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46 Matching Annotations

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Highly quantitative measurement of differential protein-genome binding with PerCell chromatin sequencing

1
1. scibot 24 Sep 2025
  
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  WIK
  
  DOI: 10.1016/j.crmeth.2025.101052
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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cell.com/cell-reports-methods/fulltext/S2667-2375(25)00088-8
anatomypubs.onlinelibrary.wiley.com anatomypubs.onlinelibrary.wiley.com

Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins

1
1. scibot 24 Sep 2025
  
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  WIK
  
  DOI: 10.1002/dvdy.70022
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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anatomypubs.onlinelibrary.wiley.com/doi/full/10.1002/dvdy.70022
Jul 2025
www.sciencedirect.com www.sciencedirect.com

Rhabdomyosarcoma fusion oncoprotein initially pioneers a neural signature in vivo

1
1. scibot 03 Jul 2025
  
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  ZIRCCat# ZL84
  
  DOI: 10.1016/j.celrep.2025.115923
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @areedewitt04
  
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sciencedirect.com/science/article/pii/S2211124725006941
May 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Whole-Brain Mapping in Adult Zebrafish and Identification of the Functional Brain Network Underlying the Novel Tank Test

1
1. scibot 17 May 2025
  
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  ZL84
  
  DOI: 10.1523/ENEURO.0382-24.2025
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11936448/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Origin of Ewing sarcoma by embryonic reprogramming of neural crest to mesoderm

1
1. scibot 16 May 2025
  
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  WIK wild-type
  
  DOI: 10.1101/2024.10.27.620438
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11565755/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Caveolin-1 regulates context-dependent signaling and survival in Ewing Sarcoma

1
1. scibot 16 May 2025
  
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  Wild Indian Karyotype (WIK)
  
  DOI: 10.1101/2024.09.23.614468
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11661136/
www.biorxiv.org www.biorxiv.org

Highly quantitative measurement of differential protein-genome binding with PerCell chromatin sequencing

1
1. scibot 16 May 2025
  
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  WIK
  
  DOI: 10.1101/2024.07.12.603283
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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biorxiv.org/content/10.1101/2024.07.12.603283v1
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Rhabdomyosarcoma fusion oncoprotein initially pioneers a neural signature in vivo

1
1. scibot 16 May 2025
  
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  WIK
  
  DOI: 10.1101/2024.07.12.603270
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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biorxiv.org/content/10.1101/2024.07.12.603270v1
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Establishment and genetic characterization of zebrafish RW line

1
1. scibot 16 May 2025
  
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  WIK
  
  DOI: 10.1038/s41598-025-98674-w
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12032133/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

mTOR-regulated mitochondrial metabolism limits mycobacterium-induced cytotoxicity

1
1. scibot 16 May 2025
  
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  WIK
  
  DOI: 10.1016/j.cell.2022.08.018
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC9596383/
link.springer.com link.springer.com

Functional Genomics of Novel Rhabdomyosarcoma Fusion-Oncogenes Using Zebrafish

1
1. scibot 16 May 2025
  
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  WIK
  
  DOI: 10.1007/978-1-0716-3401-1_2
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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link.springer.com/protocol/10.1007/978-1-0716-3401-1_2
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Decreased GABA levels during development result in increased connectivity in the larval zebrafish tectum

1
1. scibot 19 Nov 2024
  
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  WIK
  
  DOI: 10.1101/2024.09.11.612511
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11419034/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Whole-brain mapping in adult zebrafish and identification of a novel tank test functional connectome

1
1. scibot 19 Nov 2024
  
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  ZL84
  
  DOI: 10.1101/2024.08.16.607981
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @AleksanderDrozdz
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11370427/
Aug 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

VGLL2-NCOA2 leverages developmental programs for pediatric sarcomagenesis

1
1. scibot 13 Aug 2024
  
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  ZL84
  
  DOI: 10.1016/j.celrep.2023.112013
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10054615/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Volumetric light sheet imaging with adaptive optics correction

1
1. scibot 13 Aug 2024
  
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  WIK
  
  DOI: 10.1364/BOE.473237
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10110302/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Opto-inflammasome in zebrafish as a tool to study cell and tissue responses to speck formation and cell death

1
1. scibot 13 Aug 2024
  
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  WIK
  
  DOI: 10.7554/eLife.86373
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC10328535/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Individual differences in the boldness of female zebrafish are associated with alterations in serotonin function

1
1. scibot 13 Aug 2024
  
  in Public
  
  ZL84
  
  DOI: 10.1101/2024.02.13.580160
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC10888793/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Zebrafish her3 knockout impacts developmental and cancer-related gene signatures

