114 Matching Annotations
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    Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
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    biorxiv.org/content/10.64898/2025.12.02.691876v1
  3. Nov 2025
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    Continuous cell-type diversification in mouse visual cortex development
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    Transcriptomic and spatial organization of telencephalic GABAergic neurons
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  6. Sep 2025
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    Cell-type-specific enrichment of somatic aneuploidy in the mammalian brain
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    sciencedirect.com/science/article/pii/S0896627325005902
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    A consensus definition for deep layer 6 excitatory neurons in mouse somatosensory, visual, and motor cortex
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    sciencedirect.com/science/article/pii/S2211124725009386
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    Spatial dissimilarity analysis in single-cell transcriptomics
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    sciencedirect.com/science/article/pii/S2667237525001778
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    scDCT: a conditional diffusion-based deep learning model for high-fidelity single-cell cross-modality translation
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    dx.doi.org/10.1093/bib/bbaf400
  12. Jul 2025
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    Quantification of transcript isoforms at the single-cell level using SCALPEL
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    Human CLOCK enhances neocortical function
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    CellScope: High-Performance Cell Atlas Workflow with Tree-Structured Representation
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    biorxiv.org/content/10.1101/2025.02.15.638400v1
  16. Jun 2025
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    Exploring brain circuits, one cell type—or more— at a time
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  20. Dec 2024
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    A consensus definition for deep layer 6 excitatory neurons in mouse neocortex
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  22. Sep 2024
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    Areal specializations in the morpho-electric and transcriptomic properties of primate layer 5 extratelencephalic projection neurons
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    sciencedirect.com/science/article/pii/S2211124724010696
  24. Aug 2024
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    Isoform cell-type specificity in the mouse primary motor cortex
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    nature.com/articles/s41586-021-03969-3
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    Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
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    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    Genetic Insights of Schizophrenia via Single Cell RNA-Sequencing Analyses
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    Transcriptional networks of transient cell states during human prefrontal cortex development
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  31. May 2024
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    Concerted neuron-astrocyte gene expression declines in aging and schizophrenia
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  33. Apr 2024
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    scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
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  35. Mar 2024
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    Single-cell epigenomics reveals mechanisms of human cortical development
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  37. Feb 2024
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    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
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  39. Jan 2024
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    Cell type-specific enrichment of somatic aneuploidy in the mammalian brain
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    Transcriptomic cytoarchitecture reveals principles of human neocortex organization
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    Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
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    Transcriptomic diversity of cell types across the adult human brain
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  44. Dec 2023
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    Single-cell analysis of chromatin accessibility in the adult mouse brain
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    The molecular cytoarchitecture of the adult mouse brain
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    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
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    Molecular features driving cellular complexity of human brain evolution
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    Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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    A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
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    Identification of brain cell types underlying genetic association with word reading and correlated traits
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    A molecularly defined and spatially resolved cell atlas of the whole mouse brain
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    The cell type composition of the adult mouse brain revealed by single cell and spatial genomics
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    Generation of ventralized human thalamic organoids with thalamic reticular nucleus
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    MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and Morphology
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    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
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    Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
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    Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas
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    On Complexity and Emergence: Linking the Hypotheses of Pharmacoresistance in Epilepsy
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    Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS
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    Selective plasticity of fast and slow excitatory synapses on somatostatin interneurons in adult visual cortex
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    A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex
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    AKT Signaling Modulates Latent Viral Reservoir Viability in HIV-1-Infected Blood-Brain Barrier Pericytes
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    Early Alzheimer’s disease pathology in human cortex involves transient cell states
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    Uniform quantification of single-nucleus ATAC-seq data with Paired-Insertion Counting (PIC) and a model-based insertion rate estimator
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    Comparative transcriptomics reveals human-specific cortical features
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  78. Nov 2023
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    Interindividual variation in human cortical cell type abundance and expression
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    Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus
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  81. Oct 2023
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    A marmoset brain cell census reveals regional specialization of cellular identities
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    Comparative transcriptomics reveals human-specific cortical features
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    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    A marmoset brain cell census reveals regional specialization of cellular identities
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  86. Sep 2023
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    Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
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    Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections
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  89. Aug 2023
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    Droplet-based single-cell joint profiling of histone modifications and transcriptomes
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  91. Jul 2023
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    Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
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    A guide to the BRAIN Initiative Cell Census Network data ecosystem
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  94. May 2023
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    Dense functional and molecular readout of a circuit hub in sensory cortex
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  96. Feb 2023
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    The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
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  98. Jul 2022
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    Evolutionary innovations of human cerebral cortex viewed through the lens of high-throughput sequencing
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    onlinelibrary.wiley.com/doi/10.1002/dneu.22893
  100. Jun 2022
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    Cortical VIP+ Interneurons in the Upper and Deeper Layers Are Transcriptionally Distinct
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    link.springer.com/article/10.1007/s12031-022-02040-8
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    Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology
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  103. May 2022
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    Machine learning sequence prioritization for cell type-specific enhancer design
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    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
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  106. Apr 2022
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    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
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    Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex
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    DNA methylation atlas of the mouse brain at single-cell resolution
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    Epigenomic diversity of cortical projection neurons in the mouse brain
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    Purkinje cell outputs selectively inhibit a subset of unipolar brush cells in the input layer of the cerebellar cortex
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    elifesciences.org/articles/68802
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    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
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    Benchmarking atlas-level data integration in single-cell genomics
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    A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq
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    Cell-type-specific 3D epigenomes in the developing human cortex
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    Consistent cross-modal identification of cortical neurons with coupled autoencoders
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    Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor
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    UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
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  119. academic.oup.com academic.oup.com
    PsiNorm: a scalable normalization for single-cell RNA-seq data
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    Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
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    A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
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    A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types
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    Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice
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    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
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    Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
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    Explorers of the cells: Toward cross-platform knowledge integration to evaluate neuronal function
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  131. Nov 2021
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    How many markers are needed to robustly determine a cell's type?
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  133. Oct 2021
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    A multimodal cell census and atlas of the mammalian primary motor cortex
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    An atlas of gene regulatory elements in adult mouse cerebrum
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    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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  138. Jul 2021
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    Conserved cell types with divergent features in human versus mouse cortex
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  140. Jun 2021
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    Phenotypic variation of transcriptomic cell types in mouse motor cortex
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  142. Mar 2021
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    Joint profiling of histone modifications and transcriptome in single cells from mouse brain
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  144. Feb 2021
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    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
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  146. Sep 2020
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    Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
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