261 Matching Annotations
  1. Nov 2022
  2. dbtgr.hgc.jp dbtgr.hgc.jp
    DBTGR - DataBase of Tunicate Gene Regulation
    1
    1. Nubia_Casillas 10 Nov 2022
      DataBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/808

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115148639

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    dbtgr.hgc.jp/
  3. manteia.igbmc.fr manteia.igbmc.fr
    Manteia
    1
    1. Nubia_Casillas 10 Nov 2022
      Manteia

      NARid: https://www.oxfordjournals.org/nar/database/summary/1712

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115148638

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    manteia.igbmc.fr/
  4. microsporidiadb.org microsporidiadb.org
    MicrosporidiaDB
    1
    1. Nubia_Casillas 10 Nov 2022
      Search for

      NARid: https://www.oxfordjournals.org/nar/database/summary/1422

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

      wd: https://www.wikidata.org/wiki/Q115148637

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    microsporidiadb.org/micro/app
  5. www.wormqtl-hd.org www.wormqtl-hd.org
    WormQTL-HD
    1
    1. Nubia_Casillas 10 Nov 2022
      WormQTL

      NARid: https://www.oxfordjournals.org/nar/database/summary/1714

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115148636

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    wormqtl-hd.org/xqtl_panacea/molgenis.do
  6. genomecrispr.dkfz.de genomecrispr.dkfz.de
    GenomeCRISPR
    1
    1. Nubia_Casillas 10 Nov 2022
      GenomeCRISPR

      NARid: https://www.oxfordjournals.org/nar/database/summary/1958

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115148635

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    genomecrispr.dkfz.de/
  7. bioinformatics.psb.ugent.be bioinformatics.psb.ugent.be
    Pico-Plaza : comparative genomics in plants
    1
    1. Nubia_Casillas 10 Nov 2022
      access point

      NARid: https://www.oxfordjournals.org/nar/database/summary/1752

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

      wd: https://www.wikidata.org/wiki/Q115148634

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    bioinformatics.psb.ugent.be/plaza/versions/pico-plaza/
  8. antismash-db.secondarymetabolites.org antismash-db.secondarymetabolites.org
    base de datos antiSMASH
    1
    1. Nubia_Casillas 10 Nov 2022
      antiSMASH

      NARid: https://www.oxfordjournals.org/nar/database/summary/1949

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q115148633

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    antismash-db.secondarymetabolites.org/
  9. archive.har.mrc.ac.uk archive.har.mrc.ac.uk
    The National Mouse Archive
    1
    1. Nubia_Casillas 10 Nov 2022
      National Mouse Archive

      NARid: https://www.oxfordjournals.org/nar/database/summary/1369

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115148632

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    archive.har.mrc.ac.uk/index
  10. proteininformationresource.org proteininformationresource.org
    BioThesaurus [PIR - Protein Information Resource]
    1
    1. Nubia_Casillas 10 Nov 2022
      BioThesaurus

      NARid: https://www.oxfordjournals.org/nar/database/summary/915

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q115148631

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    proteininformationresource.org/iprolink/biothesaurus/
  11. www.diark.org www.diark.org
    diArk | index
    1
    1. Nubia_Casillas 10 Nov 2022
      diArk

      NARid: https://www.oxfordjournals.org/nar/database/summary/1172

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

      wd: https://www.wikidata.org/wiki/Q115148630

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    diark.org/diark/
  12. www.pseudomonas.com www.pseudomonas.com
    The Pseudomonas Genome Database - Genome annotation and comparative genome analysis
    1
    1. Nubia_Casillas 08 Nov 2022
      Pseudomonas Genome Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/733

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q7255045

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    pseudomonas.com/
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Home - HomoloGene - NCBI
    1
    1. Nubia_Casillas 08 Nov 2022
      HomoloGene

      NARid: https://www.oxfordjournals.org/nar/database/summary/605

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q468215

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    ncbi.nlm.nih.gov/homologene
  14. bacdive.dsmz.de bacdive.dsmz.de
    BacDive - The Bacterial Diversity Metadatabase
    1
    1. Nubia_Casillas 08 Nov 2022
      BacDive

      NARid: https://www.oxfordjournals.org/nar/database/summary/1694

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

      wd: https://www.wikidata.org/wiki/Q25349390

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    bacdive.dsmz.de/
  15. proconsortium.org proconsortium.org
    Protein Ontology
    1
    1. Nubia_Casillas 08 Nov 2022
      PRO

