70 Matching Annotations
  1. Jun 2026
  2. www.sciencedirect.com www.sciencedirect.com
    GRHL and PGR control WNT4 expression via 3D looping of conserved and species-specific enhancers
    1
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    sciencedirect.com/science/article/pii/S2211124726006534
  3. May 2026
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A Conserved Enhancer Locus in Extrachromosomal DNA and Homogeneously Staining Regions Activates MYC Transcription in Group 3 Medulloblastoma
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC13202998/
  5. Apr 2026
  6. www.sciencedirect.com www.sciencedirect.com
    Somatic cancer variants enriched in Alzheimer’s disease microglia-like cells drive inflammatory and proliferative states
    1
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    sciencedirect.com/science/article/pii/S0092867426003417
  7. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Functional genomics reveals key gene families and molecular pathways for extreme cold survival in the khapra beetle
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC13032687/
  8. Mar 2026
  9. dx.doi.org dx.doi.org
    A Chromosome-Level Genome Assembly of the Snow Leopard, Panthera Uncia
    1
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    dx.doi.org/10.1093/jhered/esaf046
  10. Nov 2025
  11. www.sciencedirect.com www.sciencedirect.com
    Circadian PERIOD proteins regulate TC-DSB repair through anchoring to the nuclear envelope
    1
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    sciencedirect.com/science/article/pii/S1097276525008688
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Mapping of chromatin architecture and enhancer-promoter interactions in the cochlea
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12568336/
  13. Oct 2025
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The complete genome assembly of Astragalus membranaceus: enabling more accurate genetic research
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12486382/
  15. Sep 2025
  16. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A telomere-to-telomere genome assembly of koi carp (Cyprinus carpio) using long reads and Hi-C technology
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12395963/
  17. Aug 2025
  18. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12360840/
  19. Jul 2025
  20. dx.doi.org dx.doi.org
    Telomere-to-telomere chromosome-scale genome assemblies of black and golden koi carp variants support construction of an ancient karyotype of Cypriniformes
    1
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    dx.doi.org/10.1093/gigascience/giaf073
  21. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12218201/
  22. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere gapless genome of grass carp provides insights for genetic improvement
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12204074/
  23. Jun 2025
  24. 52.53.155.43 52.53.155.43
    Chromosome-Level genome assembly and transcriptome analysis of the ural owl, Strix uralensis Pallas, 1771
    2
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    52.53.155.43/7dabfbbd9bff9fd118ed366d51d2c9d870afbb9e/PDF-html.html
  25. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the lemon sole, Microstomus kitt (Pleuronectiformes: Pleuronectidae)
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12135936/
  26. May 2025
  27. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A near telomere-to-telomere genome assembly of the Jinhua pig: enabling more accurate genetic research
    2
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    pmc.ncbi.nlm.nih.gov/articles/PMC12080228/
  28. Apr 2025
  29. 52.53.155.43 52.53.155.43
    PDF-html.html
    1
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    52.53.155.43/55258fb7cbb5129b8f6a80aa9ec7947c8b76a265/PDF-html.html
  30. Mar 2025
  31. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Hi-GDT: A Hi-C-based 3D gene domain analysis tool for analyzing local chromatin contacts in plants
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11927400/
  32. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A telomere-to-telomere phased genome of an octoploid strawberry reveals a receptor kinase conferring anthracnose resistance
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11899574/
  33. Feb 2025
  34. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11843098/
  35. Jan 2025
  36. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A chromosome-scale genome assembly of the pioneer plant Stylosanthes angustifolia: insights into genome evolution and drought adaptation
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11758145/
  37. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Polyploid genome assembly of Cardamine chenopodiifolia
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11693932/
  38. Dec 2024
  39. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11590113/
  40. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Construction and analysis of telomere-to-telomere genomes for 2 sweet oranges: Longhuihong and Newhall (Citrus sinensis)
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11590112/
  41. dx.doi.org dx.doi.org
    A first look at the genome structure of hexaploid “Mitcham” peppermint (Mentha × piperita L.)
    1
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    dx.doi.org/10.1093/g3journal/jkae195
  42. Nov 2024
  43. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11489038/
  44. Sep 2024
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11423352/
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Disentangling river and swamp buffalo genetic diversity: initial insights from the 1000 Buffalo Genomes Project
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11382405/
  47. Aug 2024
  48. www.sciencedirect.com www.sciencedirect.com
    Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries
    1
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    sciencedirect.com/science/article/pii/S1097276524006610
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A trade-off in evolution: the adaptive landscape of spiders without venom glands
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  50. Jul 2024
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11238431/
  52. Jun 2024
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11170218/
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11170221/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11152071/
  57. May 2024
  58. www.sciencedirect.com www.sciencedirect.com
    Heterochromatic 3D genome organization is directed by HP1a- and H3K9-dependent and independent mechanisms
    1
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    sciencedirect.com/science/article/pii/S1097276524003952
  59. www.biorxiv.org www.biorxiv.org
    A first look at the genome structure of hexaploid ‘Black Mitcham’ peppermint (Mentha piperita L.)
    2
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    biorxiv.org/content/10.1101/2024.03.15.585188v1
  60. www.biorxiv.org www.biorxiv.org
    Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples
    1
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    biorxiv.org/content/10.1101/2024.05.13.593769v1
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly of the long-spined sea urchin Diadema setosum (Leske, 1778)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11066563/
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  63. Mar 2024
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10940895/
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10904027/
  66. Jan 2024
  67. dx.doi.org dx.doi.org
    The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP)
    1
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    dx.doi.org/10.1093/gigascience/giad110
  68. Dec 2023
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the Pacific geoduck Panopea generosa reveals major inter- and intrachromosomal rearrangements and substantial expansion of the copine gene family
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10729735/
  70. Nov 2023
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10659084/
  72. Oct 2023
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10600911/
  74. Sep 2023
  75. www.biorxiv.org www.biorxiv.org
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
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    biorxiv.org/content/10.1101/2023.09.21.558899v1
  76. Jul 2023
  77. academic.oup.com academic.oup.com
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad051/7227510
  78. May 2023
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10176504/
  80. Apr 2023
  81. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  82. Mar 2023
  83. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10038202/
  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650288/
  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693968/
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly of the common vetch (Vicia sativa) reference genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650280/
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694154/
  88. Feb 2023
  89. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
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    sciencedirect.com/science/article/pii/S0888754323000265
  90. Jan 2023
  91. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
    1
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    biorxiv.org/content/10.1101/2023.01.10.523438v1
  92. Dec 2022
  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9730501/
  94. Nov 2022
  95. academic.oup.com academic.oup.com
    The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac109/6827246
  96. Sep 2022
  97. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
    1
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    academic.oup.com/gbe/article/14/9/evac132/6677079
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 promotes the myelination transcriptional program in oligodendrocytes
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9439679/
  99. Jul 2022
  100. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
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    academic.oup.com/gbe/article/14/7/evac106/6650251
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome of the booklouse, Liposcelis brunnea, provides insight into louse evolution and environmental stress adaptation
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9295366/
  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  103. May 2022
  104. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
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    gigabytejournal.com/articles/51
  105. Mar 2022
  106. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8963300/