105 Matching Annotations
  1. Apr 2021
    1. Objective conclusions depend on the tree records being anaccurate representation of town vegetation.

      There is probably a lot of documentation on these pre-settlement trees around their resource purposes.

    1. The null hypothesis is that distributions of male and female trees will have no signifi cant relation to distinct suites of edaphic characters. Such a relation-ship would suggest evidence for environmental selection for sex in American persimmon (H 1 ).

      P>0.05

    2. in-creased proportions of leaky dioecy in the breeding systems of populations on or near ancient Native American population centers.

      Reminds me of the last article on ancient forest gardens.

    3. leaky dioecy was found in one species living on very poor soils in fragmented popula-tions

      Possibly a last ditch effort to reproduce? or the poor soils could also be another indication over anthropogenic overuse of that land.

    4. both seedles

      Could be the result of a gene that was historically favored / selected by humans. Seedless fruits are good for human consumption but not great for reproduction so it was likely a artificially selected trait rather than a naturally derived one.

    5. human infl uence that may have existed; however, perhaps not.

      I say not, if this species was cultivated and artificially selected than changes in things like fruit size could have had a beneficial impact for its wild consumers. This could have lead to increased animal consumption and seed dispersal, just a thought.

    6. the species is now viewed as a rare, weedy, wild fruit tree that is known primarily by hobbyists and wild harvesters

      The Native Americans had a different perspective and lifestyle than the Europeans that colonized the US. The value of this tree was likely lost along with most of the Native Americans. For example, Native Americans used the entire buffalo they killed but the Europeans unsustainably killed them for just their pelts. A lot of the true value of North American nature was lost after colonization.

    7. a close evolutionary relationship between D. kaki and D. virginiana

      There has likely been similar artificial selection performed on both species. They could also both share a common ancestor and were segregated by the formation of the Bering Strait.

    8. Persim-mon fruits have been cultivated for millennia and hold an important place in the diet and medicine chests of many cul-tures.

      I can imagine that all of artificial selection has changed the evolutionary path of persimmon fruits.

    1. ut was abandoned after the Maya cultural collapse around AD 1000.

      Wow so most of these forest gardens have been abandoned for over 1000 years and they still have a presence in the ecosystem. I think that this is significant in terms of how beneficial ancient agricultural practices must have been for the ecosystem. We could have probably learned a lot from the Maya people.

    1. Taxonomic circumscription at and below the species bound-ary can be as difficult technically

      The first thing that I thought of getting into this paper was the different sunfish species variation and hybridization in New England. It gets confusing when trying to identify the different species that I have caught around here.

    1. Three main processes affect the evolution of species: variation,channeled by constraints (e.g. historical, developmental ormechanical); differential survival, channeled by selection (e.g. asexerted by biotic and abiotic conditions; Pearce, 2011); and chance(evolutionary drift). However, despite the vast diversity of plantsthat has arisen through these processes, not all of the possiblephenotypic configurations are represented among extant plants.

      It seems like these main processes are accelerated and almost erratic in plants, possibly because of the characteristics of their gene flow?

    2. Despitetheincompleteness of Stebbins’ originaldataset, our analyseshighlight major, angiosperm-widetrends in the diversity of flower morphology and thereby demonstrate the power of thispreviously neglected approach in plant science

      So the goal of this study is to prove that morphospaces can be more useful, than previously thought, in pant science?

    1. pium poppy (Papaver somniferumL.), as one of thelongest utilized medicinal plants in human history, hasproduced both great benefits and great challenges forhuman civilization1.

      I have always been very curious about chemical receptors in our brains. Did we coevolve with some medicinal plants or can/could we naturally produce small amounts of chemicals, found in medicinal plants, in our body?

