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38 Matching Annotations

Sep 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Protocol for analyzing slow cortical dynamics in mouse neuronal recordings

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1. scibot 09 Sep 2026
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2026.104804
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13544393/
Aug 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Protocol for untargeted LC-MS/MS metabolomics annotation and differential abundance analysis using the SIRIUS Python client

1
1. scibot 22 Aug 2026
  
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  SCR_018317
  
  DOI: 10.1016/j.xpro.2026.104771
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13485645/
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Milk osteopontin alters the infant microbiome to drive DC hematopoiesis and disease tolerance

1
1. scibot 04 Aug 2026
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.cell.2026.07.022
  
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sciencedirect.com/science/article/pii/S0092867426008202
Apr 2026
www.biorxiv.org www.biorxiv.org

Mutant KRAS promotes NF-κB driven CCL20 chemokine expression in pancreatic ductal adenocarcinoma

1
1. scibot 24 Apr 2026
  
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  DOI: 10.64898/2026.04.13.717530
  
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biorxiv.org/content/10.64898/2026.04.13.717530v1
Feb 2026
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Metabolic reprogramming regulates histone lactylation during zebrafish caudal fin regeneration

1
1. scibot 12 Feb 2026
  
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  DOI: 10.1016/j.isci.2026.114792
  
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sciencedirect.com/science/article/pii/S2589004226001677
Dec 2025
www.sciencedirect.com:5037 www.sciencedirect.com:5037

Developmental embedding of parvalbumin-positive interneurons drives local and crosshemispheric prefrontal gamma synchrony

1
1. scibot 09 Dec 2025
  
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  DOI: 10.1016/j.pneurobio.2025.102866
  
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sciencedirect.com:5037/science/article/pii/S0301008225001571
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment method

1
1. scibot 16 Nov 2024
  
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  RRID:SCR_018317
  
  DOI: 10.46471/gigabyte.141
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11558659/
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SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds

1
1. scibot 07 Nov 2024
  
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  RRID:SCR_018317
  
  DOI: 10.46471/gigabyte.139
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11519891/
Oct 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis

1
1. scibot 06 Oct 2024
  
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  RRID:SCR_018317
  
  DOI: 10.46471/gigabyte.132
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11448241/
Sep 2024
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Protocol to analyze 1D and 2D mass spectrometry data from glioblastoma tissues for cancer diagnosis and immune cell identification

1
1. scibot 10 Sep 2024
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2024.103285
  
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sciencedirect.com/science/article/pii/S2666166724004507
Aug 2024
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Protocol for hybrid structured-light three-dimensional scanning and modeling of human postmortem brains

1
1. scibot 22 Aug 2024
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2024.103246
  
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sciencedirect.com/science/article/pii/S2666166724004118
Jul 2024
52.53.155.43 52.53.155.43

Kv2 channels do not function as canonical delayed rectifiers in spinal motoneurons

1
1. scibot 18 Jul 2024
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.isci.2024.110444
  
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52.53.155.43/57b93724ed58bb99655ecac3374a37ea7bdc3d90/1-s2.0-S2589004224016699-main-html.html
Jun 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome

1
1. scibot 22 Jun 2024
  
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  RRID:SCR_018317
  
  DOI: 10.1093/gigascience/giae028
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
May 2024
52.53.155.43 52.53.155.43

Open-Source Platform for Kinematic Analysis of Mouse Forelimb Movement

1
1. scibot 10 May 2024
  
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  RRID:SCR_018317
  
  DOI: 10.1101/2024.01.31.578239
  
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52.53.155.43/2a64c3be31c0f8b3e8ae74c84b5b10ac8b3f7fbc/2024.01.31.578239v3.full-html.html
Apr 2024
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ER-associated degradation adapter Sel1L is required for CD8+ T cell function and memory formation following acute viral infection

1
1. scibot 30 Apr 2024
  
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  Conda 4.12.0AnacondaRRID:SCR_018317
  
  DOI: 10.1016/j.celrep.2024.114156
  
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sciencedirect.com/science/article/pii/S2211124724004844
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Snakemake workflows for long-read bacterial genome assembly and evaluation

1
1. scibot 10 Apr 2024
  
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  RRID:SCR_018317
  
  DOI: 10.46471/gigabyte.116
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
Dec 2023
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Molecular organization of neuronal cell types and neuromodulatory systems in the zebrafish telencephalon

1
1. scibot 29 Dec 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.cub.2023.12.003
  
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sciencedirect.com/science/article/pii/S0960982223016585
Nov 2023
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Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation

1
1. scibot 28 Nov 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.neuron.2023.10.024
  
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sciencedirect.com/science/article/pii/S089662732300805X
Oct 2023
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Protocol to implement a computational pipeline for biomedical discovery based on a biomedical knowledge graph

1
1. scibot 28 Oct 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2023.102666
  
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sciencedirect.com/science/article/pii/S2666166723006330
link.springer.com link.springer.com

A spatio-temporal image analysis for growth of indeterminate pulmonary nodules detected by CT scan

1
1. scibot 28 Oct 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1007/s12194-023-00750-1
  