      NARid: https://www.oxfordjournals.org/nar/database/summary/1327

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q55118584

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    proconsortium.org/
  16. www.mousephenotype.org www.mousephenotype.org
    IMPC | International Mouse Phenotyping Consortium
    1
    1. Nubia_Casillas 08 Nov 2022
      IMPC data

      NARid: https://www.oxfordjournals.org/nar/database/summary/1071 https://www.oxfordjournals.org/nar/database/summary/1711

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q113986939

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    mousephenotype.org/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Viral Genomes
    1
    1. Nubia_Casillas 08 Nov 2022
      Viral Genome Sequences

      NARid: https://www.oxfordjournals.org/nar/database/summary/602 https://www.oxfordjournals.org/nar/database/summary/909

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

      wd: https://www.wikidata.org/wiki/Q114731517

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    ncbi.nlm.nih.gov/genome/viruses/
  18. bioinfo-mml.sjtu.edu.cn bioinfo-mml.sjtu.edu.cn
    ICEberg
    1
    1. Nubia_Casillas 08 Nov 2022
      ICEberg 2.0

      NARid: https://www.oxfordjournals.org/nar/database/summary/1506

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q85720008

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    bioinfo-mml.sjtu.edu.cn/ICEberg2/index.php
  19. fungidb.org fungidb.org
    FungiDB
    1
    1. Nubia_Casillas 07 Nov 2022
      Search for.

      NARid: https://www.oxfordjournals.org/nar/database/summary/1509

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

      wd: https://www.wikidata.org/wiki/Q115066900

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    fungidb.org/fungidb/app
  20. gowiki.tamu.edu gowiki.tamu.edu
    GONUTS
    1
    1. Nubia_Casillas 07 Nov 2022
      GONUTS

      NARid: https://www.oxfordjournals.org/nar/database/summary/1561

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q115066896

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    gowiki.tamu.edu/wiki/index.php/Main_Page
  21. prophecy.lundberg.gu.se prophecy.lundberg.gu.se
    PROPHECY DATABASE
    1
    1. Nubia_Casillas 07 Nov 2022
      PROPHECY Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/730

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

      wd: https://www.wikidata.org/wiki/Q115066894

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    prophecy.lundberg.gu.se/
  22. tga.nig.ac.jp tga.nig.ac.jp
    Genetic Heritability Database < NIG Genome Informatics Laboratory >
    1
    1. Nubia_Casillas 07 Nov 2022
      H²DB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1637

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115066892

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    tga.nig.ac.jp/h2db/
  23. hbvdb.lyon.inserm.fr hbvdb.lyon.inserm.fr
    HBVdb::Home - Hepatitis B Virus Database
    1
    1. Nubia_Casillas 07 Nov 2022
      The specialized Hepatitis B Virus

      NARid: https://www.oxfordjournals.org/nar/database/summary/1618

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

      wd: https://www.wikidata.org/wiki/Q115066889

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    hbvdb.lyon.inserm.fr/HBVdb/
  24. bacdb.cn bacdb.cn
    BacWGSTdb
    1
    1. Nubia_Casillas 07 Nov 2022
      BacWGSTdb

      NARid: https://www.oxfordjournals.org/nar/database/summary/1867

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

      wd: https://www.wikidata.org/wiki/Q115066887

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    bacdb.cn/BacWGSTdb/
  25. eugenes.org eugenes.org
    euGenes: Eukaryote Genes
    1
    1. Nubia_Casillas 07 Nov 2022
      euGenes

      NARid: https://www.oxfordjournals.org/nar/database/summary/396

      NARCategory: Human and other Vertebrate Genomes

      Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q115066885

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    eugenes.org/
  26. chlamdb.ch chlamdb.ch
    Untitled document
    1
    1. Nubia_Casillas 07 Nov 2022
      Chlamydiae Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/2005

      Category: Genomics Databases (non-vertebrate)

      Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q115066883

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    chlamdb.ch/
  27. www.effectors.org www.effectors.org
    EffectiveDB | Prediction of bacterial protein secretion
    1
    1. Nubia_Casillas 07 Nov 2022
      EffectiveDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1409