    2. n summary, the genome sequencing of Chinese opiumpoppy landraces expands the available genetic informa-tion for this valuable medicinal specie

      So this can help in the development in painkillers in terms of creating effective medicines that are less/not addictive. I'm also wondering if this could help with personalizing a drug for an individual? Personally I know that I am allergic to morphine, I get huge hives and it doesn't work as a painkiller for me.

  2. Mar 2021
    1. have led to the discovery of modern drugs

      It is interesting to think about how traditional medicines may have been discovered, probably a lot by accident. It also makes me think about the fine line between a specialized metabolite's ability to be medicinal or toxic. There are still probably a lot of compounds that are thought to be toxic or not useful but may just not be in the most ideal form or concentration. This type of work in the omics field is great because we will gain much more insight into the full function and potential of medicinal/useful plants.

    1. unusual phenomeno

      My thoughts exactly... this is probably of a result of the northern range limit having been previously glaciated. Maybe the higher genetic diversity is related to the colonization of this area and there has not been enough time for one or a few distinct genetic groups to arise. This also could be because of the habitat diversity of post glacial regions.

    2. Figure 3

      I really like this figure. I find it interesting that the largest census population size had a bit more than average genetic diversity and was the closest to the northeastern range limit. It seems that the populations in the middle of the range have the most variation in population size and genetic diversity.

    1. pollinators in pollination syndromesare thought to be more phylogenetically delimited thanplants

      Pollinators are more evolutionarily limited than the pollination species (plants).

    2. utualistic assemblages of floweringplants and their pollinators

      It would make sense that flowering plants and their pollinators would show a cophylogenic pattern. Being codependent I can imagine that they have evolved parallel to each other. There is probably increased interest in this because of the importance of pollinator species and the effects climate change / other environmental impacts have on them.

    1. Solidago (goldenrods), followed by Salix(willows), Symphyotrichum (American asters), and Vaccinium (blueberries)

      I would like to look further into these species.

    2. Overall, humid cold-temperate and warm continental climates with 71–200 cm of precipitation per year, average growing-season tempera-tures of 12–21 ºC, average annual extreme minimum temperatures of -40 ºC to -15 ºC, and relatively moist yet well-drained, acidic to neutral upland silts/loams foster species-dense and species-rich communities of native, endemic, exotic, and hybrid terrestrial, wetland, and aquatic plant species (USDA-NRCS 2014)

      Interesting to think of all of these different factors working together in a way that seems simple but they are all individually fairly complicated.

    3. Such recommendations can be inte-grated into pollinator-habitat management practices, and are broadly relevant for the Northeast and the adjacent regions in Canada

      So does this almost show species demographics/compositions over time?

    4. not all pollen is accessible or nutritionally suitable

      I have never thought about this, I have always just assumed that they could consume any pollen but it makes sense that is not the case.

    1. REDUCED MALE GAMETOPHYTE

      Are there benefits to this or is it just correlated to the reduction of the female gametophyte. Would this help the plant expend less energy and retain more water?

    1. (water lily

      I am very curious about the water lily lineage. Does it being semiaquatic have anything to do with why it was one of the first divergences amid the angiosperms?

    1. genetic differences between populations in differentregions suggest long separation through glacial intervals. In Asia,scattered distribution

      Interesting to consider intervals of barriers between populations.

    2. wind or germinate after passage through thedigestive tract of birds and other herbivores

      Maybe certain birds and animals contributing to distribution reduce the randomness of survival. Maybe the only stay within/ between similar habitats?

    3. Climate change and tectonic motion are thought as importantfactors driving species formation and differentiation

      Climate change has a major effect on dispersal and tectonic motion plays a role in segregation.

    4. fgene-10-00201March 12, 2019Time: 16:41# 6Zhang et al.Phylogeography ofSibbaldia procumbenss.l.FIGURE 1 |Distribution of haplotypes.(A)Haplotype distribution in Asia.(B)Haplotype distribution in North America and Europe [Modified according toAllen et al. (2015)].

      I think that they did a great job with this figure and I didn't find it to be too complicated.

