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  1. Aug 2025
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    AI-driven multimodal algorithm predicts immunotherapy and targeted therapy outcomes in clear cell renal cell carcinoma
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    The urokinase receptor/uPAR is a major effector of p53 gain-of-function mutations in gemcitabine-treated pancreatic ductal adenocarcinoma
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    Chevreul: an R bioconductor package for exploratory analysis of full-length single cell sequencing
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  5. Jul 2025
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    Characterization of human CMV-specific CD8+ T cells using multi-layer single-cell omics
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    Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma
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    TAF1 is required for fetal but not adult hematopoiesis in mice
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    SeuratExtend: streamlining single-cell RNA-seq analysis through an integrated and intuitive framework
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    TET2-mutant myeloid cells mitigate Alzheimer’s disease progression via CNS infiltration and enhanced phagocytosis in mice
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  12. Jun 2025
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    Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration
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  15. May 2025
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    Molecular and spatial transcriptomic classification of midbrain dopamine neurons and their alterations in a LRRK2G2019S model of Parkinson’s disease
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  17. Apr 2025
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    Protocol for deep-learning-driven cell type label transfer in single-cell RNA sequencing data
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    Ontogeny Dictates Oncogenic Potential, Lineage Hierarchy, and Therapy Response in Pediatric Leukemia
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    Stratification of enterochromaffin cells by single-cell expression analysis
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    Spatially Resolved Tumor Ecosystems and Cell States in Gastric Adenocarcinoma Progression and Evolution
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  22. Mar 2025
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    Spatial transcriptomics in the adult Drosophila brain and body
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    Comparative analysis of AAV serotypes for transduction of olfactory sensory neurons
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    Molecular and spatial transcriptomic classification of midbrain dopamine neurons and their alterations in a LRRK2G2019S model of Parkinson’s disease
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  27. Feb 2025
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  30. Jan 2025
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  32. Dec 2024
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  34. Nov 2024
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  36. Sep 2024
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    Targeting EGLN2/PHD1 protects motor neurons and normalizes the astrocytic interferon response
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  40. Aug 2024
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  44. Jul 2024
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    The primitive endoderm supports lineage plasticity to enable regulative development
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    Intraperitoneal activation of myeloid cells clears ascites and reveals IL27-dependent regression of metastatic ovarian cancer
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  47. Jun 2024
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    SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis
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  49. May 2024
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    Single-cell sequencing of rodent ventral pallidum reveals diverse neuronal subtypes with non-canonical interregional continuity
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  54. Apr 2024
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    ER-associated degradation adapter Sel1L is required for CD8+ T cell function and memory formation following acute viral infection
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    Generation of human cerebral organoids with a structured outer subventricular zone
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  57. Mar 2024
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    Villus myofibroblasts are developmental and adult progenitors of mammalian gut lymphatic musculature
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    Deciphering the spatiotemporal transcriptional and chromatin accessibility of human retinal organoid development at the single-cell level
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    Systems immunology of transcriptional responses to viral infection identifies conserved antiviral pathways across macaques and humans
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    A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
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  62. Feb 2024
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    EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics
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    Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease
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  66. Dec 2023
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  70. Oct 2023
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    Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages
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    Single-cell and spatial analyses reveal a tradeoff between murine mammary proliferation and lineage programs associated with endocrine cues
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  74. Sep 2023
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    Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer’s disease pathology
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  76. Aug 2023
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    Single-cell analysis of the developing human ovary defines distinct insights into ovarian somatic and germline progenitors
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  78. Jul 2023
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    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
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  80. Jun 2023
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    hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
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  82. May 2023
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    Loss of transcriptional heterogeneity in aged human muscle stem cells
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  85. Apr 2023
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    Single cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, ageing and disease
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  87. Mar 2023
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    Neuronal identity defines α-synuclein and tau toxicity
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    Single-cell transcriptomic profiling redefines the origin and specification of early adrenogonadal progenitors
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  90. Dec 2022
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    Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells
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  92. Nov 2022
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    Tumor-intrinsic SIRPA promotes sensitivity to checkpoint inhibition immunotherapy in melanoma
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  94. Sep 2022
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    A unified view of low complexity regions (LCRs) across species
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    Linking transcriptomes with morphological and functional phenotypes in mammalian retinal ganglion cells
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  97. Jun 2022
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    Absence of microglia promotes diverse pathologies and early lethality in Alzheimer’s disease mice
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  99. May 2022
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    Stromal AR inhibits prostate tumor progression by restraining secretory luminal epithelial cells
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  101. Apr 2022
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    The need to reassess single-cell RNA sequencing datasets: the importance of biological sample processing
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    Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease
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  104. Jan 2022
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    Role of distinct fibroblast lineages and immune cells in dermal repair following UV radiation-induced tissue damage
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    External signals regulate continuous transcriptional states in hematopoietic stem cells
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  107. Dec 2021
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    Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration
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    scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution
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  110. Nov 2021
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality
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  112. Sep 2021
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    Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation
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    TGFβ signalling is required to maintain pluripotency of human naïve pluripotent stem cells
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  115. Aug 2021
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    Human brain organoids assemble functionally integrated bilateral optic vesicles
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    Molecular characterization of projection neuron subtypes in the mouse olfactory bulb
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    F1000Research Article: The need to reassess single-cell RNA sequencing datasets: more is not always better.
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  119. Jul 2021
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    Distinct skeletal stem cell types orchestrate long bone skeletogenesis
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  121. May 2021
  122. academic.oup.com academic.oup.com
    Dynamic profiles and transcriptional preferences of histone modifications during spermiogenesis
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    A single-cell analysis of the Arabidopsis vegetative shoot apex
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  124. Apr 2021
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    The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis
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    Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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  128. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BET Inhibition Blocks Inflammation-Induced Cardiac Dysfunction and SARS-CoV-2 Infection
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    ncbi.nlm.nih.gov/pmc/articles/PMC7962543/
  129. Feb 2021
  130. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RUNX1 marks a luminal castration-resistant lineage established at the onset of prostate development
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  131. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
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    ncbi.nlm.nih.gov/pmc/articles/PMC7870145/
  132. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
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  133. Dec 2020
  134. www.cell.com www.cell.com
    Smoothelin-like 2 Inhibits Coronin-1B to Stabilize the Apical Actin Cortex during Epithelial Morphogenesis
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    cell.com/current-biology/abstract/S0960-9822(20)31685-7
  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
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    ncbi.nlm.nih.gov/pmc/articles/PMC7688309/
  136. Nov 2020
  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus
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    ncbi.nlm.nih.gov/pmc/articles/PMC7595735/
  138. Oct 2020
  139. elifesciences.org elifesciences.org
    Dynamics of nevus development implicate cell cooperation in the growth arrest of transformed melanocytes
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    elifesciences.org/articles/61026
  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds
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  141. Sep 2020
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    Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
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