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  1. May 2024
  2. www.biorxiv.org www.biorxiv.org
    Concerted neuron-astrocyte gene expression declines in aging and schizophrenia
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    1. scibot 03 May 2024
      RRID:SCR_016152

      DOI: 10.1101/2024.01.07.574148

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    biorxiv.org/content/10.1101/2024.01.07.574148v1
  3. Apr 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
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    1. scibot 10 Apr 2024
      RRID:SCR_016152

      DOI: 10.1038/s41467-024-47418-x

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    ncbi.nlm.nih.gov/pmc/articles/PMC10998864/
  5. Mar 2024
  6. www.nature.com www.nature.com
    Single-cell epigenomics reveals mechanisms of human cortical development
    1
    1. scibot 01 Mar 2024
      https://assets.nemoarchive.org

      DOI: 10.1038/s41586-021-03209-8

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    nature.com/articles/s41586-021-03209-8
  7. Feb 2024
  8. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
    1
    1. scibot 15 Feb 2024
      RRID:SCR_016152

      DOI: 10.1101/2023.12.18.572285

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    biorxiv.org/content/10.1101/2023.12.18.572285v1
  9. Jan 2024
  10. www.biorxiv.org www.biorxiv.org
    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
    1
    1. scibot 18 Jan 2024
      RRID:SCR_016152

      DOI: 10.1101/2023.12.18.572285

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    biorxiv.org/content/10.1101/2023.12.18.572285v1
  11. www.biorxiv.org www.biorxiv.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1101/2022.11.06.515349

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    biorxiv.org/content/10.1101/2022.11.06.515349v1
  12. www.science.org www.science.org
    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1126/science.adf0805

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    science.org/doi/10.1126/science.adf0805
  13. www.science.org www.science.org
    Transcriptomic diversity of cell types across the adult human brain
    1
    1. scibot 13 Jan 2024
      RRID:SCR_016152

      DOI: 10.1126/science.add7046

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    science.org/doi/10.1126/science.add7046
  14. Dec 2023
  15. www.nature.com www.nature.com
    Single-cell analysis of chromatin accessibility in the adult mouse brain
    1
    1. scibot 14 Dec 2023
      RRID:SCR_016152

      DOI: 10.1038/s41586-023-06824-9

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    nature.com/articles/s41586-023-06824-9
  16. www.nature.com www.nature.com
    The molecular cytoarchitecture of the adult mouse brain
    1
    1. scibot 14 Dec 2023
      SCR_016152

      DOI: 10.1038/s41586-023-06818-7

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    nature.com/articles/s41586-023-06818-7
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
    1
    1. scibot 09 Dec 2023
      Neuroscience Multi-omic Data Archive

      DOI: 10.1186/s13578-023-01120-5

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    ncbi.nlm.nih.gov/pmc/articles/PMC10546724/
  18. www.nature.com www.nature.com
    Molecular features driving cellular complexity of human brain evolution
    1
    1. scibot 09 Dec 2023
      nemoarchive

      DOI: 10.1038/s41586-023-06338-4

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    nature.com/articles/s41586-023-06338-4
  19. www.science.org www.science.org
    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
    1
    1. scibot 09 Dec 2023
      NEMO Archive

      DOI: 10.1126/science.adf3786

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    science.org/doi/10.1126/science.adf3786
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1038/s41594-023-01060-1

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    ncbi.nlm.nih.gov/pmc/articles/PMC10584685/
  21. www.science.org www.science.org
    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/science.adf6812

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    science.org/doi/10.1126/science.adf6812
  22. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/sciadv.adh1914

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    science.org/doi/10.1126/sciadv.adh1914
  23. www.science.org www.science.org
    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/sciadv.adf6251

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    science.org/doi/10.1126/sciadv.adf6251
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1007/s00018-022-04378-z

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    ncbi.nlm.nih.gov/pmc/articles/PMC9164190/
  25. www.biorxiv.org www.biorxiv.org
    A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity
    1
    1. scibot 09 Dec 2023
      RRID:SCR_016152

      DOI: 10.1101/2022.10.18.512442

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    biorxiv.org/content/10.1101/2022.10.18.512442v2
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
    1
    1. scibot 08 Dec 2023
      https://nemoarchive.org/

      DOI: 10.1101/2023.03.06.531121

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    ncbi.nlm.nih.gov/pmc/articles/PMC10081189/
  27. www.nature.com www.nature.com
    Identification of brain cell types underlying genetic association with word reading and correlated traits
    1
    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-uioqy8b

      DOI: 10.1038/s41380-023-01970-y

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    nature.com/articles/s41380-023-01970-y
  28. arxiv.org arxiv.org
    Untitled document
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    1. scibot 08 Dec 2023
      URL:https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/huma

