciencedirect.com/science/article/pii/S2211124723013050
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A single-cell multi-omic atlas spanning the adult rhesus macaque brain

1
1. scibot 14 Oct 2023
  
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  DOI: 10.1126/sciadv.adh1914
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10569716/
Sep 2023
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Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice

1
1. scibot 01 Sep 2023
  
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  DOI: 10.1016/j.neuron.2023.08.004
  
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sciencedirect.com/science/article/pii/S0896627323005858
Aug 2023
www.biorxiv.org www.biorxiv.org

Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3’ UTR of FAIM2

1
1. scibot 27 Aug 2023
  
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  RRID:SCR_018098
  
  DOI: 10.1101/2023.08.21.553157
  
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biorxiv.org/content/10.1101/2023.08.21.553157v1
Jun 2023
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hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data

1
1. scibot 16 Jun 2023
  
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  DOI: 10.1016/j.crmeth.2023.100498
  
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sciencedirect.com/science/article/pii/S2667237523001273
May 2023
52.53.155.43 52.53.155.43

Efficient self-organization of blastoids solely from mouse ESCs is facilitated by transient reactivation of 2C gene network

1
1. scibot 27 May 2023
  
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  DOI: 10.1101/2023.04.12.536583
  
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52.53.155.43/d6c42894cd1d74c54111e2279a70a7e2e2f22de0/2023.04.12.536583v1.full-html.html
Dec 2022
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Dental niche cells directly contribute to tooth reconstitution and morphogenesis

1
1. scibot 08 Dec 2022
  
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  DOI: 10.1016/j.celrep.2022.111737
  
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sciencedirect.com/science/article/pii/S2211124722016151
Jul 2022
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Group 3 innate lymphocytes make a distinct contribution to Type 17 immunity in bladder defence

1
1. scibot 09 Jul 2022
  
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  DOI: 10.1016/j.isci.2022.104660
  
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sciencedirect.com/science/article/pii/S2589004222009324
May 2022
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Stromal AR inhibits prostate tumor progression by restraining secretory luminal epithelial cells

1
1. scibot 26 May 2022
  
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  RRID:SCR_018098
  
  DOI: 10.1016/j.celrep.2022.110848
  
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sciencedirect.com/science/article/pii/S2211124722006210
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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

1
1. scibot 14 May 2022
  
  in Public
  
  RRID:SCR_018098
  
  DOI: 10.1101/2020.02.29.970558
  
  Resource: Scrublet (RRID:SCR_018098)
  
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biorxiv.org/content/10.1101/2020.02.29.970558v2
Dec 2021
www.sciencedirect.com www.sciencedirect.com

Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration

1
1. scibot 22 Dec 2021
  
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  RRID:SCR_018098
  
  DOI: 10.1016/j.celrep.2021.110131
  
  Resource: Scrublet (RRID:SCR_018098)
  
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sciencedirect.com/science/article/pii/S2211124721016272
Oct 2021
www.nature.com www.nature.com

An atlas of gene regulatory elements in adult mouse cerebrum

1
1. scibot 21 Oct 2021
  
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  RRID:SCR_018098
  
  DOI: 10.1038/s41586-021-03604-1
  
  Resource: Scrublet (RRID:SCR_018098)
  
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nature.com/articles/s41586-021-03604-1
www.nature.com www.nature.com

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

1
1. scibot 14 Oct 2021
  
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  RRID:SCR_018098
  
  DOI: 10.1038/s41586-021-03500-8
  
  Resource: Scrublet (RRID:SCR_018098)
  
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nature.com/articles/s41586-021-03500-8
Apr 2021
www.sciencedirect.com www.sciencedirect.com

Lysosomal lipoprotein processing in endothelial cells stimulates adipose tissue thermogenic adaptation

1
1. scibot 30 Apr 2021
  
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  RRID:SCR_018098
  
  DOI: 10.1016/j.cmet.2020.12.001
  
  Resource: Scrublet (RRID:SCR_018098)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S1550413120306562
Feb 2021
www.biorxiv.org www.biorxiv.org

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

1
1. scibot 25 Feb 2021
  
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  RRID:SCR_018098
  
  DOI: 10.1101/2020.05.10.087585
  
  Resource: Scrublet (RRID:SCR_018098)
  
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biorxiv.org/content/10.1101/2020.05.10.087585v2
Jan 2021
www.sciencedirect.com www.sciencedirect.com

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing

1
1. scibot 05 Jan 2021
  
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  SCR_018098
  
  DOI: 10.1016/j.celrep.2020.108566
  
  Resource: Scrublet (RRID:SCR_018098)
  
  Curator: @Naa003
  
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  RRIDCUR:Validated RRID:SCR_018098
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sciencedirect.com/science/article/pii/S2211124720315552
Sep 2020
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

1
1. scibot 23 Sep 2020
  
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  RRID:SCR_018098
  
  DOI: 10.1016/j.celrep.2020.108175
  
  Resource: Scrublet (RRID:SCR_018098)
  
  Curator: @evieth
  
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  RRID:SCR_018098 RRIDCUR:Validated
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pubmed.ncbi.nlm.nih.gov/32946807/