20 years Age of onset 3 years 9 years
9 Matching Annotations
- Jul 2026
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pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
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20 years Age of onset 3 years 9 years
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pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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38/20 20 0.225 95 16 2 1 1 3 4 L541P G1961E
another patient with the 541 variant potentially not in cis with ala1038val. G1961E has been classified as pathogenic by the ABCA4 VCEP
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31/19 17 0.1 102 9 3 2 2 3 4 L541P F655C
another patient with the 541 variant potentially not in cis with ala1038val. F655C is path/LP in clinvar
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pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
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Cases 4–7
Case#: 4, 34 year old male
DiseaseAssertion: Stargardt Disease
FamilyInfo: NR
CasePresentingHPOs: NR
CaseHPOFreeText: NR
CaseNotHPOs:
CaseNotHPOFreeText: NR
Genotyping Method: Analyzing the ABCA4 gene
PreviouslyPublished: NR
Variant: 4469G>A
ClinVar: NR
CAID: NR
SupplementalData: NR
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pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
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STGD1 represents the most prevalent inherited macul-opathy, estimated to occur in 1 in 10,000 individuals.
gnomad 0.0001 frequency
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Therefore,a lower homozygous frequency in the BAP dataset than expectedbased on the AF in the general population indicates that a variantis mild
I don't understand what this means, but how I interepret it is if an homozygous STGD1 variant appears at a lower frequency that it is less severe.
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Therefore,a lower homozygous frequency in the BAP dataset than expectedbased on the AF in the general population indicates that a variantis mild
I don't understand what this means, but how I interepret it is if an homozygous STGD1 variant appears at a lower frequency that it is less severe.
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pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
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(http://genetics.bwh.harvard.edu/pph2/). In addition, mutation taster predicted both L168F and L168S variant as disease-causing with PROVEAN predictions of L168F (-2.767) and L168S (-4.083) as deleterious (https://www.mutationtaster.org/). As such, it was not surprising that the L168S variant patient had much more severe disease onset and rapid progression compared to other SCA34-causing ELOVL4 variants. For example, a patient carrying the T233M ELOVL4 variant was reported to develop ataxia starting at 15 years of age [10]. However, at the time of examination of this patient at 60 years of age, an MRI of the brain showed only subtle flattening of the ventral pons and mild cerebellar atrophy [10]. Another patient carrying the Q180P ELOVL4 variant developed ataxia in his mid-20 s and showed cerebellar and pontine atrophy [11]. Japanese patients also carrying the W256G variant developed gait ataxia between 13–56 years of age [12]. However, disease progression was reported to be very slow, and patients did not require assistance with walking with a walker or cane until the age of 60 years or older [12]. Taken together, it looks like the nature of the mutation and its effect on normal ELOVL4 function most likely through defects in VLC-FA biosynthesis or conformational changes in protein structure are critical to disease onset and severity of the pathologies.
SupplementalData:
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(http://genetics.bwh.harvard.edu/pph2/). In addition, mutation taster predicted both L168F and L168S variant as disease-causing with PROVEAN predictions of L168F (-2.767) and L168S (-4.083) as deleterious (https://www.mutationtaster.org/). As such, it was not surprising that the L168S variant patient had much more severe disease onset and rapid progression compared to other SCA34-causing ELOVL4 variants. For example, a patient carrying the T233M ELOVL4 variant was reported to develop ataxia starting at 15 years of age [10]. However, at the time of examination of this patient at 60 years of age, an MRI of the brain showed only subtle flattening of the ventral pons and mild cerebellar atrophy [10]. Another patient carrying the Q180P ELOVL4 variant developed ataxia in his mid-20 s and showed cerebellar and pontine atrophy [11]. Japanese patients also carrying the W256G variant developed gait ataxia between 13–56 years of age [12]. However, disease progression was reported to be very slow, and patients did not require assistance with walking with a walker or cane until the age of 60 years or older [12]. Taken together, it looks like the nature of the mutation and its effect on normal ELOVL4 function most likely through defects in VLC-FA biosynthesis or conformational changes in protein structure are critical to disease onset and severity of the pathologies.
SupplementalData:
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