This exchange reminds me of the new Logan**Italic Movie that just came out.
I see the mutant Caliban as a man who is getting used and abused by men in power, blatantly against his will. Caliban's story origins start when Callisto finds him and 'takes him in' due to his tracking abilities to find other mutants (which could also parallel to European powers during colonial and imperialistic times; and how they would take native peoples that they counted as "others" and turned them against their own people either forcefully or for money and stature).
Anyway, Callisto actually named Caliban after the Caliban in the *Tempest** due to his decrepit appearance.
He is a definite outsider that is constantly wronged, but does his master's will typically out of fear.
Speaking of masters, back to whether prospero is or isn't a "good" character: Logan personifies the righteous side, where he does care for his daughter (as Prospero cares for Miranda), and he has been wronged and is seeking to get his strength/power back. We see the story through his lense primarily, and are 100% routing for Logan (even though Logan kills and mutilates a significant amount of people).
The other argument, that Prospero is a manipulative dick (yes he kinda is), is personified by Donald Pierce (the dude with the really cool Skywalker-style arm, or, Cyborg). He basically maniupulates the whole scene, especially Caliban. The web of character personifications can be complex and very much dynamic, and the different characters from Logan can be assigned a multitude of roles from the Tempest.
http://marvel.com/universe/Caliban