39 Matching Annotations
  1. Mar 2022
  2. www.scirp.org www.scirp.org
    A New Numerical Method for DNA Sequence Analysis Based on 8-Dimensional Vector Representation
    1
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    scirp.org/journal/paperinformation.aspx
  3. www.sciencedirect.com www.sciencedirect.com
    Gene prediction by the noise-assisted MEMD and wavelet transform for identifying the protein coding regions
    1
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    sciencedirect.com/science/article/pii/S0208521620301467
  4. asp-eurasipjournals.springeropen.com asp-eurasipjournals.springeropen.com
    Segmentation of DNA into Coding and Noncoding Regions Based on Recursive Entropic Segmentation and Stop-Codon Statistics
    1
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    asp-eurasipjournals.springeropen.com/articles/10.1155/S1110865704309212
  5. www.nature.com www.nature.com
    Comparative analysis of regulatory information and circuits across distant species
    1
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    nature.com/articles/nature13668
  6. bsb-eurasipjournals.springeropen.com bsb-eurasipjournals.springeropen.com
    A 2D graphical representation of the sequences of DNA based on triplets and its application
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    bsb-eurasipjournals.springeropen.com/articles/10.1186/1687-4153-2014-1
  7. journals.sagepub.com journals.sagepub.com
    Effective Encoding for DNA Sequence Visualization Based on Nucleotide's Ring Structure - A.T.M. Golam Bari, Rokeya Reaz, A.K.M. Tauhidul Islam, Ho-Jin Choi, Byeong-Soo Jeong, 2013
    1
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    journals.sagepub.com/doi/full/10.4137/EBO.S12160
  8. www.sciencedirect.com www.sciencedirect.com
    A novel coding method for gene mutation correction during protein translation process
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    sciencedirect.com/science/article/pii/S0022519311006035
  9. academic.oup.com academic.oup.com
    Finding pathogenicity islands and gene transfer events in genome data
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    academic.oup.com/bioinformatics/article/16/10/932/223642
  10. jre.cplire.ru jre.cplire.ru
    Digital signal processing-based approach to identify splicing mutations for detecting genetic diseases
    2
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    jre.cplire.ru/jre/jan21/11/abstract.html
  11. asp-eurasipjournals.springeropen.com asp-eurasipjournals.springeropen.com
    Novel methodologies for spectral classification of exon and intron sequences
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    asp-eurasipjournals.springeropen.com/articles/10.1186/1687-6180-2012-50
  12. www.sciencedirect.com www.sciencedirect.com
    Similarity/dissimilarity calculation methods of DNA sequences: A survey
    2
    2. Seda_Nur 22 Mar 2022
      Similarity/dissimilarity calculation methods of DNA sequences: A survey

      Benzerlik farklılık tespiti, filogenetik analiz için review makale önemli

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    sciencedirect.com/science/article/pii/S1093326317304023
  13. www.sciencedirect.com www.sciencedirect.com
    Mapping sequence to feature vector using numerical representation of codons targeted to amino acids for alignment-free sequence analysis
    2
    2. Seda_Nur 22 Mar 2022
      Weight assignment of nucleotides

      Kodon derecesine göre kodlama için tekrar ak aynıysa veya benzerse onun için ekle ve üçncü bölüm için gen tespitine bu kodlama için ekle

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    sciencedirect.com/science/article/pii/S0378111920307654
  14. www.sciencedirect.com www.sciencedirect.com
    Time series model based on global structure of complete genome
    1
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    sciencedirect.com/science/article/pii/S0960077900001478
  15. link.springer.com link.springer.com
    LNCS 9096 - Bioinformatics Research and Applications
    1
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    link.springer.com/content/pdf/10.1007/978-3-319-19048-8.pdf
  16. ieeexplore.ieee.org ieeexplore.ieee.org
    Examining coding structure and redundancy in DNA
    1
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    ieeexplore.ieee.org/abstract/document/1578665
  17. books.google.com books.google.com
    Molecular Evolution and Phylogenetics
    1
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    books.google.com/books/about/Molecular_Evolution_and_Phylogenetics.html
  18. iopscience.iop.org iopscience.iop.org
    Open Access proceedings Journal of Physics: Conference series
    2
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    iopscience.iop.org/article/10.1088/1757-899X/830/3/032051/pdf
  19. www.sciencedirect.com www.sciencedirect.com
    Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome
    1
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    sciencedirect.com/science/article/pii/S2405471215000794
  20. ieeexplore.ieee.org ieeexplore.ieee.org
    IEEE Xplore Full-Text PDF:
    1
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    ieeexplore.ieee.org/stamp/stamp.jsp
  21. www.sciencedirect.com www.sciencedirect.com
    Numerical encoding of DNA sequences by chaos game representation with application in similarity comparison
    1
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    sciencedirect.com/science/article/pii/S0888754316300854
  22. www.sciencedirect.com www.sciencedirect.com
    i6mA-DNC: Prediction of DNA N6-Methyladenosine sites in rice genome based on dinucleotide representation using deep learning
    1
    1. Seda_Nur 22 Mar 2022
      i6mA-DNC: Prediction of DNA N6-Methyladenosine sites in rice genome based on dinucleotide representation using deep learning