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link.springer.com/article/10.1007/s12194-023-00750-1
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis

1
1. scibot 14 Oct 2023
  
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  RRID:SCR_018317
  
  DOI: 10.12688/wellcomeopenres.19453.1
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10565428/
Sep 2023
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Olfactory bulb activity shapes the development of entorhinal-hippocampal coupling and associated cognitive abilities

1
1. scibot 30 Sep 2023
  
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  DOI: 10.1016/j.cub.2023.08.072
  
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sciencedirect.com/science/article/pii/S0960982223011521
May 2023
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Amplified cortical neural responses as animals learn to use novel activity patterns

1
1. scibot 06 May 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.cub.2023.04.032
  
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sciencedirect.com/science/article/pii/S0960982223004803
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Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation

1
1. scibot 04 May 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2023.102263
  
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sciencedirect.com/science/article/pii/S2666166723002216
Mar 2023
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Deep texture representation analysis for histopathological images

1
1. scibot 28 Mar 2023
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2023.102161
  
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sciencedirect.com/science/article/pii/S2666166723001193
Jan 2023
52.53.155.43 52.53.155.43

Machine learning model to predict endophytic colonisation of rice cultivar plant tissues by Beauveria bassiana isolates and their potential as bio-control agents against rice stem borer using existing knowledge

1
1. scibot 05 Jan 2023
  
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  RRID:SCR_018317
  
  DOI: 10.12688/f1000research.126479.1
  
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52.53.155.43/0a5e1365bc7a421e8621daf0afa5823b54ba5ae9/ffa4715f-91e7-4229-a7ed-0c9a7368423a_126479_-_mireille_merlise_megnidio-tchoukouegno-html.html
Oct 2022
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A statistical learning protocol to resolve the morphological complexity of two-dimensional macromolecules

1
1. scibot 13 Oct 2022
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.xpro.2022.101767
  
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sciencedirect.com/science/article/pii/S2666166722006475
Feb 2022
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TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets

1
1. scibot 16 Feb 2022
  
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  DOI: 10.1016/j.xpro.2022.101175
  
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sciencedirect.com/science/article/pii/S2666166722000557
Jan 2022
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Unique spatiotemporal fMRI dynamics in the awake mouse brain

1
1. scibot 08 Jan 2022
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.cub.2021.12.015
  
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sciencedirect.com/science/article/pii/S0960982221016912
Oct 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The “Narratives” fMRI dataset for evaluating models of naturalistic language comprehension

1
1. scibot 11 Oct 2021
  
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  RRID:SCR_018317
  
  DOI: 10.1038/s41597-021-01033-3
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8479122/
Aug 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Pupal behavior emerges from unstructured muscle activity in response to neuromodulation in Drosophila

1
1. scibot 07 Aug 2021
  
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  RRID:SCR_018317
  
  DOI: 10.7554/eLife.68656
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8331185/
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

BIGwas: Single-command quality control and association testing for multi-cohort and biobank-scale GWAS/PheWAS data

1
1. scibot 01 Jul 2021
  
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  DOI: 10.1093/gigascience/giab047
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8239664/
Jun 2021
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CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping

1
1. scibot 22 Jun 2021
  
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  RRID:SCR_018317
  
  DOI: 10.1016/j.crmeth.2021.100038
  
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sciencedirect.com/science/article/pii/S2667237521000837
May 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Perturbation of amygdala-cortical projections reduces ensemble coherence of palatability coding in gustatory cortex

1
1. scibot 27 May 2021
  
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  RRID:SCR_018317
  
  DOI: 10.7554/eLife.65766
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8139825/
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Periphery signals generated by Piezo-mediated stomach stretch and Neuromedin-mediated glucose load regulate the Drosophila brain nutrient sensor

1
1. scibot 20 May 2021
  
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  DOI: 10.1016/j.neuron.2021.04.028
  
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URL

ncbi.nlm.nih.gov/pmc/articles/PMC8611812/
Sep 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Recommendations to enhance rigor and reproducibility in biomedical research

1
1. scibot 23 Sep 2020
  
  in Public
  
  RRID:SCR_018317
  
  DOI: 10.1093/gigascience/giaa056
  
  Resource: Conda (RRID:SCR_018317)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_018317
  
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  RRID:SCR_018317 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_018317

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC7263079/
elifesciences.org elifesciences.org

An image-based data-driven analysis of cellular architecture in a developing tissue

1
1. scibot 17 Sep 2020
  
  in Public
  
  RRID:SCR_018317
  
  DOI: 10.7554/eLife.55913
  
  Resource: Conda (RRID:SCR_018317)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_018317
  
  What is this?
  
  RRID:SCR_018317 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_018317

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scibot

URL

elifesciences.org/articles/55913
academic.oup.com academic.oup.com

Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution

1
1. scibot 12 Sep 2020
  
  in Public
  
  RRID:SCR_018317
  
  DOI: 10.1093/gigascience/giaa068
  
  Resource: Conda (RRID:SCR_018317)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_018317
  
  What is this?
  
  RRID:SCR_018317 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:SCR_018317

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scibot

URL

academic.oup.com/gigascience/article/9/6/giaa068/5858407