1
1. scibot 13 Aug 2024
  
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  WIK
  
  DOI: 10.1016/j.ydbio.2023.01.003
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC10054701/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Individual differences in the boldness of female zebrafish are associated with alterations in serotonin function

1
1. scibot 13 Aug 2024
  
  in Public
  
  ZL84
  
  DOI: 10.1242/jeb.247483
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @olekpark
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC11213521/
May 2023
onlinelibrary.wiley.com onlinelibrary.wiley.com

Visual social preferences of lone zebrafish in a novel environment: strain and anxiolytic effects

1
1. scibot 05 May 2023
  
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  WIK
  
  DOI: 10.1111/j.1601-183X.2012.00770.x
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRID:ZIRC_ZL84 RRIDCUR:Missing
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onlinelibrary.wiley.com/doi/full/10.1111/j.1601-183X.2012.00770.x
Apr 2023
anatomypubs.onlinelibrary.wiley.com anatomypubs.onlinelibrary.wiley.com

Tol2 gene trap integrations in the zebrafish amyloid precursor protein genes appa and aplp2 reveal accumulation of secreted APP at the embryonic veins

1
1. scibot 29 Apr 2023
  
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  WIK
  
  DOI: 10.1002/dvdy.23725
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRID:ZIRC_ZL84 RRIDCUR:Missing
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anatomypubs.onlinelibrary.wiley.com/doi/full/10.1002/dvdy.23725
Feb 2023
www.biorxiv.org www.biorxiv.org

Zebrafish Cre/lox regulated UFlip alleles generated by CRISPR/Cas targeted integration provide cell-type specific conditional gene inactivation

1
1. scibot 28 Feb 2023
  
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  WIK
  
  DOI: 10.1101/2021.06.18.448732
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRID:ZIRC_ZL84 RRIDCUR:Missing
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biorxiv.org/content/10.1101/2021.06.18.448732v1
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Dysregulated heparan sulfate proteoglycan metabolism promotes Ewing sarcoma tumor growth

1
1. scibot 28 Feb 2023
  
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  WIK
  
  DOI: 10.7554/eLife.69734
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRID:ZIRC_ZL84 RRIDCUR:Missing
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ncbi.nlm.nih.gov/pmc/articles/PMC8942468/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Cre/lox regulated conditional rescue and inactivation with zebrafish UFlip alleles generated by CRISPR-Cas9 targeted integration

1
1. scibot 28 Feb 2023
  
  in Public
  
  ZIRC:ZL84
  
  DOI: 10.7554/eLife.71478
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRID:ZIRC_ZL84 RRIDCUR:Missing
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ncbi.nlm.nih.gov/pmc/articles/PMC9270027/
www.sciencedirect.com www.sciencedirect.com

Behavioral research in zebrafish (Danio rerio): strain as source of variation

1
1. scibot 25 Feb 2023
  
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  WIK
  
  DOI: 10.1016/B978-0-12-817528-6.00015-2
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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sciencedirect.com/science/article/pii/B9780128175286000152
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

PAX3-FOXO1 transgenic zebrafish models identify HES3 as a mediator of rhabdomyosarcoma tumorigenesis

1
1. scibot 25 Feb 2023
  
  in Public
  
  ZIRC:ZL84
  
  DOI: 10.7554/eLife.33800
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC5988421/
www.biorxiv.org www.biorxiv.org

Retinoblastoma binding protein 4 maintains cycling neural stem cells and prevents DNA damage and Tp53-dependent apoptosis in rb1 mutant neural progenitors

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1101/427344
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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biorxiv.org/content/10.1101/427344v1
www.nature.com www.nature.com

Endogenous zebrafish proneural Cre drivers generated by CRISPR/Cas9 short homology directed targeted integration

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1038/s41598-021-81239-y
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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nature.com/articles/s41598-021-81239-y
journals.plos.org journals.plos.org

Molecular and Cellular Characterization of a Zebrafish Optic Pathway Tumor Line Implicates Glia-Derived Progenitors in Tumorigenesis

1
1. scibot 24 Feb 2023
  
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  DOI: 10.1371/journal.pone.0114888
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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journals.plos.org/plosone/article
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

GCNA Preserves Genome Integrity and Fertility Across Species

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1016/j.devcel.2019.11.007
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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ncbi.nlm.nih.gov/pmc/articles/PMC6946843/
www.sciencedirect.com www.sciencedirect.com

A novel zebrafish model of hyperthermia-induced seizures reveals a role for TRPV4 channels and NMDA-type glutamate receptors

1
1. scibot 24 Feb 2023
  
  in Public
  
  WIK
  
  DOI: 10.1016/j.expneurol.2012.06.013
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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sciencedirect.com/science/article/pii/S0014488612002555
www.biorxiv.org www.biorxiv.org

