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  1. Jan 2023
  2. www.sciencedirect.com www.sciencedirect.com
    Complete representation of action space and value in all dorsal striatal pathways
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2021.109437

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    sciencedirect.com/science/article/pii/S2211124721008548
  3. journals.plos.org journals.plos.org
    Swimming direction of the glass catfish is responsive to magnetic stimulation
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut.git.

      DOI: 10.1371/journal.pone.0248141

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    journals.plos.org/plosone/article
  4. elifesciences.org elifesciences.org
    Real-time, low-latency closed-loop feedback using markerless posture tracking
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut-live

      DOI: 10.7554/eLife.61909

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    elifesciences.org/articles/61909
  5. www.sciencedirect.com www.sciencedirect.com
    Cell-Type-Specific Outcome Representation in the Primary Motor Cortex
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2020.06.006

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    sciencedirect.com/science/article/pii/S0896627320304359
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    Multimodal cues displayed by submissive rats promote prosocial choices by dominants
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.cub.2022.06.026

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    sciencedirect.com/science/article/pii/S096098222200985X
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    Dissecting the molecular basis of human interneuron migration in forebrain assembloids from Timothy syndrome
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut/blob/master/README.md

      DOI: 10.1016/j.stem.2021.11.011

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    sciencedirect.com/science/article/pii/S1934590921004835
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    Detailed mapping of behavior reveals the formation of prelimbic neural ensembles across operant learning
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2021.11.022

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    sciencedirect.com/science/article/pii/S0896627321009715
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    Multiscale imaging informs translational mouse modeling of neurological disease
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    1. scibot 04 Jan 2023
      DeepLabCut

      DOI: 10.1016/j.neuron.2022.09.006

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    sciencedirect.com/science/article/pii/S089662732200811X
  10. www.nature.com www.nature.com
    Ultraflexible electrode arrays for months-long high-density electrophysiological mapping of thousands of neurons in rodents
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    1. scibot 04 Jan 2023
      DeepLabCut33

      DOI: 10.1038/s41551-022-00941-y

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    nature.com/articles/s41551-022-00941-y
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    Imaging neuronal migration and network activity in human forebrain assembloids
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut/blob/master/README.md

      DOI: 10.1016/j.xpro.2022.101478

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    sciencedirect.com/science/article/pii/S2666166722003586
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    A cerebellar-thalamocortical pathway drives behavioral context-dependent movement initiation
    1
    1. scibot 04 Jan 2023
      (https://github.com/DeepLabCut/DeepLabCut)

      DOI: 10.1016/j.neuron.2021.05.016

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    sciencedirect.com/science/article/pii/S0896627321003561
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    Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2020.07.032

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    sciencedirect.com/science/article/pii/S0896627320305766
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    A sinusoidal transformation of the visual field is the basis for periodic maps in area V2
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2021.09.053

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    sciencedirect.com/science/article/pii/S0896627321007261
  15. arxiv.org arxiv.org
    Microsoft Word - DeepLab_Human_Paper.docx
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    1. scibot 04 Jan 2023
      DeepLabCut

      DOI: 10.48550/arXiv.2201.02503

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    arxiv.org/pdf/2201.02503.pdf
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    A midbrain-thalamus-cortex circuit reorganizes cortical dynamics to initiate movement
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.cell.2022.02.006

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    sciencedirect.com/science/article/pii/S0092867422001465
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    Orientation Preference Maps in Microcebus murinus Reveal Size-Invariant Design Principles in Primate Visual Cortex
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.cub.2020.11.027

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    sciencedirect.com/science/article/pii/S0960982220317383
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    Large-scale two-photon calcium imaging in freely moving mice
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.cell.2022.02.017

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    sciencedirect.com/science/article/pii/S0092867422001970
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    Recruitment of frontal sensory circuits during visual discrimination
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2022.110932

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    sciencedirect.com/science/article/pii/S2211124722007148
  20. www.biorxiv.org www.biorxiv.org
    Rapid, automated and experimenter-free assessment of cognitive flexibility reveals learning impairments following recovery from activity-based anorexia in female rats
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    1. scibot 04 Jan 2023
      DeepLabCut

      DOI: 10.1101/2022.11.15.516539

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    biorxiv.org/content/10.1101/2022.11.15.516539v1
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biallelic PAX5 mutations cause hypogammaglobulinemia, sensorimotor deficits, and autism spectrum disorder
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    1. scibot 04 Jan 2023
      DeepLabCut

      DOI: 10.1084/jem.20220498

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    ncbi.nlm.nih.gov/pmc/articles/PMC9372349/
  22. www.nature.com www.nature.com
    Quantifying neuro-motor correlations during awake deep brain stimulation surgery using markerless tracking
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    1. scibot 04 Jan 2023
      DeepLabCut

      DOI: 10.1038/s41598-022-21860-7

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    nature.com/articles/s41598-022-21860-7
  23. www.mdpi.com www.mdpi.com
    Artificial Intelligence for Lameness Detection in Horses—A Preliminary Study
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut/tree/v2.2.0.6

      DOI: 10.3390/ani12202804

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    mdpi.com/2076-2615/12/20/2804
  24. www.sciencedirect.com www.sciencedirect.com
    Inhibitory control of synaptic signals preceding locomotion in mouse frontal cortex
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2021.110035

