53 Matching Annotations
  1. Nov 2024
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    High-throughput protein characterization by complementation using DNA barcoded fragment libraries
    1
    1. scibot 08 Nov 2024
      RRID:SCR_022170

      DOI: 10.1038/s44320-024-00068-z

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    pmc.ncbi.nlm.nih.gov/articles/PMC11535334/
  3. Sep 2024
  4. www.sciencedirect.com www.sciencedirect.com
    A developmental gradient reveals biosynthetic pathways to eukaryotic toxins in monocot geophytes
    1
    1. scibot 17 Sep 2024
      RRID:SCR_022170

      DOI: 10.1016/j.cell.2024.08.027

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    sciencedirect.com/science/article/pii/S0092867424009188
  5. www.nature.com www.nature.com
    Pervasive heteroplasmy in an invasive ambrosia beetle (Scolytinae) in southern California
    1
    1. scibot 16 Sep 2024
      RRID:SCR_022170

      DOI: 10.1038/s41437-024-00722-0

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    nature.com/articles/s41437-024-00722-0
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oligodendroglioma patient survival is associated with circulating B-cells and age
    1
    1. scibot 12 Sep 2024
      RRID:SCR_022170

      DOI: 10.1093/noajnl/vdae143

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11379917/
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DMDA-PatA mediates RNA sequence-selective translation repression by anchoring eIF4A and DDX3 to GNG motifs
    1
    1. scibot 05 Sep 2024
      RRID:SCR_022170

      DOI: 10.1038/s41467-024-51635-9

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11369270/
  8. Aug 2024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts
    1
    1. scibot 29 Aug 2024
      RRID:SCR_022170

      DOI: 10.1038/s41467-024-51258-0

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11347596/
  10. www.biorxiv.org www.biorxiv.org
    RAF inhibitors activate the integrated stress response by direct activation of GCN2
    1
    1. scibot 22 Aug 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.08.15.607884

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.08.15.607884v1
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance
    1
    1. scibot 20 Aug 2024
      RRID:SCR_022170

      DOI: 10.1038/s41467-024-50124-3

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11300592/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates
    1
    1. scibot 01 Aug 2024
      RRID:SCR_022170

      DOI: 10.1093/ismejo/wrae068

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    ncbi.nlm.nih.gov/pmc/articles/PMC11287214/
  13. Jul 2024
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cortical plasticity is associated with blood–brain barrier modulation
    1
    1. scibot 20 Jul 2024
      RRID:SCR_022170

      DOI: 10.7554/eLife.89611

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11257677/
  15. Jun 2024
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiplexed CRISPR-Cas9 mutagenesis of rice PSBS1 noncoding sequences for transgene-free overexpression
    1
    1. scibot 09 Jun 2024
      RRID:SCR_022170

      DOI: 10.1126/sciadv.adm7452

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11160471/
  17. May 2024
  18. www.biorxiv.org www.biorxiv.org
    Cell-type-specific expression of a DCYTB ortholog enables the choanoflagellate Salpingoeca rosetta to utilize ferric colloids
    1
    1. scibot 31 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.05.25.595918

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.05.25.595918v1
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluation of the Impact of Concentration and Extraction Methods on the Targeted Sequencing of Human Viruses from Wastewater
    1
    1. scibot 18 May 2024
      RRID:SCR_022170

      DOI: 10.1021/acs.est.4c00580

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11097627/
  20. www.biorxiv.org www.biorxiv.org
    Synchronization between chloroplastic and cytosolic protein synthesis for photosynthesis complex assembly
    1
    1. scibot 17 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.05.03.592458

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.05.03.592458v2
  21. www.biorxiv.org www.biorxiv.org
    High-throughput protein characterization by complementation using DNA barcoded fragment libraries
    1
    1. scibot 17 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.05.08.593210

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.05.08.593210v1
  22. www.biorxiv.org www.biorxiv.org
    Improving rice drought tolerance through host-mediated microbiome selection
    1
    1. scibot 10 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.02.03.578672

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.02.03.578672v1
  23. www.medrxiv.org www.medrxiv.org
    Evaluation of the impact of concentration and extraction methods on the targeted sequencing of human viruses from wastewater
    2
    1. scibot 03 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.01.18.24301434

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    2. scibot 03 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.01.18.24301434

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    medrxiv.org/content/10.1101/2024.01.18.24301434v1
  24. www.biorxiv.org www.biorxiv.org
    The RNA polymerase II general transcription factor TFIIB is a target for transcriptome control during cellular stress and viral infection
    2
    1. scibot 03 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.01.16.575933

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    2. scibot 03 May 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.01.16.575933

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.01.16.575933v1
  25. Apr 2024
  26. link.springer.com link.springer.com
    Hypoxia exposure blunts angiogenic signaling and upregulates the antioxidant system in endothelial cells derived from elephant seals
    1
    1. scibot 24 Apr 2024
      RRID:SCR_022170

