259 Matching Annotations
  1. Jan 2024
    1. missionstatement

      guiding reason as to what the org. does and why it exists

    2. stakeholders

      interest group (financial)

    3. benefit corporation (B corporation)

      social and env. goals ahead of shareholder wealth maximization

    4. gency problem

      managers are separate from the owners

      • managers will act in interest of self and not the owners
    5. transparency,

      clarity/openness

    6. community benefits

      services provided to covered population

    7. Schedule H

      specific addendum for hospitals for Form 990

    8. Form 990

      form that reports on charitable activites

    9. residual earnings

      money left after everything has been paid

    10. privately held company

      for profit --> no stocks

    11. publicly held companies

      for profit --> owned by a large number of share holders

    12. tockholders (shareholders

      owners of part(s) of the business/entity

    13. hybrid form

      LLP is an example

      limited liability partnership

    14. S corporation

      different tax = s corp

    15. C corporation.

      C = standard

    16. iquid investment

      cash

    17. for-profit corporation

      for-profit --> separate from the owners and managers

      corporation

    18. partnership

      two + people

    19. proprietorship (or sole proprietorship)

      sole proprietorship => one person

    20. professional liability

      organization takes responsibility for those who provide care within that organization

    21. cost-containment programs

      budgets for approval each year ---> ensuring that the cost is kept manageable

    22. licensure

      certificate of allowance for the healthcare professionals

    23. patient captureThe concept that oncea patient enters thesystem (e.g., a doctor’soffice), all servicesneeded by that patientshould be provided inthe system

      patient capture = all services needed by the patient should be provided by that system once the patient enters the system

    24. Long-term care consists of healthcare (and some personal care) services provided to indi-viduals who lack all or some functional ability, specifically in the activities of daily livingsuch as eating, bathing, and locomotion.

      long-term care ==> individuals who lack some/all/most functionality

    25. Ambulatory (outpatient) care encompasses services provided to patients who are not admit-ted to a hospital or nursing home

      outpatient = encompasses services provided to patients not admitted to a hospital

    26. investor-owned hospital, also known as the for-profit hospital

      investor owned = for-profit

    27. 70 percent of all privatehospitals (57 percent of all community hospitals) are not-for-profit entities (AHA 2021).

      70% of all private hospitals are not-for-profit?

    28. charitable origins

      not sure if I believe this

    29. private not-for-profit hospital is a nongovernmental entity organized for thesole purpose of providing inpatient healthcare services

      Private not for profit hospital

    30. The category of government hospital, which makes up about 19 percentof all hospitals, is broken down into federal and public (nonfederal) entities (AmericanHospital Association [AHA] 2021).

      gov. hospital

      interesting

    31. The Joint Commission (previously calledthe Joint Commission on Accreditation of Healthcare Organizations). Joint Commissionaccreditation is a voluntary process intended to promote high standards of care.

      high standards of care ---> how does it balance the need to make money with the desire to provide quality care for patients

    32. Those that were linked tended to be part of a horizontal system,which controls a single type of healthcare facility, such as a group of hospitals or nursinghomes. Recently, however, many healthcare organizations have created a vertical system,which controls two or more related types of providers, such as medical practices, hospitals,and nursing homes.

      horizontal - owns a single group of similar providers

      vertical - related but not the same providers

    33. comptrolle

      finance department who handles accounting, budgeting, and reporting activities

    34. costs, cash, capital, and control

      the four cs 1. costs 2. cash 3. capital 4. control

    Annotators

  2. Oct 2023
    1. Miroand TRAK proteins act as adaptors that link kinesin-1 and dynein, aswell as myosin of class XIX (MYO19), t

