107 Matching Annotations
  1. Last 7 days
  2. www.biorxiv.org www.biorxiv.org
    PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
    1
    1. scibot 16 Jul 2024
      RRID:SCR_018550

      DOI: 10.1101/2024.06.26.600753

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    biorxiv.org/content/10.1101/2024.06.26.600753v1
  3. www.cell.com www.cell.com
    Maternal gestational diabetes mellitus associates with altered gut microbiome composition and head circumference abnormalities in male offspring
    1
    1. scibot 16 Jul 2024
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      DOI: 10.1016/j.chom.2024.06.005

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    cell.com/cell-host-microbe/abstract/S1931-3128(24)00223-3
  4. Jul 2024
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce
    1
    1. scibot 14 Jul 2024
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giae043

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    ncbi.nlm.nih.gov/pmc/articles/PMC11238431/
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis
    1
    1. scibot 07 Jul 2024
      RRID:SCR_018550

      DOI: 10.46471/gigabyte.129

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    ncbi.nlm.nih.gov/pmc/articles/PMC11221353/
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1
    1
    1. scibot 02 Jul 2024
      RRID:SCR_018550

      DOI: 10.1126/sciadv.adk1296

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    ncbi.nlm.nih.gov/pmc/articles/PMC11204300/
  8. Jun 2024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis
    1
    1. scibot 22 Jun 2024
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      DOI: 10.1093/gigascience/giae032

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    ncbi.nlm.nih.gov/pmc/articles/PMC11170221/
  10. www.sciencedirect.com www.sciencedirect.com
    Decoupled degradation and translation enables noise modulation by poly(A) tails
    1
    1. scibot 21 Jun 2024
      RRID:SCR_018550

      DOI: 10.1016/j.cels.2024.05.004

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    sciencedirect.com/science/article/pii/S2405471224001480
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Uncovering strain- and age-dependent innate immune responses to SARS-CoV-2 infection in air-liquid-interface cultured nasal epithelia
    1
    1. scibot 14 Jun 2024
      RRID:SCR_018550

      DOI: 10.1016/j.isci.2024.110009

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    ncbi.nlm.nih.gov/pmc/articles/PMC11166695/
  12. www.biorxiv.org www.biorxiv.org
    Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis
    1
    1. scibot 09 Jun 2024
      RRID:SCR_018550

      DOI: 10.1101/2023.04.06.535889

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    biorxiv.org/content/10.1101/2023.04.06.535889v2
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
    1. scibot 08 Jun 2024
      RRID:SCR_018550

      DOI: 10.1093/g3journal/jkae021

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    ncbi.nlm.nih.gov/pmc/articles/PMC11152071/
  14. May 2024
  15. www.sciencedirect.com www.sciencedirect.com
    Reciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae
    3
    1. scibot 30 May 2024
      RRID:SCR_018550

      DOI: 10.1016/j.cell.2024.04.047

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    2. scibot 30 May 2024
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      DOI: 10.1016/j.cell.2024.04.047

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    3. scibot 30 May 2024
      RRID:SCR_018550

      DOI: 10.1016/j.cell.2024.04.047

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    sciencedirect.com/science/article/pii/S0092867424004732
  16. www.biorxiv.org www.biorxiv.org
    A first look at the genome structure of hexaploid ‘Black Mitcham’ peppermint (Mentha piperita L.)
    2
    1. scibot 29 May 2024
      RRID:SCR_018550

      DOI: 10.1101/2024.03.15.585188

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    2. scibot 29 May 2024
      RRID:SCR_018550

      DOI: 10.1101/2024.03.15.585188

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    biorxiv.org/content/10.1101/2024.03.15.585188v1
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
    1. scibot 08 May 2024
      RRID:SCR_018550

      DOI: 10.46471/gigabyte.123

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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  18. Apr 2024
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data
    1
    1. scibot 10 Apr 2024
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giae010

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    ncbi.nlm.nih.gov/pmc/articles/PMC10993716/
  20. Mar 2024
  21. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
    1
    1. scibot 27 Mar 2024
      RRID:SCR_018550