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    sciencedirect.com/science/article/pii/S2211124721015175
  25. arxiv.org arxiv.org
    2208.03819.pdf
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      DeepLabCut

      DOI: 10.48550/arXiv.2208.03819

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    arxiv.org/pdf/2208.03819.pdf
  26. www.biorxiv.org www.biorxiv.org
    Visuomotor learning promotes visually evoked activity in the medial prefrontal cortex
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1101/2022.05.31.494126

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    biorxiv.org/content/10.1101/2022.05.31.494126v3
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    Brainstem circuits encoding start, speed, and duration of swimming in adult zebrafish
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2022.10.034

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    sciencedirect.com/science/article/pii/S0896627322009941
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    Stimulation of medial amygdala GABA neurons with kinetically different channelrhodopsins yields opposite behavioral outcomes
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2022.110850

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    sciencedirect.com/science/article/pii/S2211124722006234
  29. www.sciencedirect.com www.sciencedirect.com
    A flexible two-photon fiberscope for fast activity imaging and precise optogenetic photostimulation of neurons in freely moving mice
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2022.10.030

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    sciencedirect.com/science/article/pii/S0896627322009631
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Validation of Supervised Deep Learning for Gait Analysis in the Cat
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    1. scibot 04 Jan 2023
      DeepLabCutTM

      DOI: 10.3389/fninf.2021.712623

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    ncbi.nlm.nih.gov/pmc/articles/PMC8417424/
  31. www.sciencedirect.com www.sciencedirect.com
    Cell-type-specific binocular vision guides predation in mice
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2021.03.010

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    sciencedirect.com/science/article/pii/S0896627321001586
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    Task-induced modulations of neuronal activity along the auditory pathway
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    1. scibot 04 Jan 2023
      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2021.110115

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    sciencedirect.com/science/article/pii/S2211124721016090
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    3D pose estimation enables virtual head fixation in freely moving rats
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2022.04.019

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    sciencedirect.com/science/article/pii/S0896627322003646
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    Neural correlates of blood flow measured by ultrasound
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2022.02.012

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    sciencedirect.com/science/article/pii/S0896627322001775
  35. www.biorxiv.org www.biorxiv.org
    Anatomically-based skeleton kinetics and pose estimation in freely-moving rodents
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      DeepLabCut 2.1.6.4

      DOI: 10.1101/2021.11.03.466906

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    biorxiv.org/content/10.1101/2021.11.03.466906v2
  36. www.biorxiv.org www.biorxiv.org
    Hippocampal firing fields anchored to a moving object predict homing direction during path-integration-based behavior
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      DeepLabCut

      DOI: 10.1101/2022.09.30.510268

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    biorxiv.org/content/10.1101/2022.09.30.510268v1
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    Neural responses in retrosplenial cortex associated with environmental alterations
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.isci.2021.103377

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    sciencedirect.com/science/article/pii/S2589004221013481
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    Movement-specific signaling is differentially distributed across motor cortex layer 5 projection neuron classes
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2022.110801

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    sciencedirect.com/science/article/pii/S221112472200568X
  39. www.mdpi.com www.mdpi.com
    Practices and Applications of Convolutional Neural Network-Based Computer Vision Systems in Animal Farming: A Review
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      DeepLabCut

      DOI: 10.3390/s21041492

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    mdpi.com/1424-8220/21/4/1492
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    Flexible inhibitory control of visually evoked defensive behavior by the ventral lateral geniculate nucleus
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.neuron.2021.09.003

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    sciencedirect.com/science/article/pii/S0896627321006577
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    Manipulation-specific cortical activity as mice handle food
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.cub.2022.09.045

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    sciencedirect.com/science/article/pii/S0960982222015457
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    Transition of distinct context-dependent ensembles from secondary to primary motor cortex in skilled motor performance
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      https://github.com/DeepLabCut/DeepLabCut

      DOI: 10.1016/j.celrep.2022.111494

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    Visual thalamocortical mechanisms of waking state-dependent activity and alpha oscillations
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    Inhibitory projections connecting the dentate gyri in the two hemispheres support spatial and contextual memory
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    Multisensory coding of angular head velocity in the retrosplenial cortex
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    Suppression of motion vision during course-changing, but not course-stabilizing, navigational turns
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    Demystifying image-based machine learning: A practical guide to automated analysis of field imagery using modern machine learning tools
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    Representation of ethological events by basolateral amygdala neurons
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    Lateral Line Ablation by Ototoxic Compounds Results in Distinct Rheotaxis Profiles in Larval Zebrafish
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    Striatal dopamine explains novelty-induced behavioral dynamics and individual variability in threat prediction
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    Kinematic analysis of sensorimotor behavior during variable ladder rung walking in short-tailed opossums (Monodelphis domestica)
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    A Deep Learning-Based Approach to Video-Based Eye Tracking for Human Psychophysics
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    Comparison of a Deep Learning-Based Pose Estimation System to Marker-Based and Kinect Systems in Exergaming for Balance Training
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      github.com/deeplabcut/deeplabcut

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    Stress-induced despair behavior develops independently of the Ahr-RORγt axis in CD4 + cells
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      DOI: 10.1038/s41598-022-12464-2

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    Swimming direction of the glass catfish is responsive to magnetic stimulation
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    Multi-animal pose estimation, identification and tracking with DeepLabCut
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      DOI: 10.1038/s41592-022-01443-0

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