In vivo profiling of site-specific human cancer cell states in zebrafish

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1101/2021.06.09.447621
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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biorxiv.org/content/10.1101/2021.06.09.447621v2
rupress.org rupress.org

In vivo 3D profiling of site-specific human cancer cell morphotypes in zebrafish

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1083/jcb.202109100
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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rupress.org/jcb/article/221/11/e202109100/213501/In-vivo-3D-profiling-of-site-specific-human-cancer
journals.biologists.com journals.biologists.com

Epigenetic regulators Rbbp4 and Hdac1 are overexpressed in a zebrafish model of RB1 embryonal brain tumor, and are required for neural progenitor survival and proliferation

1
1. scibot 24 Feb 2023
  
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  WIK
  
  DOI: 10.1242/dmm.034124
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:ZIRC_ZL84
  
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  RRIDCUR:Missing RRID:ZIRC_ZL84
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journals.biologists.com/dmm/article/11/6/dmm034124/53326/Epigenetic-regulators-Rbbp4-and-Hdac1-are
www.nature.com www.nature.com

Rapid tumor induction in zebrafish by TALEN-mediated somatic inactivation of the <i>retinoblastoma1</i> tumor suppressor <i>rb1</i>

1
1. scibot 17 Feb 2023
  
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  WIK
  
  DOI: 10.1038/srep13745
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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nature.com/articles/srep13745
www.sciencedirect.com www.sciencedirect.com

Imaging the Glycome in Living Systems

1
1. scibot 16 Feb 2023
  
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  WIK
  
  DOI: 10.1016/B978-0-12-388448-0.00029-2
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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sciencedirect.com/science/article/pii/B9780123884480000292
Nov 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

NAMPT-derived NAD+ fuels PARP1 to promote skin inflammation through parthanatos cell death

1
1. scibot 27 Nov 2021
  
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  WIK
  
  DOI: 10.1371/journal.pbio.3001455
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @bandrow
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8601609/
Sep 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Whole-organism 3D quantitative characterization of zebrafish melanin by silver deposition micro-CT

1
1. scibot 22 Sep 2021
  
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  RRID:ZIRC_ZL84
  
  DOI: 10.7554/eLife.68920
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8445617/
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Impact of Tumor Nitric Oxide Production on VEGFA Expression and Tumor Growth in a Zebrafish Rat Glioma Xenograft Model

1
1. scibot 27 Jul 2021
  
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  Adult wild-type (WIK
  
  DOI: 10.1371/journal.pone.0120435
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC4359111/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Zebrafish P54 RNA helicases are cytoplasmic granule residents that are required for development and stress resilience

1
1. scibot 27 Jul 2021
  
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  WIK
  
  DOI: 10.1242/bio.015826
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5087673/
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Inflammatory Effects of the Plant Protection Product Stifenia (FEN560) on Vertebrates

1
1. scibot 27 Jul 2021
  
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  WIK strain
  
  DOI: 10.3389/fpubh.2017.00074
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5402227/
Mar 2021
elifesciences.org elifesciences.org

Efficient targeted integration directed by short homology in zebrafish and mammalian cells

1
1. scibot 09 Mar 2021
  
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  ZIRC:ZL84
  
  DOI: 10.7554/eLife.53968
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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elifesciences.org/articles/53968
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Intranuclear inclusions consistent with a Nucleospora sp. in a lymphoid lesion in a laboratory zebrafish, Danio rerio (Hamilton 1822)

1
1. scibot 06 Mar 2021
  
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  WIK
  
  DOI: 10.1111/jfd.13271
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7924166/
Jan 2020
link.springer.com link.springer.com

Untitled document

1
1. scibot 12 Jan 2020
  
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  RRID:ZIRC_ZL84
  
  DOI: 10.1007/s00418-018-1764-8
  
  Resource: (ZIRC Cat# ZL84,RRID:ZIRC_ZL84)
  
  Curator: @evieth
  
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link.springer.com/article/10.1007/s00418-018-1764-8
Nov 2018
onlinelibrary.wiley.com onlinelibrary.wiley.com

Phylogeny and distribution of protein kinase C variants in the zebrafish

1
1. scibot 05 Nov 2018
  
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  RRID:ZIRC_ZL84
  
  Curator: @evieth
  
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onlinelibrary.wiley.com/doi/10.1002/cne.24395/full
Nov 2017
onlinelibrary.wiley.com onlinelibrary.wiley.com

Feedback from each retinal neuron population drives expression of subsequent fate determinant genes without influencing the cell cycle exit timing

1
1. scibot 08 Nov 2017
  
  in Public
  
  ZIRC_ZL84
  
  Curator: @jcabotaj
  
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onlinelibrary.wiley.com/doi/10.1002/cne.23976/full