- Nov 2024
-
atlas.nomic.ai atlas.nomic.ai
- Oct 2024
-
thesiswhisperer.com thesiswhisperer.com
- Jun 2024
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
www.cell.com www.cell.com
-
BIOnombres
-
- Feb 2024
-
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
-
-
BIOredes
Tags
Annotators
URL
-
-
resjournals.onlinelibrary.wiley.com resjournals.onlinelibrary.wiley.com
-
BIOcienciaAbierta
-
-
zookeys.pensoft.net zookeys.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
- Nov 2023
-
openalex.org openalex.org
-
IndexaPubMed
-
-
notas.niboe.org notas.niboe.org
-
lma
Tags
Annotators
URL
-
-
www-sciencedirect-com.pbidi.unam.mx:2443 www-sciencedirect-com.pbidi.unam.mx:2443
-
ArtículosGeniales
PCM
Presentación
NOTA: artículo científico basado en películas de James Bond
-
- Oct 2023
-
www.ebi.ac.uk www.ebi.ac.uk
-
MapeoBIOntologías
IDpaper:202336
-
-
www.profesionaldelainformacion.com www.profesionaldelainformacion.com
-
RevistaBIOinformacion
-
-
revista.profesionaldelainformacion.com revista.profesionaldelainformacion.com
-
RevistaBIOinformación
-
-
academic.oup.com academic.oup.com
-
IDpaper:202351
BIOnomenclatura
El uso de nombres de organismos como elemento de metadatos universal para vincular e integrar datos sobre biodiversidad en una variedad de fuentes de datos.
Está imagen está genial, puedo hacer una para algún tema biológico
-
-
bioone.org bioone.org
-
www.biotaxa.org www.biotaxa.org
-
BIOnomenclatura
-
-
academic.oup.com academic.oup.com
-
academic.oup.com academic.oup.com
-
BIOnomenclatura
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
BIOnomenclatura
-
-
kiharalab.org kiharalab.orgNaviGO1
-
GeneOntology
AnotadorBIOinformación ?
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
BIOanotaciones
Tags
Annotators
URL
-
-
geneontology.org geneontology.org
-
Esta herramienta la debieran conocer todos los que hacen investigación sobre biociencias
BIOanotaciones
Tags
Annotators
URL
-
-
www.informatics.jax.org www.informatics.jax.org
-
BIOanotaciones
-
-
r.omnipathdb.org r.omnipathdb.org
-
BIOanotaciones
-
-
-
BIOanotaciones
-
-
-
BiologymetricsCOVID
-
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
code.google.com code.google.com
-
BIOanotacion
-
-
www.sciencedirect.com www.sciencedirect.com
-
BIOanotacion
-
-
www.uniprot.org www.uniprot.org
-
BIOanotacion
-
-
sites.google.com sites.google.com
-
BIOanotacion
-
-
sites.google.com sites.google.com
-
BIOntologiaEcologia
-
-
manual.omicsbox.biobam.com manual.omicsbox.biobam.com
-
www.fao.org www.fao.org
-
bioportal.bioontology.org bioportal.bioontology.org
-
BIOanotador
-
-
ecoportal.lifewatch.eu ecoportal.lifewatch.eu
-
BIOanotador
-
-
bioportal.lirmm.fr bioportal.lirmm.fr
-
BIOanotador
-
-
ontobee.org ontobee.orgOntobee1
-
BIOanotador
-
-
ontofox.hegroup.org ontofox.hegroup.orgOntofox1
-
BIOanotador
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
BIOanotaciones BIOmineria
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
www.ebi.ac.uk www.ebi.ac.uk
-
BIOanotacion
-
-
www.sciencedirect.com www.sciencedirect.com
-
BIOanotacion
-
-
www.bioontology.org www.bioontology.org
Tags
Annotators
URL
-
-
journals.plos.org journals.plos.org
- Sep 2023
- Aug 2023
-
onlinelibrary.wiley.com onlinelibrary.wiley.com
-
MariposasBIOcolores
ModeladoAlasMariposa
SinAcceso
LepidopteraBIocolores
PlanEstructural
Seminal
Este es un buen ejemplo para hacer análisis de citas
-
-
opg.optica.org opg.optica.org
-
MariposasBIOcolores
ModeladoAlasMariposa
Tags
Annotators
URL
-
-
www.scielo.org.bo www.scielo.org.bo
-
BIologiaDigital
-
-
www.biodiversitylibrary.org www.biodiversitylibrary.org
-
LoboMarino
Tags
Annotators
URL
-
-
www.biodiversitylibrary.org www.biodiversitylibrary.org
-
LoboMarino
En este autor se baso Shaw para describir en 1800 la especies
-
-
ouci.dntb.gov.ua ouci.dntb.gov.ua
-
LoboMarino
Tags
Annotators
URL
-
-
resolver.globalnames.org resolver.globalnames.org
-
BIOnombres
Synopsis Scientific names are critical metadata elements in biodiversity. They are the scaffolding upon which all biological information hangs. However, scientific names are imperfect identifiers. Some taxa share the same name (e.g. homonyms across nomenclature codes) and there can be many names for the same taxon. Names change because of taxonomic and nomenclatural revisions and they can be persistently misspelled in the literature. Optical scanning of printed material compounds the problem by introducing greater uncertainty in data integration.
