And justifie the wayes of God to men.
Maybe another classical epic reference. Aristotle was talking about the august, heroic and godlike properties of the epic. Milton here wishes to "justify the ways of God to men", not just to make men in awe, but to make men understand what is heroic. By doing this, he deviates from the epic norm, and rebels (being the key word of the poem perhaps). "What in me is dark illumin" could be interpreted as a quest for knowledge, which led to the original sin. Do desire for knowledge and disobedience go hand in hand? And is disobedience so bad?