      DOI: 10.1016/j.fsi.2024.109505

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    sciencedirect.com/science/article/pii/S1050464824001499
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptome-informed identification and characterisation of Planococcus citri cis- and trans-isoprenyl diphosphate synthase genes
    1
    1. scibot 27 Mar 2024
      RRID:SCR_018550

      DOI: 10.1016/j.isci.2024.109441

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    ncbi.nlm.nih.gov/pmc/articles/PMC10960109/
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
    1
    1. scibot 19 Mar 2024
      RRID:SCR_018550

      DOI: 10.46471/gigabyte.112

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    ncbi.nlm.nih.gov/pmc/articles/PMC10940895/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes)
    1
    1. scibot 16 Mar 2024
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giae006

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    ncbi.nlm.nih.gov/pmc/articles/PMC10938897/
  25. www.sciencedirect.com www.sciencedirect.com
    A simple method for rapid cloning of complete herpesvirus genomes
    1
    1. scibot 06 Mar 2024
      RRID:SCR_018550

      DOI: 10.1016/j.crmeth.2024.100696

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      Curator: @abever99

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    sciencedirect.com/science/article/pii/S266723752400002X
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma
    1
    1. scibot 06 Mar 2024
      RRID:SCR_018550

      DOI: 10.1158/2767-9764.CRC-23-0341

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    ncbi.nlm.nih.gov/pmc/articles/PMC10911800/
  27. Feb 2024
  28. www.sciencedirect.com www.sciencedirect.com
    Single-cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, aging, and disease
    1
    1. scibot 22 Feb 2024
      RRID:SCR_018550

      DOI: 10.1016/j.celrep.2024.113784

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    sciencedirect.com/science/article/pii/S2211124724001128
  29. dx.doi.org dx.doi.org
    Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays
    1
    1. scibot 08 Feb 2024
      RRID:SCR_018550

      DOI: 10.1093/g3journal/jkad292

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    dx.doi.org/10.1093/g3journal/jkad292
  30. www.sciencedirect.com www.sciencedirect.com
    CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs
    1
    1. scibot 02 Feb 2024
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      DOI: 10.1016/j.molcel.2024.01.006

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    sciencedirect.com/science/article/pii/S1097276524000078
  31. Jan 2024
  32. link.springer.com link.springer.com
    Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia
    1
    1. scibot 25 Jan 2024
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      DOI: 10.1007/s11262-023-02048-1

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    link.springer.com/article/10.1007/s11262-023-02048-1
  33. movementdisorders.onlinelibrary.wiley.com movementdisorders.onlinelibrary.wiley.com
    Adaptive Long-Read Sequencing Reveals GGC Repeat Expansion in ZFHX3 Associated with Spinocerebellar Ataxia Type 4
    1
    1. scibot 18 Jan 2024
      RRID:SCR_018550

      DOI: 10.1002/mds.29704

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    movementdisorders.onlinelibrary.wiley.com/doi/10.1002/mds.29704
  34. dx.doi.org dx.doi.org
    Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data
    1
    1. scibot 11 Jan 2024
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giad117

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    dx.doi.org/10.1093/gigascience/giad117
  35. Dec 2023
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nanopore adaptive sampling enriches for antimicrobial resistance genes in microbial communities
    1
    1. scibot 20 Dec 2023
      RRID:SCR_018550

      DOI: 10.46471/gigabyte.103

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    ncbi.nlm.nih.gov/pmc/articles/PMC10726737/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
    1
    1. scibot 16 Dec 2023
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giad102

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    ncbi.nlm.nih.gov/pmc/articles/PMC10720953/
  38. Nov 2023
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
    1. scibot 30 Nov 2023
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giad100

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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
    1
    1. scibot 26 Nov 2023
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      DOI: 10.46471/gigabyte.98

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    ncbi.nlm.nih.gov/pmc/articles/PMC10659084/
  41. www.science.org www.science.org
    LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 17 Nov 2023
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      DOI: 10.1126/sciadv.adh9543