    5. icariance and long-distance dispersal proposed to play importantroles in shaping intercontinental disjunctions

      This seems like chance w/ success be attributed to the randomness of dispersal + climate change. Long-distance seems random and its just by chance that they end up in a location that has a more favorable environment following climate change.

    6. The MAXENT analysis showedS. procumbenss.l. had a wider distributionrange during the last glacial maximum and a narrower distribution range during thelast interglacial, with predictions into the future showing the distribution range ofS. procumbenss.l. shrinking.

      I wonder if this can be related to GMT?

    1. The streamside -o-- iiiii anity.-Comniunities along streams, though mninor in total area, have a lush vegetation and rich flora

      Is this due to greater niche partitioning / available resources?

    2. Part of this greater pat- tern results from the vegetation remaining in a greater state of flux due to substrate instability (Griggs 1934, Hopkins and Sigafoos 1950) and in part to broader habitat tolerances, for some species occur both as pioneers and as constituents of stable tundra communitie

      Alpine soils are very similar to tundra soils. The instability of alpine habitats contributes to inconsistencies and mosaic patterns between alpine communities?

    3. The remainder of the alpine soils are referred to as Alpine Turf Soils, although there is con- siderable range in organic content of the A-hori- zon, ranging from 50 to 60% in the sedge meadow and some of the streamside soils to 20 to 30% in dwarf shrub heath-rush and snowbank community soils.

      The range in organic content could be due to the variations in gradients. There is an ambiguous range of what could be deposited on a mountain and where. I hypothesize that lower elevations have higher organic soil content.

    4. These higlh levels of atmospheric moisture, pre- cipitation, cloud cover, and fog with resultant lower temperatures, are important factors in the maintenance of the large Arctic element in the alpine flora. The climate, save for photoperiod, light intensity, CO2 tension, and wind, is similar to that of arctic stations in northern Canada and Alaska

      This is almost like an island effect and can explain some aspects of community patterns.

  3. Feb 2021
    1. Estimates of the lifespans of these trees serve as examples of thecomplex ambiguity that surrounds them.

      This ambiguity may just be scientist looking too deep. The life span of these trees could just be attributed to a successful life cycle. There could be no real explanation besides the fact that a short life span had no negative impact on the species. It makes me also think about if the tress just have an expiration date or some chemical is released that initiates death after some level of development?

    1. 82CHAPTER 4 evolution and diversity of vascular plantsSome species of Selaginella have strobili, with specialized sporophylls subtending the sporangia on a determinate shoot (Figure 4.14E).

      I find this especially interesting in terms of species living in vernal pools.

    1. The land plants, or embryophytes (also known as Embryophyta)

      Are there species of land plants that have evolved back into full and/or semi-aquatic morphologies/environments?

    2. The mosses, or Musci, are by far the most speciose and diverse of the three major groups of nonvascular land plants and inhabit a number of ecological niches.

      Could this be because they are fairly hardy and can specialize with minimal morphological change?

    3. The first colonization of plants on land during the Silurian period, ca. 400 million years ago, was concomitant with the evolution of several important features.

      This is interesting when thinking about the changing atmospheric chemistry during this time.

    1. Extensive mitochondrial gene loss has alsobeen found in other species of mistletoe

      Gene loss makes sense in terms of evolution because why would a plant use energy on genes that are no longer necessary for its survival? I'm not sure if this is correct, just a thought. Would gene loss reduce energy expenditure in this circumstance?

    2. complex IV and ATP synthase were at least5-fold lower than in the non-parasitic model plantArabidopsis thaliana

      This makes sense because the parasitic plant is dependent on a host for a large portion of its energy consumption/production.

    3. In particular, thenadgenes encoding subunits ofrespiratory complex I are all absent and other pro-tein-coding genes are also lost or highly diverged insequence, raising the question what remains ofthe respiratory complexes and mitochondrial func-tions.

