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Jan 2026
www.sciencedirect.com www.sciencedirect.com

Spatial transcriptomics reveals altered communities and drivers of aberrant epithelia and pro-fibrotic fibroblasts in interstitial lung diseases

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  DOI: 10.1016/j.xgen.2025.101066
  
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sciencedirect.com/science/article/pii/S2666979X25003222
Dec 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

A Multipotent PROX1+ Tumor Stem/Progenitor Cell Population Emerges during Intestinal Tumorigenesis and Mediates Radioresistance in Colorectal Cancer

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pmc.ncbi.nlm.nih.gov/articles/PMC12666315/
Oct 2025
54.241.53.176 54.241.53.176

2025.09.26.678859v1.full-html.html

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54.241.53.176/6799670a7f30b57e9f6325ef120ecd132ee74343/2025.09.26.678859v1.full-html.html
Aug 2025
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Depletion of Effector Regulatory T Cells Associates with Major Response to Induction Dual Immune Checkpoint Blockade

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pmc.ncbi.nlm.nih.gov/articles/PMC12319410/
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Characteristics of a CCL21 gene-modified dendritic cell vaccine utilized for a clinical trial in non-small cell lung cancer

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pmc.ncbi.nlm.nih.gov/articles/PMC11813162/
Jun 2025
rupress.org rupress.org

Gut dysbiosis from high-salt diet promotes glioma via propionate-mediated TGF-β activation

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  DOI: 10.1084/jem.20241135
  
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rupress.org/jem/article/222/8/e20241135/277968/Gut-dysbiosis-from-high-salt-diet-promotes-glioma
Apr 2025
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Ontogeny Dictates Oncogenic Potential, Lineage Hierarchy, and Therapy Response in Pediatric Leukemia

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pmc.ncbi.nlm.nih.gov/articles/PMC11957141/
Mar 2025
52.53.155.43 52.53.155.43

PDF-html.html

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52.53.155.43/dee9a06bd4d5f7e409990fffe7937b86e5d2a784/PDF-html.html
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Comparative Single-Cell Transcriptomics of Human Neuroblastoma and Preclinical Models Reveals Conservation of an Adrenergic Cell State

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pmc.ncbi.nlm.nih.gov/articles/PMC11907193/
Feb 2025
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The endogenous antigen-specific CD8+ T cell repertoire is composed of unbiased and biased clonotypes with differential fate commitments

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  DOI: 10.1016/j.immuni.2025.02.001
  
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sciencedirect.com/science/article/pii/S1074761325000688
Oct 2024
aacrjournals.org aacrjournals.org

H3.3 G34W Promotes Growth and Impedes Differentiation of Osteoblast-Like Mesenchymal Progenitors in Giant Cell Tumor of Bone

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1. scibot 02 Oct 2024
  
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  DOI: 10.1158/2159-8290.CD-20-0461
  
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aacrjournals.org/cancerdiscovery/article/10/12/1968/2414/H3-3-G34W-Promotes-Growth-and-Impedes
Sep 2024
elifesciences.org elifesciences.org

Muscle-resident mesenchymal progenitors sense and repair peripheral nerve injury via the GDNF-BDNF axis

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1. scibot 28 Sep 2024
  
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  DOI: 10.7554/eLife.97662
  
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elifesciences.org/articles/97662
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CXCR4 orchestrates the TOX-programmed exhausted phenotype of CD8+ T cells via JAK2/STAT3 pathway

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1. scibot 26 Sep 2024
  
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  DOI: 10.1016/j.xgen.2024.100659
  
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sciencedirect.com/science/article/pii/S2666979X24002702
Jun 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Uncovering strain- and age-dependent innate immune responses to SARS-CoV-2 infection in air-liquid-interface cultured nasal epithelia

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1. scibot 14 Jun 2024
  
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  DOI: 10.1016/j.isci.2024.110009
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11166695/
May 2024
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Phenotypic and spatial heterogeneity of brain myeloid cells after stroke is associated with cell ontogeny, tissue damage, and brain connectivity

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1. scibot 21 May 2024
  
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  DOI: 10.1016/j.celrep.2024.114250
  
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sciencedirect.com/science/article/pii/S2211124724005783
www.biorxiv.org www.biorxiv.org

Early precursor-derived pituitary gland tissue-resident macrophages play a pivotal role in modulating hormonal balance

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1. scibot 16 May 2024
  
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  DOI: 10.1101/2024.05.07.592305
  
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biorxiv.org/content/10.1101/2024.05.07.592305v1
Feb 2024
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An iron rheostat controls hematopoietic stem cell fate

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  DOI: 10.1016/j.stem.2024.01.011
  
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sciencedirect.com/science/article/pii/S1934590924000419
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Therapy-Induced Senescence Contributes to the Efficacy of Abemaciclib in Patients with Dedifferentiated Liposarcoma

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1. scibot 23 Feb 2024
  
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  DOI: 10.1158/1078-0432.CCR-23-2378
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10870201/
www.biorxiv.org www.biorxiv.org

A Mutation-driven oncofetal regression fuels phenotypic plasticity in colorectal cancer

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1. scibot 09 Feb 2024
  
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  DOI: 10.1101/2023.12.10.570854
  
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biorxiv.org/content/10.1101/2023.12.10.570854v1
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A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1

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  DOI: 10.1038/s41467-024-45067-8
  
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nature.com/articles/s41467-024-45067-8
Jan 2024
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Establishing a 3D culture system for early organogenesis of monkey embryos ex vivo and single-cell transcriptome analysis of cultured embryos

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  DOI: 10.1016/j.xpro.2023.102835
  
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sciencedirect.com/science/article/pii/S266616672300802X
Dec 2023
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Multipotent progenitors instruct ontogeny of the superior colliculus