      miro and trak link kinesin-1 and dynein and mysosin 19

    Annotators

    1. Assays were performed with0.6 mM total lipids at a 1:2 labeled/unlabeled ratio. For all assays,proteoliposomes were mixed with A100 buffer containing 5 mMMgCl2, and then pre-incubated at 37°C for 5 min in a 96-wellplate. Following pre-incubation, the plate was placed in a Sparkplate reader (Tecan), two baseline readings were taken, and then2 mM GTP or A100 buffer of equal volume was added with amultichannel pipette. For 60 min NBD dequenching was moni-tored at 10 s intervals (excitation at 460 nm, dequenching at 538nm). Maximum possible dequenching was determined after60 min via the addition of 0.5% Anapoe X-100, with two morecycles read on the plate reader after Anapoe addition. Fmax wascalculated by taking the average of these two post-Anapoe cy-cles. Fusion calculations were performed using the functionFusion  Fluorescence observed−Initial fluorescence observedF max × 100. In instanceswhere initial kinetics were extremely rapid and the first readingpost-GTP addition was not representative of time zero, the aver-age of two readings taken immediately before GTP addition wasused to calculate initial fluorescence observed. This difference incalculation of initial fluorescence was used for ATL3 at 1:300 andATL2 1-547 at 1:500

      assay description

    2. with ATL3having the lowest rate, but converging to a similar rate athigher enzyme concentrations

      higher concentrations --> acts like the other two atl s

    3. However, due to thelower dimer affinity of ATL3 relative to that of ATL2, the GTPaserates diverge when compared at lower protein concentrations.

      atl3 has a lower dimer affinity ==> higher concentrations can be used to overcome that

    4. It should be noted that the lack of C-terminal autoinhibitionin ATL3 does not rule out the possibility of ATL3 regulation byother means

      there are other means of regulation for atl3

    5. The lack of autoinhibition in ATL3 and a corresponding lackof autoinhibition in the single Drosophila ortholog leads us tospeculate that having at least one constitutive form of ATL mightbe beneficial to cells and to organisms.

      having one constitutive form could be beneficial to the organisms bc it will not be inhibited and it will keep er structure and function proceeding as normal

    6. Second, an in-depth phylogenetic analysis reveals that C-terminal auto-inhibition in ATL1 and ATL2 are recent innovations that likelyarose independently during the diversification of vertebrates

      the autoinhibitory properties of atl1 and atl2 are likely new innovations and probably arose independently

    7. Our findings herein support a model in which C-terminal au-toinhibition of human ATL1/2 fusion activity is not a core con-served feature of the ATL mechanism but more likely aregulatory adaptation

      believe the second model to be correct

      autoinhibitory behavior was not present at first and then developed in atl1 and atl2

    8. (model 1) ancestral autoinhibition, followed byindependent losses of autoinhibition in ATL3 and in ATLi;(model 2) lack of autoinhibition in the ancestor with recent in-dependent gains of autoinhibition in ATL1 and ATL2; or (model3) lack of ancestral autoinhibition, gain of autoinhibition in thevertebrate ancestor, and a later loss in ATL3
      1. loss of autoinhibition of atl3 and atli
      2. development of autoinhibition in atl1 and atl2
      3. gain in all three and then loss in atl3
    9. indicates that ATL1/2/3 arose throughtwo duplications at the base of the vertebrate lineage, with ATL1branching first and a subsequent duplication leading to ATL2and ATL3, in line with the more recently reported phylogeny(Neufeldt et al., 2019). Significantly, ATL3, which altogetherlacks autoinhibition, and ATL2, the most strongly autoinhibitedparalog (Crosby et al., 2022), are sister taxa, while ATL1 andATL2, the two paralogs that exhibit autoinhibition, are not (Figs.5 C and S4 A); thus, the presence or absence of autoinhibitiondoes not appear to correlate with the overall evolutionary rela-tionship between paralogs. Based on the gene tree, the presenceand absence of autoinhibition in the canonical ATL paralogscould be most parsimoniously explained by three distinctmodels

      atl1 branched leading to a duplication --> lead to atl2 and atl3

      there are three different models to simply explain this relationship

    10. C-terminal autoinhibition seen in ATL1/2 (Crosby et al., 2022)might represent a vertebrate specialization rather than a core-conserved feature of the ATL fusion machinery. Deciphering theevolutionary history of C-terminal autoinhibition would shedlight on this hypothesis but would require an understanding ofthe phylogeny of the ATLs and their C-termini.

