On 2015 Jul 30, Keith Bradnam commented:

As of 2015, development of CEGMA v2 has ceased completely and we can no longer respond to support requests. While the latest version still runs, it should be pointed out that the underlying set of orthologs that CEGMA uses is based on the KOGs database that was published back in 2003. We would advise potential users of CEGMA to consider newer tools like BUSCO which perform a similar role, are easier to install, take less time to run, and which are based on more modern sets of orthologous genes. We don't rule out making a completely new version of CEGMA some day, but for now we consider CEGMA v2 an end-of-life product.

On 2015 Jul 30, Keith Bradnam commented:

As of 2015, development of CEGMA v2 has ceased completely and we can no longer respond to support requests. While the latest version still runs, it should be pointed out that the underlying set of orthologs that CEGMA uses is based on the KOGs database that was published back in 2003. We would advise potential users of CEGMA to consider newer tools like BUSCO which perform a similar role, are easier to install, take less time to run, and which are based on more modern sets of orthologous genes. We don't rule out making a completely new version of CEGMA some day, but for now we consider CEGMA v2 an end-of-life product.