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  DOI: 10.1016/j.neuron.2023.11.009
  
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sciencedirect.com/science/article/pii/S0896627323008838
Nov 2023
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Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve

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1. scibot 18 Nov 2023
  
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  DOI: 10.1016/j.neuron.2023.10.025
  
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sciencedirect.com/science/article/pii/S0896627323008061
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LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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1. scibot 17 Nov 2023
  
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  DOI: 10.1126/sciadv.adh9543
  
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science.org/doi/10.1126/sciadv.adh9543
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LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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  DOI: 10.1126/sciadv.adh9543
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10619931/
Oct 2023
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Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages

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  DOI: 10.1016/j.devcel.2023.09.011
  
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sciencedirect.com/science/article/pii/S1534580723005130
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Single-cell and spatial analyses reveal a tradeoff between murine mammary proliferation and lineage programs associated with endocrine cues

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1. scibot 27 Oct 2023
  
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  DOI: 10.1016/j.celrep.2023.113293
  
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sciencedirect.com/science/article/pii/S2211124723013050
Aug 2023
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Novel human pluripotent stem cell-derived hypothalamus organoids demonstrate cellular diversity

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  DOI: 10.1016/j.isci.2023.107525
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10460991/
Jun 2023
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Transcriptomic landscape of early hair follicle and epidermal development

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  DOI: 10.1016/j.celrep.2023.112643
  
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sciencedirect.com/science/article/pii/S221112472300654X
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Asynchronous transcription and translation of neurotransmitter-related genes characterize the initial stages of neuronal maturation in Drosophila

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1. scibot 03 Jun 2023
  
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  DOI: 10.1371/journal.pbio.3002115
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10234549/
May 2023
www.biorxiv.org www.biorxiv.org

L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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  DOI: 10.1101/2023.03.04.531072
  
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biorxiv.org/content/10.1101/2023.03.04.531072v1
Mar 2023
europepmc.org europepmc.org

Jarid2 promotes temporal progression of retinal progenitors via repression of Foxp1

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1. scibot 16 Mar 2023
  
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  DOI: 10.1016/j.celrep.2023.112237
  
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europepmc.org/article/med/36924502
Nov 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Alternative splicing downstream of EMT enhances phenotypic plasticity and malignant behavior in colon cancer

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  DOI: 10.7554/eLife.82006
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9674345/
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CD8+ T cell metabolic rewiring defined by scRNA-seq identifies a critical role of ASNS expression dynamics in T cell differentiation

1
1. scibot 16 Nov 2022
  
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  DOI: 10.1016/j.celrep.2022.111639
  
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sciencedirect.com/science/article/pii/S2211124722015108
Sep 2022
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Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain

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1. scibot 30 Sep 2022
  
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  DOI: 10.1016/j.cell.2022.09.004
  
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sciencedirect.com/science/article/pii/S0092867422011266
May 2022
elifesciences.org elifesciences.org

Integrative analysis of scRNA-seq and scATAC-seq revealed transit-amplifying thymic epithelial cells expressing autoimmune regulator

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1. scibot 21 May 2022
  
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  DOI: 10.7554/eLife.73998
  
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elifesciences.org/articles/73998
Jan 2022
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Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential

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1. scibot 12 Jan 2022
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.celrep.2021.110234
  
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sciencedirect.com/science/article/pii/S2211124721017435
Sep 2021
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Follicular dendritic cells restrict interleukin-4 availability in germinal centers and foster memory B cell generation

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1. scibot 23 Sep 2021
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.immuni.2021.08.028
  
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sciencedirect.com/science/article/pii/S1074761321003629
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Visualization of individual cell division history in complex tissues using iCOUNT

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1. scibot 15 Sep 2021
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.stem.2021.08.012
  
  Resource: Velocyto (RRID:SCR_018167)
  
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sciencedirect.com/science/article/pii/S1934590921003490
Aug 2021
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Single-cell RNA analysis identifies pre-migratory neural crest cells expressing markers of differentiated derivatives

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1. scibot 21 Aug 2021
  
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  RRID:SCR_018167
  
  DOI: 10.7554/eLife.66078
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8367380/
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Murine muscle stem cell response to perturbations of the neuromuscular junction are attenuated with aging

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1. scibot 19 Aug 2021
  
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  RRID:SCR_018167
  
  DOI: 10.7554/eLife.66749
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8360658/
Jun 2021
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Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart

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1. scibot 26 Jun 2021
  
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  DOI: 10.7554/eLife.65921
  
  Resource: Velocyto (RRID:SCR_018167)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8216715/
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Phenotypic plasticity underlies local invasion and distant metastasis in colon cancer

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1. scibot 17 Jun 2021
  
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  RRID:SCR_018167
  
  DOI: 10.7554/eLife.61461
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8192123/
Apr 2021
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Cascade diversification directs generation of neuronal diversity in the hypothalamus

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1. scibot 22 Apr 2021
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.stem.2021.03.020
  
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  RRIDCUR:Validated RRID:SCR_018167
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sciencedirect.com/science/article/pii/S1934590921001533
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Early stem cell aging in the mature brain

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1. scibot 13 Apr 2021
  
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  DOI: 10.1016/j.stem.2021.03.018
  
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sciencedirect.com/science/article/pii/S1934590921001247
Sep 2020
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SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks

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1. scibot 26 Sep 2020
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.cels.2020.08.003
  
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sciencedirect.com/science/article/pii/S2405471220302878
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Radiation Triggers a Dynamic Sequence of Transient Microglial Alterations in Juvenile Brain

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1. scibot 12 Sep 2020
  
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  RRID:SCR_018167
  
  DOI: 10.1016/j.celrep.2020.107699
  
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  Curator: @ethanbadger
  
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sciencedirect.com/science/article/pii/S2211124720306690