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    science.org/doi/10.1126/sciadv.adh9543
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 03 Nov 2023
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      DOI: 10.1126/sciadv.adh9543

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    ncbi.nlm.nih.gov/pmc/articles/PMC10619931/
  43. Oct 2023
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the venomous snail Kalloconus canariensis: a valuable model for venomics and comparative genomics
    1
    1. scibot 05 Oct 2023
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giad075

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    ncbi.nlm.nih.gov/pmc/articles/PMC10541794/
  45. Sep 2023
  46. www.biorxiv.org www.biorxiv.org
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
    1. scibot 30 Sep 2023
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      DOI: 10.1101/2023.09.21.558899

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    biorxiv.org/content/10.1101/2023.09.21.558899v1
  47. www.sciencedirect.com www.sciencedirect.com
    Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths
    1
    1. scibot 29 Sep 2023
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      DOI: 10.1016/j.stem.2023.07.012

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    sciencedirect.com/science/article/pii/S1934590923002576
  48. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
    1
    1. scibot 27 Sep 2023
      RRID:SCR_018550

      DOI: 10.1016/j.ijbiomac.2023.125908

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    sciencedirect.com/science/article/pii/S0141813023028039
  49. 52.53.155.43 52.53.155.43
    jkad203-html.html
    1
    1. scibot 22 Sep 2023
      RRID:SCR_018550

      DOI: 10.1093/g3journal/jkad203

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    52.53.155.43/213eef494e744243d5c25ee25ef9fbca7c526326/jkad203-html.html
  50. Aug 2023
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
    1. scibot 29 Aug 2023
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      DOI: 10.1093/gigascience/giad064

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  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MHC Class II is Induced by IFNγ and Follows Three Distinct Patterns of Expression in Colorectal Cancer Organoids
    1
    1. scibot 12 Aug 2023
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      DOI: 10.1158/2767-9764.CRC-23-0091

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    ncbi.nlm.nih.gov/pmc/articles/PMC10411481/
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inhibition of DNMT1 methyltransferase activity via glucose-regulated O-GlcNAcylation alters the epigenome
    1
    1. scibot 02 Aug 2023
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      DOI: 10.7554/eLife.85595

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    ncbi.nlm.nih.gov/pmc/articles/PMC10390045/
  54. Jul 2023
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees
    1
    1. scibot 27 Jul 2023
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      DOI: 10.1093/gigascience/giad056

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    ncbi.nlm.nih.gov/pmc/articles/PMC10367126/
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
    1
    1. scibot 06 Jul 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC10318349/
  58. May 2023
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
    1
    1. scibot 16 May 2023
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      DOI: 10.1093/gigascience/giad034

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  60. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
    1
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      DOI: 10.1093/g3journal/jkad090

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    academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkad090/7147210
  61. www.biorxiv.org www.biorxiv.org
    L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
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      DOI: 10.1101/2023.03.04.531072

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    biorxiv.org/content/10.1101/2023.03.04.531072v1
  62. Apr 2023
  63. www.biorxiv.org www.biorxiv.org
    Single cell spatial transcriptomic and translatomic profiling of dopaminergic neurons in health, ageing and disease
    1
    1. scibot 27 Apr 2023
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      DOI: 10.1101/2023.04.20.537553

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  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
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    ncbi.nlm.nih.gov/pmc/articles/PMC10087013/
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration
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      DOI: 10.1158/2159-8290.CD-22-0900

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  66. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
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      DOI: 10.1093/jhered/esad015

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  67. Mar 2023
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
    1
    1. scibot 22 Mar 2023
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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nanopore-based enrichment of antimicrobial resistance genes – a case-based study
    1
    1. scibot 22 Mar 2023
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      DOI: 10.46471/gigabyte.75

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027057/
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
    1
    1. scibot 22 Mar 2023
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      DOI: 10.46471/gigabyte.71

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    ncbi.nlm.nih.gov/pmc/articles/PMC10027117/
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new and improved genome sequence of Cannabis sativa
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    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.10