      since atl3 do not have autoinhibitory hardware at their c terminus --> it is likley that this autoinhibitory thing arose independently in atl1 and atl2

    11. When ATL3 was incor-porated at either two- or approximately threefold higher pro-tein/lipid ratios of 1:500 or 1:300, respectively, it catalyzedfusion at dramatically higher initial rates

      increase atl3 concentration --> its rate of catalysis increases substantially

    12. To further demonstrate that the ATL3 C-terminal extensionlacks an autoinhibitory activity, an ATL2/3 chimera was con-structed. As anticipated, replacing the C-terminal extension ofATL2 with that of ATL3 resulted in an ATL2/3 chimera thatlargely lacks autoinhibiti

      !!!

      highlights that atl3 c terminus lacks an autoinhibatory activity

    13. trikingly, ATL3truncation had no effect on the fusion rate (Fig. 3 B) and nosignificant effect on GTPase activity when measured under thesefusion conditions

      when they truncated atl3 --> there was no change on the rate of fusion ==> ie. there c terminus doesn't really play a huge role in atl3

    14. In contrast to ATL1/2, there appear to be nodocumented C-terminal variants of ATL3.

      atl3 has no documented c terminus variants

    15. Thus, when introducedexogenously into ATL1/2/3 KO cells as the sole source of ATL,ATL3 can restore and maintain a normal ER network.

      when atl1 and 2 missing --> atl3 can restore and maintain a normal ER network on its own

    16. Fusion by ATL3 was also disrupted by a I503Dmutation, similar to the block by an equivalent I507D mutation

      fusion of atl can be disrupted by point mutations

    17. We purified His-tagged human ATL3 from a transiently trans-fected HEK293-derived suspension cell line

      purified his-tagged ATL3

      • fluorescence and measured rate of lipid mixing
    18. R membrane fusionfunction for ATL3 that, unlike ATL1/2, is most likely constitu-tive.

      atl3 is continually present whereas atl1 and atl2 are not

    19. we find that ATL3 altogether lacks theC-terminal autoinhibition observed for ATL1/2

      atl3 lack the autoinhibitory portion of the c terminus that is present in atl1 and atl2

    20. Despite substantial advances using DATL, reconstitution offusion activity by the human ATLs had proved refractory untilrecently, when our lab demonstrated that ATL1/2 expressed andpurified from HEK cells, rather than E. coli, has robust fusionactivity

      when atls had been expressed in human embryonic kidney cells they had robust fusion activity

      when they were synthesizes in e coli --> they did not have such robust activity (likely bc the bacteria processes the gene differently)

    21. Notably, while Drosophila andinvertebrates in general appear to have a single ATL, humanshave three paralogs (ATL1-3) that are broadly important forhuman health, with mutations in ATL3 causing hereditary sen-sory neuropathy

      drosophila --> 3 atl

      humans --> 1 atl

      atls are super important for human health --> a mutation in atl3 can cause neuropathy

    22. ith the absence of ATL causingdisruptions to ER structure in both insect and mammalian cells

      no atl present --> cause disruption to the ER structure in insect and mammalian cells

    23. two of the three human ATL paralogs

      three human ATL paralogs ==> 2/3 of them are autoinhibited

      the third is thought to promote constitutive ER fusion and lacks any c terminus autoinhibition (as seen in Drosophilia M.)

      atl 1 and 2 likley evolved as a way to upregulate fusion activity in the ER on demand

    24. Homotypic membrane

      Homotypic fusion ==> same type of membrane fusing togehter

      catalyzed by ATL GTPase for ER membrane fusion

    Annotators