      DOI: 10.1186/s12915-024-01892-3

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    link.springer.com/article/10.1186/s12915-024-01892-3
  27. link.springer.com link.springer.com
    Dysregulation of neuroprotective lipoxin pathway in astrocytes in response to cytokines and ocular hypertension​
    1
    1. scibot 17 Apr 2024
      RRID:SCR_022170

      DOI: 10.1186/s40478-024-01767-2

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    link.springer.com/article/10.1186/s40478-024-01767-2
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Regulation of Diseases-Associated Microglia in the Optic Nerve by Lipoxin B4 and Ocular Hypertension
    1
    1. scibot 11 Apr 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.03.18.585452

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10983965/
  29. www.nature.com www.nature.com
    Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis
    1
    1. scibot 10 Apr 2024
      RRID:SCR_022170

      DOI: 10.1038/s41477-024-01666-3

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    nature.com/articles/s41477-024-01666-3
  30. Mar 2024
  31. www.biorxiv.org www.biorxiv.org
    Krüppel-like Factor (KLF) family members control expression of genes required for serous cavity and alveolar macrophage identities
    1
    1. scibot 19 Mar 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.02.28.582578

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2024.02.28.582578v1
  32. Feb 2024
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling
    1
    1. scibot 28 Feb 2024
      RRID:SCR_022170

      DOI: 10.1101/2024.02.01.578453

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10871298/
  34. www.biorxiv.org www.biorxiv.org
    Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates
    1
    1. scibot 15 Feb 2024
      RRID:SCR_022170

      DOI: 10.1101/2023.12.21.572947

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2023.12.21.572947v1
  35. Jan 2024
  36. dx.doi.org dx.doi.org
    Perfluorooctanoic acid induces transcriptomic alterations in second trimester human cytotrophoblasts
    1
    1. scibot 18 Jan 2024
      RRID:SCR_022170

      DOI: 10.1093/toxsci/kfad097

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    dx.doi.org/10.1093/toxsci/kfad097
  37. Dec 2023
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modulation of tooth regeneration through opposing responses to Wnt and BMP signals in teleosts
    1
    1. scibot 21 Dec 2023
      RRID:SCR_022170

      DOI: 10.1242/dev.202168

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10730089/
  39. www.biorxiv.org www.biorxiv.org
    Codon optimality modulates protein output by tuning translation initiation
    1
    1. scibot 02 Dec 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.11.27.568910

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2023.11.27.568910v1
  40. www.biorxiv.org www.biorxiv.org
    Identification of intestinal mediators of Caenorhabditis elegans DBL-1/BMP immune signaling shaping gut microbiome composition
    1
    1. scibot 02 Dec 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.10.26.564221

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2023.10.26.564221v1
  41. Nov 2023
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Determinants of genetic diversity in Neotropical salamanders (Plethodontidae: Bolitoglossini)
    1
    1. scibot 26 Nov 2023
      RRID:SCR_022170

      DOI: 10.1002/ece3.10707

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    ncbi.nlm.nih.gov/pmc/articles/PMC10654480/
  43. www.sciencedirect.com www.sciencedirect.com
    Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth
    1
    1. scibot 22 Nov 2023
      RRID:SCR_022170

      DOI: 10.1016/j.cell.2023.10.026

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    sciencedirect.com/science/article/pii/S0092867423011777
  44. Oct 2023
  45. www.biorxiv.org www.biorxiv.org
    Multiplexed CRISPR/Cas9 mutagenesis of rice PSBS1 non-coding sequences for transgene-free overexpression
    1
    1. scibot 27 Oct 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.10.20.563333

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    biorxiv.org/content/10.1101/2023.10.20.563333v1
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An RFX transcription factor regulates ciliogenesis in the closest living relatives of animals
    1
    1. scibot 06 Oct 2023
      RRID:SCR_022170

      DOI: 10.1016/j.cub.2023.07.022

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    ncbi.nlm.nih.gov/pmc/articles/PMC10530576/
  47. www.nature.com www.nature.com
    Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells
    1
    1. scibot 06 Oct 2023
      RRID:SCR_022170

      DOI: 10.1038/s41592-023-02028-1

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    nature.com/articles/s41592-023-02028-1
  48. Sep 2023
  49. www.biorxiv.org www.biorxiv.org
    Pateamine A mediates RNA sequence-selective translation repression by anchoring eIF4A and DDX3 to GNG motifs
    1
    1. scibot 30 Sep 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.09.21.558742

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    biorxiv.org/content/10.1101/2023.09.21.558742v1
  50. www.sciencedirect.com www.sciencedirect.com
    Modular pooled discovery of synthetic knockin sequences to program durable cell therapies
    1
    1. scibot 16 Sep 2023
      RRID:SCR_022170

