32 Matching Annotations
  1. Nov 2024
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment method
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    1. scibot 16 Nov 2024
      RRID:SCR_018317

      DOI: 10.46471/gigabyte.141

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    pmc.ncbi.nlm.nih.gov/articles/PMC11558659/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds
    1
    1. scibot 07 Nov 2024
      RRID:SCR_018317

      DOI: 10.46471/gigabyte.139

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    pmc.ncbi.nlm.nih.gov/articles/PMC11519891/
  4. Oct 2024
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
    1
    1. scibot 06 Oct 2024
      RRID:SCR_018317

      DOI: 10.46471/gigabyte.132

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    ncbi.nlm.nih.gov/pmc/articles/PMC11448241/
  6. Sep 2024
  7. www.sciencedirect.com www.sciencedirect.com
    Protocol to analyze 1D and 2D mass spectrometry data from glioblastoma tissues for cancer diagnosis and immune cell identification
    1
    1. scibot 10 Sep 2024
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2024.103285

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    sciencedirect.com/science/article/pii/S2666166724004507
  8. Aug 2024
  9. www.sciencedirect.com www.sciencedirect.com
    Protocol for hybrid structured-light three-dimensional scanning and modeling of human postmortem brains
    1
    1. scibot 22 Aug 2024
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2024.103246

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    sciencedirect.com/science/article/pii/S2666166724004118
  10. Jul 2024
  11. 52.53.155.43 52.53.155.43
    Kv2 channels do not function as canonical delayed rectifiers in spinal motoneurons
    1
    1. scibot 18 Jul 2024
      RRID:SCR_018317

      DOI: 10.1016/j.isci.2024.110444

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    52.53.155.43/57b93724ed58bb99655ecac3374a37ea7bdc3d90/1-s2.0-S2589004224016699-main-html.html
  12. Jun 2024
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome
    1
    1. scibot 22 Jun 2024
      RRID:SCR_018317

      DOI: 10.1093/gigascience/giae028

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    ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
  14. May 2024
  15. 52.53.155.43 52.53.155.43
    Open-Source Platform for Kinematic Analysis of Mouse Forelimb Movement
    1
    1. scibot 10 May 2024
      RRID:SCR_018317

      DOI: 10.1101/2024.01.31.578239

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    52.53.155.43/2a64c3be31c0f8b3e8ae74c84b5b10ac8b3f7fbc/2024.01.31.578239v3.full-html.html
  16. Apr 2024
  17. www.sciencedirect.com www.sciencedirect.com
    ER-associated degradation adapter Sel1L is required for CD8+ T cell function and memory formation following acute viral infection
    1
    1. scibot 30 Apr 2024
      Conda 4.12.0AnacondaRRID:SCR_018317

      DOI: 10.1016/j.celrep.2024.114156

      Resource: Conda (RRID:SCR_018317)

      Curator: @abever99

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    sciencedirect.com/science/article/pii/S2211124724004844
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Snakemake workflows for long-read bacterial genome assembly and evaluation
    1
    1. scibot 10 Apr 2024
      RRID:SCR_018317

      DOI: 10.46471/gigabyte.116

      Resource: Conda (RRID:SCR_018317)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
  19. Dec 2023
  20. www.sciencedirect.com www.sciencedirect.com
    Molecular organization of neuronal cell types and neuromodulatory systems in the zebrafish telencephalon
    1
    1. scibot 29 Dec 2023
      RRID:SCR_018317

      DOI: 10.1016/j.cub.2023.12.003

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    sciencedirect.com/science/article/pii/S0960982223016585
  21. Nov 2023
  22. www.sciencedirect.com www.sciencedirect.com
    Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation
    1
    1. scibot 28 Nov 2023
      RRID:SCR_018317

      DOI: 10.1016/j.neuron.2023.10.024

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    sciencedirect.com/science/article/pii/S089662732300805X
  23. Oct 2023
  24. www.sciencedirect.com www.sciencedirect.com
    Protocol to implement a computational pipeline for biomedical discovery based on a biomedical knowledge graph
    1
    1. scibot 28 Oct 2023
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2023.102666

      Resource: Conda (RRID:SCR_018317)

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    sciencedirect.com/science/article/pii/S2666166723006330
  25. link.springer.com link.springer.com
    A spatio-temporal image analysis for growth of indeterminate pulmonary nodules detected by CT scan
    1
    1. scibot 28 Oct 2023
      RRID:SCR_018317

      DOI: 10.1007/s12194-023-00750-1

      Resource: Conda (RRID:SCR_018317)

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    link.springer.com/article/10.1007/s12194-023-00750-1
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis
    1
    1. scibot 14 Oct 2023
      RRID:SCR_018317

      DOI: 10.12688/wellcomeopenres.19453.1

      Resource: Conda (RRID:SCR_018317)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10565428/
  27. Sep 2023
  28. www.sciencedirect.com www.sciencedirect.com
    Olfactory bulb activity shapes the development of entorhinal-hippocampal coupling and associated cognitive abilities
    1
    1. scibot 30 Sep 2023
      RRID:SCR_018317

      DOI: 10.1016/j.cub.2023.08.072

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    sciencedirect.com/science/article/pii/S0960982223011521
  29. May 2023
  30. www.sciencedirect.com www.sciencedirect.com
    Amplified cortical neural responses as animals learn to use novel activity patterns
    1
    1. scibot 06 May 2023
      RRID:SCR_018317