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q115066880

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    effectors.org/
  28. ontobee.org ontobee.org
    Ontobee
    1
    1. Nubia_Casillas 05 Nov 2022
      Ontobee

      NARid: https://www.oxfordjournals.org/nar/database/summary/1938

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q47069651

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    ontobee.org/
  29. dictybase.org dictybase.org
    dictyBase Home
    1
    1. Nubia_Casillas 05 Nov 2022
      dictyBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/446

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

      wd: https://www.wikidata.org/wiki/Q5273990

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    dictybase.org/
  30. lpsn.dsmz.de lpsn.dsmz.de
    LPSN - List of Prokaryotic names with Standing in Nomenclature
    1
    1. Nubia_Casillas 05 Nov 2022
      LPSN

      NARid: https://www.oxfordjournals.org/nar/database/summary/1697

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

      wd: https://www.wikidata.org/wiki/Q6595107

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    lpsn.dsmz.de/
  31. www.bacterio.net www.bacterio.net
    LPSN - List of Prokaryotic names with Standing in Nomenclature
    1
    1. Nubia_Casillas 05 Nov 2022
      LPSN

      NARid: https://www.oxfordjournals.org/nar/database/summary/1697

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

      wd: https://www.wikidata.org/wiki/Q6595107

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    bacterio.net/
  32. hamap.expasy.org hamap.expasy.org
    HAMAP home
    1
    1. Nubia_Casillas 04 Nov 2022
      HAMAP

      NARid: https://www.oxfordjournals.org/nar/database/summary/1210

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q109491986

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    hamap.expasy.org/
  33. Oct 2022
  34. subtiwiki.uni-goettingen.de subtiwiki.uni-goettingen.de
    SubtiWiki
    1
    1. Nubia_Casillas 18 Oct 2022
      Subti-Apps

      NARid: https://www.oxfordjournals.org/nar/database/summary/110 https://www.oxfordjournals.org/nar/database/summary/1563

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q114731567

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    subtiwiki.uni-goettingen.de/
  35. web.stanford.edu web.stanford.edu
    Stanford Golden Gate Cloning Project
    1
    1. Nubia_Casillas 18 Oct 2022
      CauloBrowser

      NARid: https://www.oxfordjournals.org/nar/database/summary/1865

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q114731566

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    web.stanford.edu/group/golden_gate_clon/cgi-bin/index/index.py
  36. www.inetbio.org www.inetbio.org
    MouseNetV2 - Probabilistic Functional Gene Network of Mus musculus
    1
    1. Nubia_Casillas 18 Oct 2022
      MouseNetV2

      NARid: https://www.oxfordjournals.org/nar/database/summary/1877

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q114731526

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    inetbio.org/mousenet/
  37. superfly.crg.eu superfly.crg.eu
    SuperFly - Comparative Gene Expression Database of Dipteran Development
    1
    1. Nubia_Casillas 18 Oct 2022
      SuperFly

      NARid: https://www.oxfordjournals.org/nar/database/summary/1796

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q114731565

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    superfly.crg.eu/
  38. pave.niaid.nih.gov pave.niaid.nih.gov
    PaVE
    1
    1. Nubia_Casillas 18 Oct 2022
      the papillomavirus episteme

      NARid: https://www.oxfordjournals.org/nar/database/summary/1619

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

      wd: https://www.wikidata.org/wiki/Q114731524

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    pave.niaid.nih.gov/
  39. mage.genoscope.cns.fr mage.genoscope.cns.fr
    MicroScope Home - MaGe: Microbial Genome Annotation & Analysis Platform - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes
    1
    1. Nubia_Casillas 18 Oct 2022
      MicroScope

      NARid: https://www.oxfordjournals.org/nar/database/summary/1666

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q114731523

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    mage.genoscope.cns.fr/agc/prod/microscope/home/index.php
  40. www.wdcm.org www.wdcm.org
    World Data Centre for Microorgannisms
    1
    1. Nubia_Casillas 18 Oct 2022
      WFCC

      NARid: https://www.oxfordjournals.org/nar/database/summary/1954

      NAR Category: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q114731522

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    wdcm.org/
  41. oikoarrays.biology.uiowa.edu oikoarrays.biology.uiowa.edu
    Untitled document
    1
    1. Nubia_Casillas 18 Oct 2022
      database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1639

