65 Matching Annotations
  1. Jun 2024
  2. www.sciencedirect.com www.sciencedirect.com
    SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis
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    1. scibot 04 Jun 2024
      RRID:SCR_018139

      DOI: 10.1016/j.xgen.2024.100581

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    sciencedirect.com/science/article/pii/S2666979X24001654
  3. May 2024
  4. www.biorxiv.org www.biorxiv.org
    Single-cell sequencing of rodent ventral pallidum reveals diverse neuronal subtypes with non-canonical interregional continuity
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    1. scibot 29 May 2024
      RRID:SCR 018139

      DOI: 10.1101/2024.03.18.585611

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    biorxiv.org/content/10.1101/2024.03.18.585611v1
  5. www.sciencedirect.com www.sciencedirect.com
    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
    1
    1. scibot 23 May 2024
      RRID:SCR_018139

      DOI: 10.1016/j.immuni.2024.04.026

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    sciencedirect.com/science/article/pii/S1074761324002310
  6. www.biorxiv.org www.biorxiv.org
    Early precursor-derived pituitary gland tissue-resident macrophages play a pivotal role in modulating hormonal balance
    1
    1. scibot 16 May 2024
      SCR_018139

      DOI: 10.1101/2024.05.07.592305

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    biorxiv.org/content/10.1101/2024.05.07.592305v1
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor niche network-defined subtypes predict immunotherapy response of esophageal squamous cell cancer
    1
    1. scibot 15 May 2024
      RRID:SCR_018139

      DOI: 10.1016/j.isci.2024.109795

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    ncbi.nlm.nih.gov/pmc/articles/PMC11089351/
  8. Apr 2024
  9. www.sciencedirect.com www.sciencedirect.com
    ER-associated degradation adapter Sel1L is required for CD8+ T cell function and memory formation following acute viral infection
    1
    1. scibot 30 Apr 2024
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2024.114156

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    sciencedirect.com/science/article/pii/S2211124724004844
  10. www.sciencedirect.com www.sciencedirect.com
    Generation of human cerebral organoids with a structured outer subventricular zone
    1
    1. scibot 09 Apr 2024
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2024.114031

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    sciencedirect.com/science/article/pii/S2211124724003590
  11. Mar 2024
  12. www.sciencedirect.com www.sciencedirect.com
    Villus myofibroblasts are developmental and adult progenitors of mammalian gut lymphatic musculature
    2
    1. scibot 28 Mar 2024
      SCR_018139

      DOI: 10.1016/j.devcel.2024.03.005

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    2. scibot 28 Mar 2024
      SCR_018139

      DOI: 10.1016/j.devcel.2024.03.005

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    sciencedirect.com/science/article/pii/S1534580724001461
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deciphering the spatiotemporal transcriptional and chromatin accessibility of human retinal organoid development at the single-cell level
    1
    1. scibot 22 Mar 2024
      RRID:SCR_018139

      DOI: 10.1016/j.isci.2024.109397

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    ncbi.nlm.nih.gov/pmc/articles/PMC10952046/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Systems immunology of transcriptional responses to viral infection identifies conserved antiviral pathways across macaques and humans
    1
    1. scibot 10 Mar 2024
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2024.113706

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    ncbi.nlm.nih.gov/pmc/articles/PMC10915397/
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
    1
    1. scibot 06 Mar 2024
      RRID:SCR_018139

      DOI: 10.1158/2159-8290.CD-22-1297

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    ncbi.nlm.nih.gov/pmc/articles/PMC10527971/
  16. Feb 2024
  17. dx.doi.org dx.doi.org
    EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics
    1
    1. scibot 28 Feb 2024
      RRID:SCR_018139

      DOI: 10.1093/gigascience/giad097

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    dx.doi.org/10.1093/gigascience/giad097
  18. www.sciencedirect.com www.sciencedirect.com
    Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease
    1
    1. scibot 22 Feb 2024
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2024.113784

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    sciencedirect.com/science/article/pii/S2211124724001128
  19. www.biorxiv.org www.biorxiv.org
    A Mutation-driven oncofetal regression fuels phenotypic plasticity in colorectal cancer
    1
    1. scibot 09 Feb 2024
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      DOI: 10.1101/2023.12.10.570854

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    biorxiv.org/content/10.1101/2023.12.10.570854v1
  20. Dec 2023
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles
    1
    1. scibot 20 Dec 2023
      RRID:SCR_018139

      DOI: 10.1186/s13059-023-03129-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC10726524/
  22. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
    1
    1. scibot 09 Dec 2023
      RRID:SCR_018139