      I wonder if we would see similar effects in certain organisms that participating in symbiotic relationships?

    1. Phytochromes are red/far-red photoreceptors that regu-late seed germination, seedling de-etiolation, shade avoid-ance, and flowering time, and that modulate responses to pathogens, herbivores, gravity, and temperature (Frank-lin and Quail 2010; Kami et al. 2010).

      I find this very interesting. These photoreceptors for various light spectrums have become so specialized and essential throughout the life cycles of plants.

  4. Apr 2020
    1. Students of medicine may be daunted by the sheer range of mechanism-based medicine.

      In general, this really does seem like a challenging field with a near infinite number of outcomes.

    2. , “Nothing in biology makes sense except in the light of evolution.”53

      To fully understand something one must know its origin and be able conceptualize its development (evolution).

    3. Genome analysis is beginning to uncover the genetic basis for these distinctive Homo phenotypes

      It seems like the more evolved and complicated a genome is, the greater the risk of complication.

    4. Genes for other parts of the human body have a much more recent evolutionary origin and, correspondingly, have been shaped by far fewer selection events.

      I feel that human sexual selection and reproductive success has strayed from being fitness based and has become more complicated and emotional.

    5. Such genes are fixed parts of the genome and include metabolic genes, which had their origin between 1.6 and 3.9 billion years ago

      I seems that newer, more finite genes are more susceptible to alterations that are negative or less beneficial for survival. I think that this is because of our more recent evolution and human's modern natural selection.

    6. A genome necessarily includes all protein-coding genes together with other functional and nonfunctional DNA elements that interact as an integrated entity that is vertically transmitted between generations

      While there are many environmental contributors to illnesses, at a molecular level, there are also many genetic pre-disposals that have been passed down over time.

    7. Evolutionary medicine views patients as individuals whose history has unfolded over the course of an entire life cycle,

      This is good because evolutionary medicine covers many in-depth aspects of potential illnesses.

    8. Among its important contributions is a demonstration — through a greater understanding of the human genome and the microbiome — that evolutionary biology underpins the principles and practice of medicine.

      I get this because most things that go on with our bodies come down to genetic coding. This means that illnesses and vulnerabilities also can be traced down to genetic code.

    1. The new studies are truly fascinating, but they seem to pose more questions than answers.

      I think that the specifics of peopling the Americas is almost untraceable.

    2. “Analyzing the DNA of 49 ancient human remains across Central and South America spanning between 11,000 and 3,000 years ago, we learned that multiple population movements are necessary to explain ancient as well as present-day Central and South America gene pool.”

      In my opinion, it would make sense that there would be multiple waves of different populations migrating into the Americas between 11,000-3,000 years ago. If there really was only one main entry point to the Americas, it is highly unlikely that there was only one main migration of one main population of closely related individuals.

    3. “Looking at the bumps and shapes of a head does not help you understand the true genetic ancestry of a population—we have proved that you can have people who look very different but are closely related.”

      Molecular biology has helped the progression of the study of evolutionary biology for many species. One small change in genetic code can created different phenotypes that look very different even if the two individuals are very closely related. This made me think of two siblings that look very different but have the same parents.

    4. “If we assume that the migratory route that brought this Australasian ancestry to South America went through North America, either the carriers of the genetic signal came in as a structured population and went straight to South America where they later mixed with new incoming groups, or they entered later,

      I think that the population of the Americas is much more complicated than we know. I think that maybe we should consider some less likely but possible entrance routes.

    5. genetic marker

      I wonder if the people on North Sentinal Island have any significant genetic markers. They have lived on the island with no outside contact for about 55,000 years.

    6. These groups moved rapidly and unevenly, sometimes interbreeding with local populations, complicating the genetic—and historical—picture even further.

      The migratory society of these times must make it very challenging to track original migrant lineages.