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    ncbi.nlm.nih.gov/pmc/articles/PMC9632002/
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species
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      DOI: 10.46471/gigabyte.42

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650271/
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
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      DOI: 10.46471/gigabyte.34

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of the mustard hill coral, Porites astreoides
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693771/
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
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      DOI: 10.46471/gigabyte.40

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
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  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
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      DOI: 10.46471/gigabyte.28

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693786/
  79. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
    1. scibot 02 Mar 2023
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      DOI: 10.1093/jhered/esad003

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  80. Feb 2023
  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
    1
    1. scibot 16 Feb 2023
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      DOI: 10.1093/gigascience/giad002

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    ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Expansion and loss of sperm nuclear basic protein genes in Drosophila correspond with genetic conflicts between sex chromosomes
    1
    1. scibot 15 Feb 2023
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      DOI: 10.7554/eLife.85249

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    ncbi.nlm.nih.gov/pmc/articles/PMC9917458/
  83. Jan 2023
  84. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
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    1. scibot 31 Jan 2023
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      DOI: 10.1038/s41598-022-25078-5

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    nature.com/articles/s41598-022-25078-5
  85. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
    1
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      DOI: 10.1101/2023.01.10.523438

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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  86. Dec 2022
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
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      DOI: 10.1093/gigascience/giac112

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    ncbi.nlm.nih.gov/pmc/articles/PMC9795480/
  88. Nov 2022
  89. academic.oup.com academic.oup.com
    Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads
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      DOI: 10.1093/gigascience/giac116

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac116/6833030
  90. Oct 2022
  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BOA: A partitioned view of genome assembly
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      DOI: 10.1016/j.isci.2022.105273

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    ncbi.nlm.nih.gov/pmc/articles/PMC9593263/
  92. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
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      DOI: 10.1093/gigascience/giac090

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  93. Sep 2022
  94. academic.oup.com academic.oup.com
    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
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      DOI: 10.1093/gigascience/giac085

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac085/6700067
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella
    1
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      DOI: 10.1016/j.isci.2022.104974

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    ncbi.nlm.nih.gov/pmc/articles/PMC9450145/
  96. Aug 2022
  97. www.sciencedirect.com www.sciencedirect.com
    The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants
    1
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      DOI: 10.1016/j.celrep.2022.111236

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    sciencedirect.com/science/article/pii/S2211124722010531
  98. Jul 2022
  99. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
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      DOI: 10.1093/jhered/esac033

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  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies
    1
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      DOI: 10.1093/gigascience/giac070

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    ncbi.nlm.nih.gov/pmc/articles/PMC9270728/
  101. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
    1
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      DOI: 10.1093/gigascience/giac059

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
  102. academic.oup.com academic.oup.com
    Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
    1
    1. scibot 06 Jul 2022
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      DOI: 10.1093/gigascience/giac057

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac057/6619298
  103. Jun 2022
  104. www.nature.com www.nature.com
    The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
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      DOI: 10.1038/s41598-022-14893-5

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    nature.com/articles/s41598-022-14893-5
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing
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      DOI: 10.3389/fgene.2022.867018

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    ncbi.nlm.nih.gov/pmc/articles/PMC9195511/
  106. May 2022
  107. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
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    1. scibot 10 May 2022
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      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
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    1. scibot 04 May 2022
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      DOI: 10.1093/gigascience/giac027

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    ncbi.nlm.nih.gov/pmc/articles/PMC9055855/
  109. Mar 2022
  110. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
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    1. scibot 31 Mar 2022
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      DOI: 10.1093/gigascience/giac028

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952263/
  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
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      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
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    1. scibot 31 Mar 2022
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      DOI: 10.1093/gigascience/giac025

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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/
  113. elifesciences.org elifesciences.org
    A genetic compensatory mechanism regulated by Jun and Mef2d modulates the expression of distinct class IIa Hdacs to ensure peripheral nerve myelination and repair
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      DOI: 10.7554/eLife.72917

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  114. Feb 2022
  115. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates granzyme A and other knockout mouse studies
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      DOI: 10.7554/eLife.70207

