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  3. Jun 2026
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    Conserved Cell Type Signatures Across the Brainstem and Spinal Cord in the Mouse Central Nervous System
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  25. Sep 2025
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  31. Jul 2025
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  35. Jun 2025
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  41. Sep 2024
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  43. Aug 2024
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  50. May 2024
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  52. Apr 2024
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  54. Mar 2024
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  56. Feb 2024
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  63. Dec 2023
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    Early Alzheimer’s disease pathology in human cortex involves transient cell states
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    Uniform quantification of single-nucleus ATAC-seq data with Paired-Insertion Counting (PIC) and a model-based insertion rate estimator
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  97. Nov 2023
  98. www.science.org www.science.org
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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  100. Oct 2023
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    A marmoset brain cell census reveals regional specialization of cellular identities
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    Comparative transcriptomics reveals human-specific cortical features
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  105. Sep 2023
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    Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
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    Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections
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  108. Aug 2023
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    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
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  110. Jul 2023
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    Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
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    A guide to the BRAIN Initiative Cell Census Network data ecosystem
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  113. May 2023
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    Dense functional and molecular readout of a circuit hub in sensory cortex
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  115. Feb 2023
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    The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
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  117. Jul 2022
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    Evolutionary innovations of human cerebral cortex viewed through the lens of high-throughput sequencing
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  119. Jun 2022
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    Cortical VIP+ Interneurons in the Upper and Deeper Layers Are Transcriptionally Distinct
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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  122. May 2022
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  124. www.biorxiv.org www.biorxiv.org
    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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  125. Apr 2022
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    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
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    Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex
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    DNA methylation atlas of the mouse brain at single-cell resolution
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  129. www.nature.com www.nature.com
    Epigenomic diversity of cortical projection neurons in the mouse brain
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  130. elifesciences.org elifesciences.org
    Purkinje cell outputs selectively inhibit a subset of unipolar brush cells in the input layer of the cerebellar cortex
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    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
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    Benchmarking atlas-level data integration in single-cell genomics
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    A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq
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    Cell-type-specific 3D epigenomes in the developing human cortex
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    Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor
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    UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
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    Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
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    Robust and annotation-free analysis of alternative splicing across diverse cell types in mice
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    Enhancer viruses for combinatorial cell-subclass-specific labeling
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    A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
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    A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types
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    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
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    Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
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    Farewell, Neuroinformatics!
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    Explorers of the cells: Toward cross-platform knowledge integration to evaluate neuronal function
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  150. Nov 2021
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    How many markers are needed to robustly determine a cell's type?
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  152. Oct 2021
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    A multimodal cell census and atlas of the mammalian primary motor cortex
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    An atlas of gene regulatory elements in adult mouse cerebrum
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    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
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  157. Jul 2021
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    Conserved cell types with divergent features in human versus mouse cortex
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  159. Jun 2021
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    Phenotypic variation of transcriptomic cell types in mouse motor cortex
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  161. Mar 2021
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    Joint profiling of histone modifications and transcriptome in single cells from mouse brain
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  163. Feb 2021
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    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
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  165. Sep 2020
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    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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