      DOI: 10.1016/j.cub.2023.04.032

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    sciencedirect.com/science/article/pii/S0960982223004803
  31. www.sciencedirect.com www.sciencedirect.com
    Examining asymmetric pairwise pre-reaction and transition states in enzymatic catalysis by molecular dynamics simulation and quantum mechanics/molecular mechanics calculation
    1
    1. scibot 04 May 2023
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2023.102263

      Resource: Conda (RRID:SCR_018317)

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    sciencedirect.com/science/article/pii/S2666166723002216
  32. Mar 2023
  33. www.sciencedirect.com www.sciencedirect.com
    Deep texture representation analysis for histopathological images
    1
    1. scibot 28 Mar 2023
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2023.102161

      Resource: Conda (RRID:SCR_018317)

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    sciencedirect.com/science/article/pii/S2666166723001193
  34. Jan 2023
  35. 52.53.155.43 52.53.155.43
    Machine learning model to predict endophytic colonisation of rice cultivar plant tissues by Beauveria bassiana isolates and their potential as bio-control agents against rice stem borer using existing knowledge
    1
    1. scibot 05 Jan 2023
      RRID:SCR_018317

      DOI: 10.12688/f1000research.126479.1

      Resource: Conda (RRID:SCR_018317)

      Curator: @sofiakhan13

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    52.53.155.43/0a5e1365bc7a421e8621daf0afa5823b54ba5ae9/ffa4715f-91e7-4229-a7ed-0c9a7368423a_126479_-_mireille_merlise_megnidio-tchoukouegno-html.html
  36. Oct 2022
  37. www.sciencedirect.com www.sciencedirect.com
    A statistical learning protocol to resolve the morphological complexity of two-dimensional macromolecules
    1
    1. scibot 13 Oct 2022
      RRID:SCR_018317

      DOI: 10.1016/j.xpro.2022.101767

      Resource: Conda (RRID:SCR_018317)

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    sciencedirect.com/science/article/pii/S2666166722006475
  38. Feb 2022
  39. www.sciencedirect.com www.sciencedirect.com
    TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets
    1
    1. scibot 16 Feb 2022
      SCR_018317

      DOI: 10.1016/j.xpro.2022.101175

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    sciencedirect.com/science/article/pii/S2666166722000557
  40. Jan 2022
  41. www.sciencedirect.com www.sciencedirect.com
    Unique spatiotemporal fMRI dynamics in the awake mouse brain
    1
    1. scibot 08 Jan 2022
      RRID:SCR_018317

      DOI: 10.1016/j.cub.2021.12.015

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    sciencedirect.com/science/article/pii/S0960982221016912
  42. Oct 2021
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The “Narratives” fMRI dataset for evaluating models of naturalistic language comprehension
    1
    1. scibot 11 Oct 2021
      RRID:SCR_018317

      DOI: 10.1038/s41597-021-01033-3

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    ncbi.nlm.nih.gov/pmc/articles/PMC8479122/
  44. Aug 2021
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pupal behavior emerges from unstructured muscle activity in response to neuromodulation in Drosophila
    1
    1. scibot 07 Aug 2021
      RRID:SCR_018317

      DOI: 10.7554/eLife.68656

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    ncbi.nlm.nih.gov/pmc/articles/PMC8331185/
  46. Jul 2021
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BIGwas: Single-command quality control and association testing for multi-cohort and biobank-scale GWAS/PheWAS data
    1
    1. scibot 01 Jul 2021
      RRID:SCR_018317

      DOI: 10.1093/gigascience/giab047

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    ncbi.nlm.nih.gov/pmc/articles/PMC8239664/
  48. Jun 2021
  49. www.sciencedirect.com www.sciencedirect.com
    CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping
    1
    1. scibot 22 Jun 2021
      RRID:SCR_018317

      DOI: 10.1016/j.crmeth.2021.100038

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    sciencedirect.com/science/article/pii/S2667237521000837
  50. May 2021
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Perturbation of amygdala-cortical projections reduces ensemble coherence of palatability coding in gustatory cortex
    1
    1. scibot 27 May 2021
      RRID:SCR_018317

      DOI: 10.7554/eLife.65766

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    ncbi.nlm.nih.gov/pmc/articles/PMC8139825/
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Periphery signals generated by Piezo-mediated stomach stretch and Neuromedin-mediated glucose load regulate the Drosophila brain nutrient sensor
    1
    1. scibot 20 May 2021
      RRID:SCR_018317

      DOI: 10.1016/j.neuron.2021.04.028

      Resource: Conda (RRID:SCR_018317)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8611812/
  53. Sep 2020
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Recommendations to enhance rigor and reproducibility in biomedical research
    1
    1. scibot 23 Sep 2020
      RRID:SCR_018317

      DOI: 10.1093/gigascience/giaa056

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC7263079/
  55. elifesciences.org elifesciences.org
    An image-based data-driven analysis of cellular architecture in a developing tissue
    1
    1. scibot 17 Sep 2020
      RRID:SCR_018317

      DOI: 10.7554/eLife.55913

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      Curator: @Naa003

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    elifesciences.org/articles/55913
  56. academic.oup.com academic.oup.com
    Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
    1
    1. scibot 12 Sep 2020
      RRID:SCR_018317

      DOI: 10.1093/gigascience/giaa068

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    academic.oup.com/gigascience/article/9/6/giaa068/5858407