This resolution service tries to answer the following questions about a string representing a scientific name:
Is this a name? It is spelled correctly? Is this name currently in use? What other names are related to this name (e.g. synonyms, lexical variants)? If this name is a homonym, which is the correct one? Matching Process 1. Exact Matching Submitted names are checked for exact matches against names in specified data sources or against the entire resolver database. If "resolve_once" is specified in the API, found names are immediately removed from the process instead of being resolved against all specified data sources. This significantly accelerates matching and can be used to discover if a string is in fact a name.
-
Exact Matching of Canonical Forms Name strings are often supplied with complex authorship information [e.g. Racomitrium canescens f. epilosum (H. Müll. ex Milde) G. Jones in Grout]. The Global Name parser strips authorship and rank information from names [e.g. Racomitrium canescens epilosum], which makes it possible to compare the string with other variants of the same name. Resulting canonical forms are checked for exact matches against canonical forms in specified data sources or in the entire resolver database. All found names are removed from the process at the completion of this step.
-
Fuzzy Matching of Canonical Forms Mistakes, misspellings, or OCR errors can create incorrect variants of scientific names. Remaining canonical forms generated from the previous step are fuzzily matched against canonical forms in specified data sources. We use a modified version of the TaxaMatch algorithm developed by Tony Rees. After this step all found names are removed from the process.
-
Exact Matching of Specific Parts of Names Some names are recognized by the parser as infraspecific names, which were not found during previous steps of the process. This may be because the name is unknown to the resolver database. Sometimes a 'junk' word is wrongly included and the parser may recognize it as an infraspecific epithet. The algorithm extracts specific canonical forms from names recognized as infraspecific and tries to match this subset of names against datasources or the entire resolver database. For example, "Pardosa moesta spider" will be cleansed and matched as "Pardosa moesta". All found names are removed from the process prior to proceeding to the following steps.
-
Fuzzy Matching of Specific Parts of Names Remaining names to be processed are fuzzily matched then removed.
-
Exact Matching of Genus Part of Names Remaining names in the process as well as all remaining binomial canonical forms are reduced to the genus part and matched against the data sources or the entire database.
Taxonomic Context If the "with_context" parameter is set to "true", the overall taxonomic group of all matched names is collected throughout the process. Scores for possible homonym matches are down-weighted if the resolved names do not belong to the overall taxonomic group of the queried list. If this is undesirable behavior, this parameter may be set to "false".
Confidence Score Matched names fall into several categories. For example, if the name Aotus gets perfectly matched as a plant genus, this may be incorrect if the queried name actually refers to a genus of monkey. Another example is poor fuzzy matching. The name Afina can be fuzzily matched to the genus Alina in the Order Lepidoptera. Matches of trinomial or binomial names have greater accuracy. Matching of authorship information further increases the likelihood of a correct match. However, different authorship does not always mean different taxonomic meaning. For example, Monochamus galloprovincialis (Olivier, 1795) and Monochamus galloprovincialis Secchi, 1998 both refer to the same species, where the former indicates the original author of the name and the latter is merely a reference to the name. The name resolver produces a "confidence score" to accommodate all these potential issues. The score is produced from a curvilinear plot of weighted decisions.
Confidence Score Graph We start at 0 on the x-axis and assign positive values for events that increase the probability score, and negative values to events that decrease it. For example, an exact match of a binomial name increases the probability significantly, so we adjust the slider 3 points to the right with a corresponding score of 0.988. However, if the authorship of the name did not get correctly matched, we adjust the slider 2 points to the left, to a corresponding score of 0.75. We try to map confidence level the with resulting scores. For example, 0.5 means neutral confidence whereas 0.99 mean high confidence.