      Gen tespiti için k-mer e ekle

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    sciencedirect.com/science/article/pii/S0169743919306276
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ajhg00369-0003.pdf
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC1706731/pdf/ajhg00369-0003.pdf
  24. www.mecs-press.org www.mecs-press.org
    Template
    1
    1. Seda_Nur 22 Mar 2022
      Table 2. Comparison between six numerical mapping techniques in splicing site prediction (TA and TD denote to average threshold of acceptor and donor site for testing genes)

      Farklı eşik değerlerde sayısallaştırma tekniklerinin karşılaştırılması için önemli makale

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    mecs-press.org/ijitcs/ijitcs-v6-n8/IJITCS-V6-N8-7.pdf
  25. www.sciencedirect.com www.sciencedirect.com
    A novel entropy-based mapping method for determining the protein-protein interactions in viral genomes by using coevolution analysis
    1
    1. Seda_Nur 22 Mar 2022
      A novel entropy-based mapping method for determining the protein-protein interactions in viral genomes by using coevolution analysis

      Entropy tabanlı kodlama için filogenetiğe eklenebilirmi bak

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    sciencedirect.com/science/article/pii/S1746809420304687
  26. ieeexplore.ieee.org ieeexplore.ieee.org
    Genomic signal processing
    1
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    ieeexplore.ieee.org/abstract/document/939833
  27. academic.oup.com academic.oup.com
    The DNA walk and its demonstration of deterministic chaos—relevance to genomic alterations in lung cancer
    1
    1. Seda_Nur 22 Mar 2022
      The DNA walk and its demonstration of deterministic chaos—relevance to genomic alterations in lung cancer

      DNA walk için hastalık tespitine ekle

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    academic.oup.com/bioinformatics/article/35/16/2738/5280132
  28. www.sciencedirect.com www.sciencedirect.com
    Automated detection of cancerous genomic sequences using genomic signal processing and machine learning
    1
    1. Seda_Nur 22 Mar 2022
      Automated detection of cancerous genomic sequences using genomic signal processing and machine learning

      Hastalık-gen tespiti için Quaternion ve voss için ekle

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    sciencedirect.com/science/article/pii/S0167739X18326645
  29. www.sciencedirect.com www.sciencedirect.com
    Applying frequency chaos game representation with perceptual image hashing to gene sequence phylogenetic analyses
    1
    1. Seda_Nur 22 Mar 2022
      Applying frequency chaos game representation with perceptual image hashing to gene sequence phylogenetic analyses

      Chaos game representation için filogenetiğe ekle

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    sciencedirect.com/science/article/pii/S1093326321001133
  30. www.sciencedirect.com www.sciencedirect.com
    Detecting conserved coding genomic regions through signal processing of nucleotide substitution patterns
    2
    1. Seda_Nur 22 Mar 2022
      yani, dizinin her pozisyonunda her nükleotidin varlığını (1) veya yokluğunu (0) gösteren ikili vektörlerle.

      Kodlama bölgelerinin tespitinde voss için ekle

    2. Seda_Nur 22 Mar 2022
      Nükleotit ikame modellerinin sinyal işleme yoluyla korunmuş kodlama genomik bölgelerinin saptanması

      Kodonlara göre genetik kodlama yapmak için sonra tekrar bak

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    sciencedirect.com/science/article/pii/S093336570800105X
  31. ieeexplore.ieee.org ieeexplore.ieee.org
    Gene Identification Using the Z-Curve Representation
    1
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    ieeexplore.ieee.org/stampPDF/getPDF.jsp
  32. link.springer.com link.springer.com
    A non-invasive cancer gene detection technique using FLANN based adaptive filter
    1
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    link.springer.com/content/pdf/10.1007/s00542-018-4036-6.pdf
  33. www.sciencedirect.com www.sciencedirect.com
    An improved model for whole genome phylogenetic analysis by Fourier transform
    1
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    sciencedirect.com/science/article/pii/S0022519315003124
  34. www.sciencedirect.com www.sciencedirect.com
    Phylogenetic analysis of protein sequences based on a novel k-mer natural vector method
    1
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    sciencedirect.com/science/article/pii/S0888754318304336
  35. ieeexplore.ieee.org ieeexplore.ieee.org
    Signal Processing in Sequence Analysis: Advances in Eukaryotic Gene Prediction
    1
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    ieeexplore.ieee.org/document/4550545