      DOI: 10.48550/arXiv.2303.02498

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    arxiv.org/pdf/2303.02498.pdf
  29. www.biorxiv.org www.biorxiv.org
    A molecularly defined and spatially resolved cell atlas of the whole mouse brain
    1
    1. scibot 08 Dec 2023
      https://nemoarchive.org

      DOI: 10.1101/2023.03.06.531348

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    biorxiv.org/content/10.1101/2023.03.06.531348v1
  30. www.biorxiv.org www.biorxiv.org
    The cell type composition of the adult mouse brain revealed by single cell and spatial genomics
    1
    1. scibot 08 Dec 2023
      www.nemoarchive.org

      DOI: 10.1101/2023.03.06.531307

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    biorxiv.org/content/10.1101/2023.03.06.531307v2
  31. www.mdpi.com www.mdpi.com
    Cultured Mesenchymal Cells from Nasal Turbinate as a Cellular Model of the Neurodevelopmental Component of Schizophrenia Etiology
    1
    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-0rsydy7

      DOI: 10.3390/ijms242015339

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    mdpi.com/1422-0067/24/20/15339
  32. www.sciencedirect.com www.sciencedirect.com
    Generation of ventralized human thalamic organoids with thalamic reticular nucleus
    1
    1. scibot 08 Dec 2023
      https://data.nemoarchive.org/biccn/grant/u01_devhu/kriegstein/transcriptome/scell/10x_v2/human/processed/counts/

      DOI: 10.1016/j.stem.2023.03.007

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    sciencedirect.com/science/article/pii/S1934590923000784
  33. www.biorxiv.org www.biorxiv.org
    MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and Morphology
    1
    1. scibot 08 Dec 2023
      Neuroscience Multi-Omic Archive

      DOI: 10.1101/2023.04.03.535322

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    biorxiv.org/content/10.1101/2023.04.03.535322v1
  34. www.biorxiv.org www.biorxiv.org
    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
    1
    1. scibot 08 Dec 2023
      NeMO: https://nemoarchive.org/)

      DOI: 10.1101/2023.05.12.540037

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    biorxiv.org/content/10.1101/2023.05.12.540037v1
  35. www.nature.com www.nature.com
    Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
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    1. scibot 08 Dec 2023
      https://nemoarchive.org)

      DOI: 10.1038/s41556-023-01194-w

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    nature.com/articles/s41556-023-01194-w
  36. www.biorxiv.org www.biorxiv.org
    Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas
    1
    1. scibot 08 Dec 2023
      https://nemoarchive.org/.

      DOI: 10.1101/2023.07.26.550355

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    biorxiv.org/content/10.1101/2023.07.26.550355v1
  37. link.springer.com link.springer.com
    On Complexity and Emergence: Linking the Hypotheses of Pharmacoresistance in Epilepsy
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    1. scibot 08 Dec 2023
      https://nemoarchive.org/)

      DOI: 10.1007/978-3-031-36526-3_4

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    link.springer.com/chapter/10.1007/978-3-031-36526-3_4
  38. www.nature.com www.nature.com
    Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references
    1
    1. scibot 08 Dec 2023
      at https://assets.nemoarchive.org/dat-0rsydy7

      DOI: 10.1038/s41592-023-02003-w

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    nature.com/articles/s41592-023-02003-w
  39. www.biorxiv.org www.biorxiv.org
    Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS
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    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org/dat-jb2f34y.

      DOI: 10.1101/2023.10.02.560574

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    biorxiv.org/content/10.1101/2023.10.02.560574v1
  40. www.biorxiv.org www.biorxiv.org
    Sibling chimerism among microglia in marmosets
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    1. scibot 08 Dec 2023
      (https://assets.nemoarchive.org/dat-hsgdsgu

      DOI: 10.1101/2023.10.16.562516

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    biorxiv.org/content/10.1101/2023.10.16.562516v1
  41. www.nature.com www.nature.com
    Selective plasticity of fast and slow excitatory synapses on somatostatin interneurons in adult visual cortex
    1
    1. scibot 08 Dec 2023
      https://assets.nemoarchive.org

      DOI: 10.1038/s41467-023-42968-y

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    nature.com/articles/s41467-023-42968-y
  42. www.biorxiv.org www.biorxiv.org
    A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex
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    1. scibot 08 Dec 2023
      http://data.nemoarchive.org

      DOI: 10.1101/2023.11.28.569011

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    biorxiv.org/content/10.1101/2023.11.28.569011v1
  43. www.sciencedirect.com www.sciencedirect.com
    AKT Signaling Modulates Latent Viral Reservoir Viability in HIV-1-Infected Blood-Brain Barrier Pericytes
    1
    1. scibot 08 Dec 2023
      NeMO