Global Names Architecture| Global Names Recognition & Discovery| Global Names Integrated Taxonomic Editor
-
Tags
Annotators
URL
-
-
github.com github.com
-
BIOnombres
Tags
Annotators
URL
-
-
globalnames.org globalnames.orgNews1
-
BIOnombres
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
BIOnombres
Tags
Annotators
URL
-
-
journals.plos.org journals.plos.org
-
BIOnombres
Tags
Annotators
URL
-
-
www.sciencedirect.com www.sciencedirect.com
-
BIOnombres
-
-
zookeys.pensoft.net zookeys.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
-
zookeys.pensoft.net zookeys.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
-
journals.plos.org journals.plos.org
-
BIOnombres
Tags
Annotators
URL
-
-
bdj.pensoft.net bdj.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
BIOnombres
-
-
bmcecol.biomedcentral.com bmcecol.biomedcentral.com
-
BIOnombres
BIologiaDigital
-
-
academic.oup.com academic.oup.com
-
BIOnombres
-
-
zookeys.pensoft.net zookeys.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
-
zookeys.pensoft.net zookeys.pensoft.net
-
BIOnombres
Tags
Annotators
URL
-
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
BIOnombres
-
-
bmcecolevol.biomedcentral.com bmcecolevol.biomedcentral.com
-
BIOnombres
-
-
www.hindawi.com www.hindawi.com
-
BIOnombres
Tags
Annotators
URL
-
-
academic.oup.com academic.oup.com
-
BIOnombres
-
-
journals.ku.edu journals.ku.edu
-
BIOnombres
Tags
Annotators
URL
-
-
zenodo.org zenodo.org
-
BIOnombres
-
-
globalnames.org globalnames.org
-
BIOnombres
Tags
Annotators
URL
-
-
cshlpress.com cshlpress.com
Tags
Annotators
URL
-
-
www.frontiersin.org www.frontiersin.org
-
www.annualreviews.org www.annualreviews.org
-
www.nature.com www.nature.com
-
www.sciencedirect.com www.sciencedirect.com
-
bioone.org bioone.org
Tags
Annotators
URL
-
-
arep.med.harvard.edu arep.med.harvard.edu
-
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
-
link.springer.com link.springer.com
-
plato.stanford.edu plato.stanford.edu
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
www.nature.com www.nature.com
Tags
Annotators
URL
-
-
mitpress.mit.edu mitpress.mit.edu
-
Tags
Annotators
URL
-
-
www.taylorfrancis.com www.taylorfrancis.com
-
www.jstor.org www.jstor.org
Tags
Annotators
URL
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
www.jstor.org www.jstor.org
Tags
Annotators
URL
-
-
press.uchicago.edu press.uchicago.edu
-
onlinelibrary.wiley.com onlinelibrary.wiley.com
-
BIOanecdotas
-
-
europepmc.org europepmc.org
-
RequiereNormalizacion
En las anotaciones de SciLite requiere normalización para los carotenos, el plural y las mayúsculas generan sinónimos que no son reconocidos.
Chemicals carotenoids (5) carotenoid (2) Carotenoid (1)
-
- Jul 2023
- Jun 2023
-
-
DeliaGonzálezMarín
Tags
Annotators
URL
-
-
docs.google.com docs.google.com
-
docs.google.com docs.google.com
-
DeliaGonzálezMarín
-
-
docs.google.com docs.google.com
-
Le faltan el nombre de los autores y del evento
-
-
zenodo.org zenodo.org
-
cvlayla
Tags
Annotators
URL
-
- May 2023
-
onlinelibrary.wiley.com onlinelibrary.wiley.com
-
BIOinformacionEcologia
-
-
onlinelibrary.wiley.com onlinelibrary.wiley.com
-
BIOinformaciónEcología BIOinformaciónEvolución
-
- Feb 2023
-
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
sketchfab.com sketchfab.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
iubmb.onlinelibrary.wiley.com iubmb.onlinelibrary.wiley.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
-
-
www.nature.com www.nature.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
journals.plos.org journals.plos.org
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
bmcbioinformatics.biomedcentral.com bmcbioinformatics.biomedcentral.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
-
-
www.inspiritvr.com www.inspiritvr.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
-
-
www.biodigital.com www.biodigital.com
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
-
-
3dprint.nih.gov 3dprint.nih.gov
-
BIOgarabatos🌀 https://www.blogger.com/blog/post/edit/3916921080498993167/7575646852022724464
BIOmodelos3D
Tags
Annotators
URL
-
-
docs.google.com docs.google.com
-
JacquelineParedesSánchez
-
-
www.lluiscodina.com www.lluiscodina.com
-
ProyectosBioinformación
-
- Nov 2022
-
-
ReporteríaBioinformación
VisualizaciónBIOinformación
Tags
Annotators
URL
-
-
twitter.com twitter.com
-
LaylaMichánAguirre
lmichanCV⭐️Perfiles
-
-
github.com github.com
-
LaylaMichánAguirre lmichanCV/Perfiles
lmichanCV⭐️Perfiles
-
- Oct 2022
-
docs.google.com docs.google.com
-
drive.google.com drive.google.com7.gif1
-
LaylaMichánAguirre
YessicaGaliciaPérez
https://seh2bioinfo.netlify.app/posters/
-
-
-
SeminarioRevisiones
-
-
rcm-upr.libguides.com rcm-upr.libguides.com
-
SeminarioRevisiones
-
-
schema.org schema.org
-
CuraciónProductos
GestiónLABioinformación
DanielaParedesCrisanto
-
-
github.com github.com
-
SeminarioRevisiones
-
-
lmichan.github.io lmichan.github.io
-
el proyecto tiene como fin conocer, organizar y reunir las bases de datos indexadas en The NAR online Molecular Biology Database Collection y disponer las bases de datos en un formato amigable y público para que sean fácilmente encontradas y usadas por la comunidad que trabaja con biociencias, como investigadores, profesores, estudiantes y hasta curiosos.