      DOI: 10.1016/j.cell.2023.08.013

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    sciencedirect.com/science/article/pii/S0092867423009029
  51. Aug 2023
  52. link.springer.com link.springer.com
    Geochemical constraints on bacteriophage infectivity in terrestrial environments
    1
    1. scibot 23 Aug 2023
      RRID:SCR_022170

      DOI: 10.1038/s43705-023-00297-7

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    link.springer.com/article/10.1038/s43705-023-00297-7
  53. www.biorxiv.org www.biorxiv.org
    Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis
    1
    1. scibot 12 Aug 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.08.02.551648

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    biorxiv.org/content/10.1101/2023.08.02.551648v2
  54. Jul 2023
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Coding and non-coding elements comprise a regulatory network controlling transcription in Kaposi’s sarcoma-associated herpesvirus
    1
    1. scibot 25 Jul 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.07.08.548212

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    ncbi.nlm.nih.gov/pmc/articles/PMC10350069/
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dysregulation of Neuroprotective Lipoxin Pathway in Astrocytes in Response to Cytokines and Ocular Hypertension
    1
    1. scibot 18 Jul 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.06.22.546157

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    ncbi.nlm.nih.gov/pmc/articles/PMC10327029/
  57. Jun 2023
  58. www.nature.com www.nature.com
    A convolutional neural network STIFMap reveals associations between stromal stiffness and EMT in breast cancer
    1
    1. scibot 17 Jun 2023
      RRID:SCR_022170

      DOI: 10.1038/s41467-023-39085-1

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    nature.com/articles/s41467-023-39085-1
  59. May 2023
  60. www.biorxiv.org www.biorxiv.org
    Cortical Plasticity is associated with Blood-Brain-Barrier Modulation
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    1. scibot 18 May 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.04.23.537964

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    biorxiv.org/content/10.1101/2023.04.23.537964v2
  61. www.biorxiv.org www.biorxiv.org
    A developmental gradient reveals biosynthetic pathways to eukaryotic toxins in monocot geophytes
    1
    1. scibot 18 May 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.05.12.540595

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    biorxiv.org/content/10.1101/2023.05.12.540595v1
  62. link.springer.com link.springer.com
    Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes
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    1. scibot 04 May 2023
      RRID:SCR_022170

      DOI: 10.1186/s12864-023-09277-6

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    link.springer.com/article/10.1186/s12864-023-09277-6
  63. Apr 2023
  64. www.biorxiv.org www.biorxiv.org
    Geochemical constraints on bacteriophage infectivity in terrestrial environments
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    1. scibot 20 Apr 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.04.10.536276

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    biorxiv.org/content/10.1101/2023.04.10.536276v1
  65. link.springer.com link.springer.com
    Engineering osmolysis susceptibility in Cupriavidus necator and Escherichia coli for recovery of intracellular products
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    1. scibot 13 Apr 2023
      RRID:SCR_022170

      DOI: 10.1186/s12934-023-02064-8

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    link.springer.com/article/10.1186/s12934-023-02064-8
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    X-chromosome target specificity diverged between dosage compensation mechanisms of two closely related Caenorhabditis species
    1
    1. scibot 07 Apr 2023
      RRID:SCR_022170

      DOI: 10.7554/eLife.85413

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    ncbi.nlm.nih.gov/pmc/articles/PMC10076027/
  67. www.biorxiv.org www.biorxiv.org
    Intracellular replication of Pseudomonas aeruginosa in epithelial cells requires suppression of the caspase-4 inflammasome
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    1. scibot 05 Apr 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.02.13.528260

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    biorxiv.org/content/10.1101/2023.02.13.528260v1
  68. Mar 2023
  69. www.biorxiv.org www.biorxiv.org
    Streamlined and sensitive mono- and diribosome profiling in yeast and human cells
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    1. scibot 03 Mar 2023
      RRID:SCR_022170

      DOI: 10.1101/2023.02.01.526718

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    biorxiv.org/content/10.1101/2023.02.01.526718v1
  70. Dec 2022
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comprehensive molecular and morphological resolution of blubber stratification in a deep-diving, fasting-adapted seal
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    1. scibot 30 Dec 2022
      RRID:SCR_022170

      DOI: 10.3389/fphys.2022.1057721

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9795062/
  72. Sep 2022
  73. www.pnas.org www.pnas.org
    Combinatorial clustering of distinct DNA motifs directs synergistic binding of <i>Caenorhabditis elegans</i> dosage compensation complex to X chromosomes
    1
    1. scibot 10 Sep 2022
      RRID:SCR_022170

      DOI: 10.1073/pnas.2211642119

      Resource: University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)

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    pnas.org/doi/abs/10.1073/pnas.2211642119