      DOI: 10.1016/j.jbc.2023.105526

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    sciencedirect.com/science/article/pii/S0021925823025541
  44. dx.doi.org dx.doi.org
    Biallelic mutations in P4HTM cause syndromic obesity
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    1. scibot 08 Dec 2023
      RRID:SCR_016152

      DOI: 10.2337/db22-1017

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    dx.doi.org/10.2337/db22-1017
  45. www.sciencedirect.com www.sciencedirect.com
    Early Alzheimer’s disease pathology in human cortex involves transient cell states
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    1. scibot 08 Dec 2023
      RRID:SCR_016152

      DOI: 10.1016/j.cell.2023.08.005

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    sciencedirect.com/science/article/pii/S0092867423008590
  46. link.springer.com link.springer.com
    Uniform quantification of single-nucleus ATAC-seq data with Paired-Insertion Counting (PIC) and a model-based insertion rate estimator
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    1. scibot 08 Dec 2023
      RRID:SCR_016152

      DOI: 10.1038/s41592-023-02103-7

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    link.springer.com/article/10.1038/s41592-023-02103-7
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomics reveals human-specific cortical features
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    1. scibot 02 Dec 2023
      RRID:SCR_016152

      DOI: 10.1126/science.ade9516

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    ncbi.nlm.nih.gov/pmc/articles/PMC10659116/
  48. Nov 2023
  49. www.science.org www.science.org
    Interindividual variation in human cortical cell type abundance and expression
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    1. scibot 17 Nov 2023
      RRID:SCR_016152

      DOI: 10.1126/science.adf2359

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    Cortical VIP+ Interneurons in the Upper and Deeper Layers Are Transcriptionally Distinct
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
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    Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex
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    Purkinje cell outputs selectively inhibit a subset of unipolar brush cells in the input layer of the cerebellar cortex
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    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
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    Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
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    A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
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    A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types
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    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
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    Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
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    Explorers of the cells: Toward cross-platform knowledge integration to evaluate neuronal function
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    How many markers are needed to robustly determine a cell's type?
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  103. Oct 2021
  104. www.nature.com www.nature.com
    A multimodal cell census and atlas of the mammalian primary motor cortex
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    1. scibot 21 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03950-0

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @scibot

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    nature.com/articles/s41586-021-03950-0
  105. www.nature.com www.nature.com
    An atlas of gene regulatory elements in adult mouse cerebrum
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    1. scibot 21 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03604-1

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @scibot

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    nature.com/articles/s41586-021-03604-1
  106. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
    1
    1. scibot 14 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03465-8

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @scibot

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    nature.com/articles/s41586-021-03465-8
  107. www.nature.com www.nature.com
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
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    1. scibot 14 Oct 2021
      RRID:SCR_016152

      DOI: 10.1038/s41586-021-03500-8

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @scibot

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    nature.com/articles/s41586-021-03500-8
  108. Jul 2021
  109. www.nature.com www.nature.com
    Conserved cell types with divergent features in human versus mouse cortex
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    1. scibot 31 Jul 2021
      https://nemoarchive.org/

      DOI: 10.1038/s41586-019-1506-7

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @bandrow

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    nature.com/articles/s41586-019-1506-7
  110. Jun 2021
  111. www.nature.com www.nature.com
    Phenotypic variation of transcriptomic cell types in mouse motor cortex
    1
    1. scibot 05 Jun 2021
      http://data.nemoarchive.org/

      DOI: 10.1038/s41586-020-2907-3

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @bandrow

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    nature.com/articles/s41586-020-2907-3
  112. Mar 2021
  113. www.nature.com www.nature.com
    Joint profiling of histone modifications and transcriptome in single cells from mouse brain
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    1. scibot 03 Mar 2021
      RRID:SCR_016152

      DOI: 10.1038/s41592-021-01060-3

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @evieth

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    nature.com/articles/s41592-021-01060-3
  114. Feb 2021
  115. www.biorxiv.org www.biorxiv.org
    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
    1
    1. scibot 25 Feb 2021
      RRID:SCR_016152

      DOI: 10.1101/2020.05.10.087585

      Resource: NeMOarchive (RRID:SCR_016152)

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    biorxiv.org/content/10.1101/2020.05.10.087585v2
  116. Sep 2020
  117. link.springer.com link.springer.com
    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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    1. scibot 16 Sep 2020
      RRID:SCR_016152

      DOI: 10.1186/s40478-020-00908-7

      Resource: NeMOarchive (RRID:SCR_016152)

      Curator: @Naa003

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    link.springer.com/article/10.1186/s40478-020-00908-7