      DOI: 10.1126/sciadv.adh1914

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    science.org/doi/10.1126/sciadv.adh1914
  23. 52.53.155.43 52.53.155.43
    cd-22-1301-html.html
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    1. scibot 01 Dec 2023
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      DOI: 10.1158/2159-8290.cd-22-1301

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    52.53.155.43/ed2c7eab61775ee4a9efbdfa91d6b4b18a13354a/cd-22-1301-html.html
  24. Oct 2023
  25. www.sciencedirect.com www.sciencedirect.com
    Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages
    1
    1. scibot 28 Oct 2023
      RRID:SCR_018139

      DOI: 10.1016/j.devcel.2023.09.011

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    sciencedirect.com/science/article/pii/S1534580723005130
  26. www.sciencedirect.com www.sciencedirect.com
    Single-cell and spatial analyses reveal a tradeoff between murine mammary proliferation and lineage programs associated with endocrine cues
    1
    1. scibot 27 Oct 2023
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2023.113293

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    sciencedirect.com/science/article/pii/S2211124723013050
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
    1
    1. scibot 14 Oct 2023
      RRID:SCR_018139

      DOI: 10.1126/sciadv.adh1914

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    ncbi.nlm.nih.gov/pmc/articles/PMC10569716/
  28. Sep 2023
  29. www.sciencedirect.com www.sciencedirect.com
    Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer’s disease pathology
    1
    1. scibot 30 Sep 2023
      RRID:SCR_018139

      DOI: 10.1016/j.cell.2023.08.039

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    sciencedirect.com/science/article/pii/S009286742300973X
  30. Aug 2023
  31. www.sciencedirect.com www.sciencedirect.com
    Single-cell analysis of the developing human ovary defines distinct insights into ovarian somatic and germline progenitors
    1
    1. scibot 16 Aug 2023
      RRID:SCR_018139

      DOI: 10.1016/j.devcel.2023.07.014

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    sciencedirect.com/science/article/pii/S1534580723003611
  32. Jul 2023
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
    1
    1. scibot 15 Jul 2023
      RRID:SCR_018139

      DOI: 10.7554/eLife.86127

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    ncbi.nlm.nih.gov/pmc/articles/PMC10344426/
  34. Jun 2023
  35. www.sciencedirect.com www.sciencedirect.com
    hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
    1
    1. scibot 16 Jun 2023
      SCR_018139

      DOI: 10.1016/j.crmeth.2023.100498

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    sciencedirect.com/science/article/pii/S2667237523001273
  36. May 2023
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of transcriptional heterogeneity in aged human muscle stem cells
    1
    1. scibot 18 May 2023
      RRID:SCR_018139

      DOI: 10.1371/journal.pone.0285018

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    ncbi.nlm.nih.gov/pmc/articles/PMC10187936/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CHD-associated enhancers shape human cardiomyocyte lineage commitment
    1
    1. scibot 06 May 2023
      RRID:SCR_018139

      DOI: 10.7554/eLife.86206

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    ncbi.nlm.nih.gov/pmc/articles/PMC10156167/
  39. Apr 2023
  40. www.biorxiv.org www.biorxiv.org
    Single cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, ageing and disease
    1
    1. scibot 27 Apr 2023
      RRID:SCR_018139

      DOI: 10.1101/2023.04.20.537553

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    biorxiv.org/content/10.1101/2023.04.20.537553v1
  41. Mar 2023
  42. www.sciencedirect.com www.sciencedirect.com
    Neuronal identity defines α-synuclein and tau toxicity
    1
    1. scibot 28 Mar 2023
      RRID:SCR_018139

      DOI: 10.1016/j.neuron.2023.02.033

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    sciencedirect.com/science/article/pii/S0896627323001666
  43. www.sciencedirect.com www.sciencedirect.com
    Single-cell transcriptomic profiling redefines the origin and specification of early adrenogonadal progenitors
    1
    1. scibot 02 Mar 2023
      RRID:SCR_018139

      DOI: 10.1016/j.celrep.2023.112191

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    sciencedirect.com/science/article/pii/S2211124723002024
  44. Dec 2022
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells
    1
    1. scibot 01 Dec 2022
      RRID:SCR_018139

      DOI: 10.1016/j.isci.2022.105571

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    ncbi.nlm.nih.gov/pmc/articles/PMC9659354/
  46. Nov 2022
  47. www.sciencedirect.com www.sciencedirect.com
    Tumor-intrinsic SIRPA promotes sensitivity to checkpoint inhibition immunotherapy in melanoma
    1
    1. scibot 04 Nov 2022
      RRID:SCR_018139