    7. Eventually, this population found itself south of a massive ice sheet covering North America from coast to coast.

      I find the geographic changes of North America over the past 20,000 years interesting.

    1. We anticipate an exciting proliferation of re-search on urban evolution over the next decade

      This is expected especially with the growing number of cities and increasing population. I would like to see some more studies on urban evolution across cities, varying in area and building / population densities, in the same region.

    2. Park andwoodland habitats become increasingly fragmented

      I would like to look into species living in the forested habitats that are linearly fragmented between two opposing sides of a highway.

    3. Urbanizationdoes not impede gene flow among populationsof a globally rare butterfly endemic to barrierislands of coastal North Carolina, United States,but dispersal is restricted by major natural land-scape features such as open water

      Interesting concept but kind of self explanatory.

    4. all exhibited lower genetic diversity and greatergenetic structure than those of populations inless urbanized areas.

      I get that. In most cases urban environments are very diverse in habitat structure where forests are more consistent across an environment. In order to adapt to a more diverse habitat (urban) a population will express greater genetic diversity.

    5. Urbanization can cause suchreductions in multiple ways, including (i) the lossof natural habitat caused by fragmentation, (ii)founder effects associated with the establish-ment of new urban populations, and (iii) sever

      Whoops I had this exact thought in a previous annotation...

    6. Mutation, genetic drift, gene flow,and natural or sexual selection can all influenceallele frequencies in urban populations.

      I feel like urbanization can also result in habitat fragmentation, population segregation, and divergence of phenotypic traits.

    7. In a similar way, understandingevolution in urban areas can lead to improvedhuman health.

      I feel like urbanization can also have the opposite effect and degrade human health because of overcrowding, disease, poverty(economic diversity), and pollution.

    8. These environmental changesbrought by global urbanization are creatingnovel ecosystems with unknown consequencesfor the evolution of life.

      This is a very interesting concept to me because it has many adverse effects of different species. Some species my develop niches and succeed in urban environments while others may perish having not stood a chance. I have noticed that smaller species are the most capable of adapting to urban environments.

    1. Darwin did not clearly identify the evolution of female choice

      The question of how female choice evolved makes me very curious. I wonder if the differences in hormones between males and females were the driver of this.

    2. If all offspring are equal with respect to fitness, then numerical counts of offspring are sufficient for the measurement of sexual selection

      This would be true but all offspring are very rarely equal in terms of fitness.

    3. sexual selection acts more strongly on females than on males,

      I wonder if there is natural selection for the ability to make an effective selection determination for a male in females.

    4. In some species, the males appear to provide nothing to the females but sperm, yet they have elaborate ornaments for which females show preferences (Taylor and Williams, 1982; Reynolds and Gross, 1990; Kirkpatrick and Ryan, 1991; Kokko et al., 2003). These systems are especially perplexing from a sexual selection standpoint because the benefits of choice are not at all obvious.

      While the benefits of the choices based on elaborate ornaments are not obvious, they may be underlying indicators of overall fitness as mentioned in Cantarero et al.

    5. But why would female preferences exist in the first place?

      I can see how there would be preferences by both sexes but I don't understand what makes selection preference seem greater in one sex more than the other, depending on the species.

    6. female buttonquail (genus Turnix) fighting like gamecocks for reproductive access to the males

      Its interesting to see females behaving in such a competitive manor. Usually the males are the more competitive sex but this shows that sexual selection can be more complicated and that the roles can be reversed.

    7. “sexual selection arises from differences in reproductive success caused by competition for access to mates”

      This makes me consider variation between individuals in a population.

    8. students of evolutionary biology would be well advised to revisit his works.

      Darwin's work is absolutely still relevant to modern evolutionary biology. His work was fairly accurate and it also is good insight into the development of what we know today about evolutionary biology.

    9. First, why does mate choice evolve at all? And second, what factors determine the strength of mate choice (or intensity of sexual selection) in each sex?