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      DOI: 10.7554/eLife.70207

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    ncbi.nlm.nih.gov/pmc/articles/PMC8816380/
  116. Jan 2022
  117. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
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    1. scibot 15 Jan 2022
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      DOI: 10.1093/gigascience/giab089

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  118. Dec 2021
  119. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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      DOI: 10.1093/gigascience/giab081

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    ncbi.nlm.nih.gov/pmc/articles/PMC8685854/
  120. www.sciencedirect.com www.sciencedirect.com
    Anti-recombination function of MutSα restricts telomere extension by ALT-associated homology-directed repair
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      DOI: 10.1016/j.celrep.2021.110088

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    sciencedirect.com/science/article/pii/S2211124721015795
  121. Nov 2021
  122. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sequence features of retrotransposons allow for epigenetic variability
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      DOI: 10.7554/eLife.71104

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    ncbi.nlm.nih.gov/pmc/articles/PMC8555987/
  123. Oct 2021
  124. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants
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      DOI: 10.7554/eLife.68479

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    ncbi.nlm.nih.gov/pmc/articles/PMC8478411/
  125. Sep 2021
  126. www.sciencedirect.com www.sciencedirect.com
    The RNA-binding protein Musashi controls axon compartment-specific synaptic connectivity through ptp69D mRNA poly(A)-tailing
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      DOI: 10.1016/j.celrep.2021.109713

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    sciencedirect.com/science/article/pii/S2211124721011621
  127. May 2021
  128. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
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    1. scibot 27 May 2021
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      DOI: 10.1093/gigascience/giab035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  129. Apr 2021
  130. www.sciencedirect.com www.sciencedirect.com
    Analysis of Brugada syndrome loci reveals that fine-mapping clustered GWAS hits enhances the annotation of disease-relevant variants
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      DOI: 10.1016/j.xcrm.2021.100250

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    sciencedirect.com/science/article/pii/S2666379121000665
  131. www.sciencedirect.com www.sciencedirect.com
    A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes
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      DOI: 10.1016/j.molcel.2021.03.028

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    sciencedirect.com/science/article/pii/S1097276521002239
  132. academic.oup.com academic.oup.com
    A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
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      DOI: 10.1093/gigascience/giab020

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    academic.oup.com/gigascience/article/10/3/giab020/6187865
  133. Mar 2021
  134. academic.oup.com academic.oup.com
    A chromosome‐level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
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    1. scibot 24 Mar 2021
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giab016

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    academic.oup.com/gigascience/article/10/3/giab016/6178709
  135. academic.oup.com academic.oup.com
    Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
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      DOI: 10.1093/gigascience/giab017

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    academic.oup.com/gigascience/article/10/3/giab017/6170950
  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fine Mapping of Leaf Trichome Density Revealed a 747-kb Region on Chromosome 1 in Cold-Hardy Hybrid Wine Grape Populations
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    1. scibot 20 Mar 2021
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      DOI: 10.3389/fpls.2021.587640

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    ncbi.nlm.nih.gov/pmc/articles/PMC7965957/
  137. Dec 2020
  138. academic.oup.com academic.oup.com
    Long-read assembly of the Brassica napus reference genome Darmor-bzh
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    1. scibot 19 Dec 2020
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giaa137

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    academic.oup.com/gigascience/article/9/12/giaa137/6034787
  139. Sep 2020
  140. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Construction of a chromosome-scale long-read reference genome assembly for potato
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    1. scibot 26 Sep 2020
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giaa100

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    pubmed.ncbi.nlm.nih.gov/32964225/
  141. www.cell.com www.cell.com
    Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater
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      DOI: 10.1016/j.xcrm.2020.100098

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    cell.com/cell-reports-medicine/abstract/S2666-3791(20)30124-5
  142. academic.oup.com academic.oup.com
    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
    1
    1. scibot 12 Sep 2020
      RRID:SCR_018550

      DOI: 10.1093/gigascience/giaa094

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    academic.oup.com/gigascience/article/9/9/giaa094/5902284