      DOI: 10.1016/j.ccell.2022.10.012

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    sciencedirect.com/science/article/pii/S1535610822005037
  48. Sep 2022
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A unified view of low complexity regions (LCRs) across species
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    1. scibot 21 Sep 2022
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      DOI: 10.7554/eLife.77058

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    ncbi.nlm.nih.gov/pmc/articles/PMC9470157/
  50. www.sciencedirect.com www.sciencedirect.com
    Linking transcriptomes with morphological and functional phenotypes in mammalian retinal ganglion cells
    1
    1. scibot 15 Sep 2022
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      DOI: 10.1016/j.celrep.2022.111322

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    sciencedirect.com/science/article/pii/S2211124722011469
  51. Jun 2022
  52. www.sciencedirect.com www.sciencedirect.com
    Absence of microglia promotes diverse pathologies and early lethality in Alzheimer’s disease mice
    1
    1. scibot 15 Jun 2022
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      DOI: 10.1016/j.celrep.2022.110961

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    sciencedirect.com/science/article/pii/S2211124722007434
  53. May 2022
  54. www.sciencedirect.com www.sciencedirect.com
    Stromal AR inhibits prostate tumor progression by restraining secretory luminal epithelial cells
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    1. scibot 26 May 2022
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      DOI: 10.1016/j.celrep.2022.110848

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    sciencedirect.com/science/article/pii/S2211124722006210
  55. Apr 2022
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The need to reassess single-cell RNA sequencing datasets: the importance of biological sample processing
    1
    1. scibot 12 Apr 2022
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      DOI: 10.12688/f1000research.54864.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC8984215/
  57. www.sciencedirect.com www.sciencedirect.com
    Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease
    1
    1. scibot 08 Apr 2022
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      DOI: 10.1016/j.stem.2022.03.003

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    sciencedirect.com/science/article/pii/S1934590922001011
  58. Jan 2022
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Role of distinct fibroblast lineages and immune cells in dermal repair following UV radiation-induced tissue damage
    1
    1. scibot 15 Jan 2022
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      DOI: 10.7554/eLife.71052

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    ncbi.nlm.nih.gov/pmc/articles/PMC8747514/
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    External signals regulate continuous transcriptional states in hematopoietic stem cells
    1
    1. scibot 07 Jan 2022
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      DOI: 10.7554/eLife.66512

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    ncbi.nlm.nih.gov/pmc/articles/PMC8700284/
  61. Dec 2021
  62. www.sciencedirect.com www.sciencedirect.com
    Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration
    1
    1. scibot 22 Dec 2021
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      DOI: 10.1016/j.celrep.2021.110131

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    sciencedirect.com/science/article/pii/S2211124721016272
  63. elifesciences.org elifesciences.org
    scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution
    1
    1. scibot 01 Dec 2021
      RRID:SCR_018139

      DOI: 10.7554/eLife.64175

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  64. Nov 2021
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality
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  66. Sep 2021
  67. www.sciencedirect.com www.sciencedirect.com
    Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    TGFβ signalling is required to maintain pluripotency of human naïve pluripotent stem cells
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  69. Aug 2021
  70. www.sciencedirect.com www.sciencedirect.com
    Human brain organoids assemble functionally integrated bilateral optic vesicles
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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular characterization of projection neuron subtypes in the mouse olfactory bulb
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  72. 52.53.155.43 52.53.155.43
    F1000Research Article: The need to reassess single-cell RNA sequencing datasets: more is not always better.
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  73. Jul 2021
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct skeletal stem cell types orchestrate long bone skeletogenesis
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  75. May 2021
  76. academic.oup.com academic.oup.com
    Dynamic profiles and transcriptional preferences of histone modifications during spermiogenesis
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    A single-cell analysis of the Arabidopsis vegetative shoot apex
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  78. Apr 2021
  79. www.sciencedirect.com www.sciencedirect.com
    The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis
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    Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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    BET Inhibition Blocks Inflammation-Induced Cardiac Dysfunction and SARS-CoV-2 Infection
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  83. Feb 2021
  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RUNX1 marks a luminal castration-resistant lineage established at the onset of prostate development
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
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  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
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  87. Dec 2020
  88. www.cell.com www.cell.com
    Smoothelin-like 2 Inhibits Coronin-1B to Stabilize the Apical Actin Cortex during Epithelial Morphogenesis
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    cell.com/current-biology/abstract/S0960-9822(20)31685-7
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
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  90. Nov 2020
  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus
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  92. Oct 2020
  93. elifesciences.org elifesciences.org
    Dynamics of nevus development implicate cell cooperation in the growth arrest of transformed melanocytes
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      DOI: 10.7554/eLife.61026

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  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds
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  95. Sep 2020
  96. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
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