      This is a good question but I don't think that there is a single good answer to it. I believe that the evolution of mate choice and intensity of sexual selection varies greatly by species and intra-specific interactions within an ecosystem.

  5. Feb 2020
    1. In the first place, varieties, even strongly-marked ones, though having somewhat of the character of species--as is shown by the hopeless doubts in many cases how to rank them--yet certainly differ far less from each other than do good and distinct species. Nevertheless according to my view, varieties are species in the process of formation, or are, as I have called them, incipient species. How, then, does the lesser difference between varieties become augmented into the greater difference between species? That this does habitually happen, we must infer from most of the innumerable species throughout nature presenting well-marked differences; whereas varieties, the supposed prototypes and parents of future well-marked species, present slight and ill-defined differences. Mere chance, as we may call it, might cause one variety to differ in some character from its parents, and the offspring of this variety again to differ from its parent in the very same character and in a greater degree; but this alone would never account for so habitual and large a degree of difference as that between the species of the same genus.

      Here I believe Darwin bring up a key point in how there can be changes in a offspring's phenotype from the parents. This can happen to the point of becoming a new species even when the parents appear to share the same phenotype. It shows that there are many more factors that come into play than that meets the eye in evolution.

    2. Under such circumstances the swiftest and slimmest wolves have the best chance of surviving, and so be preserved or selected, provided always that they retained strength to master their prey at this or some other period of the year, when they were compelled to prey on other animals. I can see no more reason to doubt that this would be the result, than that man should be able to improve the fleetness of his greyhounds by careful and methodical selection, or by that kind of unconscious selection which follows from each man trying to keep the best dogs without any thought of modifying the breed. I may add that, according to Mr. Pierce, there are two varieties of the wolf inhabiting the Catskill Mountains, in the United States, one with a light greyhound-like form, which pursues deer, and the other more bulky, with shorter legs, which more frequently attacks the shepherd's flocks.

      I find this very important when it comes to survival of the fittest, crossing, as well as niche development. This explains how the fittest of wolves that can go the longest without eating / that can feed on the largest variety of pray have the greater chances of survival. Those who cannot survive as long without eating and / or do not diversify on their pray will die off and not pass on their genes, where the more fit individuals will. But there are circumstances where crosses between fit and less fit individuals can create a moderately fit individuals that find new niches to survive like praying on farmers easy to catch (contained / condensed) live stock.

    3. The tuft of hair on the breast of the wild turkey-cock cannot be of any use, and it is doubtful whether it can be ornamental in the eyes of the female bird; indeed, had the tuft appeared under domestication it would have been called a monstrosity.

      I think that this perfectly captures some explanation behind sexual selection. Some specific phenotypic traits of an organism can be more likely to attract the opposite sex and therefore make them more likely to pass on their genes. On the other hand some of these phenotypic traits have no physical benefit at all and in some cases can even make them more vulnerable it ways. This shows that there is a trade off between fitness and the ability to pass on genes via sexual selection. In the eyes of humans some phenotypic traits passed on by sexual selection can be deemed as useless.

    4. Can the principle of selection, which we have seen is so potent in the hands of man, apply under nature? I think we shall see that it can act most efficiently.

      I like how Darwin expresses how well nature preforms natural selection while keeping in mind that humans have become as, if not more efficient at selection. I believe that humans could become better at selection in terms of benefit for the natural environment, if that's what they had in mind. Unfortunately, I think that humans tend to select for our own benefit rather than the benefit of the natural world.

  6. Jan 2020
    1. It's hard to overstate evolutionary biology's power to explain the living world and our place in it.

      I find this to be a very strong statement because evolutionary biology contains many great insights into how our modern natural world has come to exist. If we look deeper into evolutionary bio. we can use its ability to "explain the living world and our place in it" find more solutions to many of our current problems. Sustainability, medicine, ...etc. are just a couple fields that can be better understood when looking into "evolutionary biology's power".