Hypothesis

28 Matching Annotations

Sep 2022
rnacentral.org rnacentral.org

RNAcentral

1
1. jeanete.moreno.manzano 21 Sep 2022
  
  in Public
  
  RNAcentral
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1766
  
  NARCategory: RNA sequence databases
  
  wd: https://www.wikidata.org/wiki/Q99839604
  
  NARdb biodatabases wikidata
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wikidata

NARdb

biodatabases

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jeanete.moreno.manzano

URL

rnacentral.org/
bioinfo.life.hust.edu.cn bioinfo.life.hust.edu.cn

Human LNCediting

1
1. jeanete.moreno.manzano 21 Sep 2022
  
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  LNCediting
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1919
  
  NARCategory: RNA sequence databases
  
  wd: https://www.wikidata.org/wiki/Q1136574
  
  NARdb biodatabases wikidata
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wikidata

NARdb

biodatabases

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jeanete.moreno.manzano

URL

bioinfo.life.hust.edu.cn/LNCediting
rssf.i2bc.paris-saclay.fr rssf.i2bc.paris-saclay.fr

Laboratoire Sequence, Structure et Fonction des ARN

1
1. jeanete.moreno.manzano 21 Sep 2022
  
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  RNA Sequence, Structure and Function
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1466
  
  NARCategory: RNA sequence databases
  
  wd: https://www.wikidata.org/wiki/Q6952338
  
  NARdb biodatabases wikidata
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wikidata

NARdb

biodatabases

Annotators

jeanete.moreno.manzano

URL

rssf.i2bc.paris-saclay.fr/
rfam.org rfam.org

Rfam: The RNA families database

1
1. jeanete.moreno.manzano 21 Sep 2022
  
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  Rfam
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/382 https://www.oxfordjournals.org/nar/database/summary/51
  
  NARCategory: RNA sequence databases
  
  wd: https://www.wikidata.org/wiki/Q3577126
  
  NARdb biodatabases wikidata
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wikidata

NARdb

biodatabases

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jeanete.moreno.manzano

URL

rfam.org/
seve.ibmp.unistra.fr seve.ibmp.unistra.fr

PlantRNA

1
1. jeanete.moreno.manzano 21 Sep 2022
  
  in Public
  
  PlantRNA
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1578
  
  NARCategory: RNA sequence databases
  
  wd: https://www.wikidata.org/wiki/Q114055427
  
  NARdb biodatabases wikidata
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wikidata

NARdb

biodatabases

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jeanete.moreno.manzano

URL

seve.ibmp.unistra.fr/plantrna/
Jul 2022
www.unicarbkb.org www.unicarbkb.org

UniCarbKB

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/292
  
  NARCategory: Structure Databases
  
  Subcategory: Carbohydrates
  
  WD: https://www.wikidata.org/wiki/Q112680800
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

unicarbkb.org/
consurfdb.tau.ac.il consurfdb.tau.ac.il

ConSurf-DB | Evolutionary conservation profiles of proteins

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1269
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112888886
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

consurfdb.tau.ac.il/
www.cathdb.info www.cathdb.info

CATH: Protein Structure Classification Database at UCL

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/258
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q5008897
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

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jeanete.moreno.manzano

URL

cathdb.info/
pdbflex.org pdbflex.org

PDB Flex :: GodzikLab

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1851
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112679436
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

pdbflex.org/
prodata.swmed.edu prodata.swmed.edu

Evolutionary Classification of Protein Domains

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1936
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q105294944
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

prodata.swmed.edu/ecod/
ahdb.ee.ncku.edu.tw ahdb.ee.ncku.edu.tw

Apache2 Ubuntu Default Page: It works

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1488
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112680553
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

ahdb.ee.ncku.edu.tw/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

NCBI Protein Domains and Macromolecular Structures

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/270
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q15632054
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

ncbi.nlm.nih.gov/Structure/index.shtml
pocket.med.wayne.edu pocket.med.wayne.edu

FootPrinting Protein Functional Surfaces

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1353
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112671543
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

pocket.med.wayne.edu/fpop/
as-alps.nagahama-i-bio.ac.jp as-alps.nagahama-i-bio.ac.jp