Es tema
NubiaGetsemaníCasillasLópez
Tags
Annotators
URL
-
-
docs.google.com docs.google.com
-
MinervaMaríaRomeroPérez
🖍Mis notas
-
Es enorme el trabajo que has realizado, felicidades‼️
-
Está genial lo que están haciendo con los colibríes
-
Hoy vimos cómo poner colores a organismos en Wikidata @wikidata para hacer mapas de conocimiento usando SPARQL: 🐯Felinos 🐠Peces 🐎Caballos 🦚Colibríes
SeminarioBioinformacion
-
-
-
www.youtube.com www.youtube.com
-
SeminarioBIOinformación
-
-
-
LaylaMichánAguirre lmichanCV/Proyecto
Tags
Annotators
URL
-
-
github.com github.com
-
lmichanCV/Proyecto
-
-
docs.google.com docs.google.com
-
www.notion.so www.notion.so
-
MinervaMaríaRomeroPérez
-
-
www.zotero.org www.zotero.org
-
SeminarioRevisiones
-
-
docs.google.com docs.google.com
-
MinervaMaríaRomeroPérez
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
Tags
Annotators
URL
-
-
docs.google.com docs.google.com
-
ErickTrujilloOsegueda
ClubBIOinformacion
-
-
docs.google.com docs.google.com
-
SeminarioBioinformación
FernandoMoctezumaSoto
-
-
docs.google.com docs.google.com
-
drive.google.com drive.google.com
-
JuanManuelRomeroRojas
CluBioinformacion
-
-
www.youtube.com www.youtube.com
-
YessicaGaliciaPerez
Tags
Annotators
URL
-
-
www.canva.com www.canva.com
-
PaolaCastañedaCovarrubias
-
-
docs.google.com docs.google.com
-
LidiaGabrielaGarcíaGutiérrez LaylaMichánAguirre
-
-
www.evopaleo.com www.evopaleo.com
-
PaolaFloresMejía
Enproceso
-
-
github.com github.com
-
JoséVictorinoRuízLavida
-
-
-
JoséVictorinoRuízLavida
-
-
-
IxchelVanesaChávezGuerrero
Tags
Annotators
URL
-
-
github.com github.com
-
PaolaCastañedaCovarrubias
-
-
github.com github.com
-
JacquelineParedesSánchez
-
-
github.com github.com
-
JoséVictorinoRuízLavida
-
-
github.com github.com
-
JoséVictorinoRuízLavida
LaylaMichánAguirre
-
-
github.com github.com
-
LaylaMichánAguirre
lmichanCV/Proyecto
Tags
Annotators
URL
-
-
github.com github.com
-
GestionLABioinformación
LaylaMichánAguirre
lmichanCV/Proyecto
-
-
github.com github.com
-
LaylaMichánAguirre lmichanCV/Proyecto
-
-
github.com github.com
-
lmichanCV/Proyecto
-
-
www.scielo.org.mx www.scielo.org.mx
-
LaylaMichánAguirre
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
-
-
github.com github.com
-
LaylaMichánAguirre
-
-
twitter.com twitter.com
-
LaylaMichánAguirre
-
-
cemiegeo.org cemiegeo.orgCeMIEGeo1
-
www.youtube.com www.youtube.com
-
MinervaMaríaRomeroPérez
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
-
LaylaMichánAguirre
Tags
Annotators
URL
-
-
www.facebook.com www.facebook.com
-
LaylaMichánAguirre
-
-
www.youtube.com www.youtube.com
-
NubiaGetsemaniCasillasLópez
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
SaúlRicardoLópezCarreño
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
-
-
www.youtube.com www.youtube.com
-
YessicaGaliciaPérez
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
MinervaMaríaRomeroPérez
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
PaolaCastañedaCovarrubias
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
SeminarioRevisiones
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
Tags
Annotators
URL
-
-
-
BryanAliSalgadoConstantino
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
LaylaMichánAguirre
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
JoséVictorinoRuízLavida
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
JuanManuelRomeroRojas
Tags
Annotators
URL
-
-
-
SaúlRicardoLópezCarreño
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
-
JoséVictorinoRuízLavida
Tags
Annotators
URL
-
-
www.youtube.com www.youtube.com
Tags
Annotators
URL
-