AS-ALPS (Alternative Splicing - ALteration of Protein Structure)

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1284
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112671519
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

as-alps.nagahama-i-bio.ac.jp/
pcidb.russelllab.org pcidb.russelllab.org

ProtChemSI: protein-chemical interaction database

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1500
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112671503
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

pcidb.russelllab.org/
www.ebi.ac.uk www.ebi.ac.uk

SIFTS < PDBe < EMBL-EBI

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1615
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112658076
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

ebi.ac.uk/pdbe/docs/sifts/
linkprot.cent.uw.edu.pl linkprot.cent.uw.edu.pl

LinkProt: A database of proteins with topological links

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1932
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112658036
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

linkprot.cent.uw.edu.pl/
idp1.force.cs.is.nagoya-u.ac.jp idp1.force.cs.is.nagoya-u.ac.jp

Protein Structural Change DataBase

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1501
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112657831
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

idp1.force.cs.is.nagoya-u.ac.jp/pscdb/
supfam.org supfam.org

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/285
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q7395025
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

supfam.org/SUPERFAMILY/
spock.genes.nig.ac.jp spock.genes.nig.ac.jp

GTOP database

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/322
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112657039
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

spock.genes.nig.ac.jp/~genome/
tstmp.enzim.ttk.mta.hu tstmp.enzim.ttk.mta.hu

.:TSTMP:.

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  narid:https://www.oxfordjournals.org/nar/database/summary/1937
  
  narCategory:Structure Databases
  
  Subcategory:Protein structure
  
  wd:https://www.wikidata.org/wiki/Q112657714
  
  wikidata Biodatabases nardb NARdb
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wikidata

nardb

NARdb

Biodatabases

Annotators

jeanete.moreno.manzano

URL

tstmp.enzim.ttk.mta.hu/
caps.ncbs.res.in caps.ncbs.res.in

SMoS V2.0 : Structural Motifs of Superfamilies

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1756
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112891797
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

caps.ncbs.res.in/SMoS2/
bitterdb.agri.huji.ac.il bitterdb.agri.huji.ac.il

BitterDB

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1482
  
  NARCategory: Structure Databases
  
  Subcategory: Small molecules
  
  WD: https://www.wikidata.org/wiki/Q4918969
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

bitterdb.agri.huji.ac.il/dbbitter.php
www.crystallography.net www.crystallography.net

Base de datos abierta de cristalografía

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1483
  
  NARCategory: Structure Databases
  
  Subcategory: Small molecules
  
  WD: https://www.wikidata.org/wiki/Q1142422
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

crystallography.net/
glytoucan.org glytoucan.org

Glycan Repository

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1905
  
  NARCategory: Structure Databases
  
  Subcategory: Carbohydrates
  
  WD: https://www.wikidata.org/wiki/Q112167863
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

glytoucan.org/
www.glycanstructure.org www.glycanstructure.org

glycanstructure.org | Glycan Modeling and Simulation

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1611
  
  NARCategory: Structure Databases
  
  Subcategory: Carbohydrates
  
  WD: https://www.wikidata.org/wiki/Q112180566
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

glycanstructure.org/fragment-db
psi-structuralgenomics.org psi-structuralgenomics.org

Synthetic Biology - The New Frontier Of Science • PSI-Structural Genomics

1
1. jeanete.moreno.manzano 04 Jul 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1260
  
  NARCategory: Structure Databases
  
  Subcategory: Protein structure
  
  WD: https://www.wikidata.org/wiki/Q112118618
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

psi-structuralgenomics.org/
Jun 2022
www.glycome-db.org www.glycome-db.org

GlycomeDB - The carbohydrate structures metadatabase

1
1. jeanete.moreno.manzano 28 Jun 2022
  
  in Public
  
  NARid: https://www.oxfordjournals.org/nar/database/summary/1905
  
  NARCategory: Structure Databases Subcategory: Carbohydrates
  
  WD: https://www.wikidata.org/wiki/Q112167863
  
  nardb NARdb Biodatabases wikidata
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Biodatabases

wikidata

NARdb

nardb

Annotators

jeanete.moreno.manzano

URL

glycome-db.org/