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q114731521

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    oikoarrays.biology.uiowa.edu/Oiko/
  42. pede.dna.affrc.go.jp pede.dna.affrc.go.jp
    Pig Expression Data Explorer
    1
    1. Nubia_Casillas 18 Oct 2022
      database site

      NARid: https://www.oxfordjournals.org/nar/database/summary/556

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q114731520

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    pede.dna.affrc.go.jp/
  43. www.ridom.de www.ridom.de
    Ridom Home
    1
    1. Nubia_Casillas 18 Oct 2022
      Ridom

      NARid: https://www.oxfordjournals.org/nar/database/summary/299

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

      wd: https://www.wikidata.org/wiki/Q114731519

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    ridom.de/
  44. hieranoidb.sbc.su.se hieranoidb.sbc.su.se
    HieranoiDB
    1
    1. Nubia_Casillas 18 Oct 2022
      HieranoiDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1959

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q114731518

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    hieranoidb.sbc.su.se/
  45. gold.jgi.doe.gov gold.jgi.doe.gov
    JGI GOLD | Home
    1
    1. Nubia_Casillas 15 Oct 2022
      Genomes Online Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/2110

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

      wd: https://www.wikidata.org/wiki/Q5533492

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    gold.jgi.doe.gov/
  46. www.mg-rast.org www.mg-rast.org
    MG-RAST
    1
    1. Nubia_Casillas 15 Oct 2022
      for programmatic access visit our API site

      NARid: https://www.oxfordjournals.org/nar/database/summary/1860

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q17120727

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    mg-rast.org/
  47. www.ebi.ac.uk www.ebi.ac.uk
    European Bioinformatics Institute
    1
    1. Nubia_Casillas 14 Oct 2022
      Gene Ontology Annotation

      NARid: https://www.oxfordjournals.org/nar/database/summary/389

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q28018111

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    ebi.ac.uk/GOA/index
  48. viralzone.expasy.org viralzone.expasy.org
    ViralZone
    1
    1. Nubia_Casillas 14 Oct 2022
      VIRALZONE

      NARid: https://www.oxfordjournals.org/nar/database/summary/1337

      NAR Category: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

      wd: https://www.wikidata.org/wiki/Q15674507

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    viralzone.expasy.org/
  49. www.microbesonline.org www.microbesonline.org
    MicrobesOnline - A website for browsing and comparing microbial genomes
    1
    1. Nubia_Casillas 14 Oct 2022
      Add genomes

      NARid: https://www.oxfordjournals.org/nar/database/summary/1358

      NAR Category: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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  50. www.phytopathdb.org www.phytopathdb.org
    PhytoPath
    1
    1. Nubia_Casillas 14 Oct 2022
      PhytoPath

      NARid: https://www.oxfordjournals.org/nar/database/summary/1868

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

      wd: https://www.wikidata.org/wiki/Q7189785

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    phytopathdb.org/
  51. tolweb.org tolweb.org
    Tree of Life Web Project
    1
    1. Nubia_Casillas 14 Oct 2022
      Tree of Life

      NARid: https://www.oxfordjournals.org/nar/database/summary/301

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Taxonomy and identification

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    tolweb.org/tree/phylogeny.html
  52. www.mgc.ac.cn www.mgc.ac.cn
    VFDB: Virulence Factors of Bacterial Pathogens
    1
    1. Nubia_Casillas 14 Oct 2022
      virulence factor database

      NARid: https://www.oxfordjournals.org/nar/database/summary/760

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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    mgc.ac.cn/VFs/main.htm
  53. www.informatics.jax.org www.informatics.jax.org
    MGI-Mouse Genome Informatics-The international database resource for the laboratory mouse
    1
    1. Nubia_Casillas 14 Oct 2022
      MGI

      NARid: https://www.oxfordjournals.org/nar/database/summary/124

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Model organisms, comparative genomics

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    informatics.jax.org/
  54. identifiers.org identifiers.org
    Identifiers.org < EMBL-EBI
    1
    1. Nubia_Casillas 14 Oct 2022
      Identifiers.org

      NARid: https://www.oxfordjournals.org/nar/database/summary/1502

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Home - BioProject - NCBI
    1
    1. Nubia_Casillas 14 Oct 2022
      Using BioProject

      NARid: https://www.oxfordjournals.org/nar/database/summary/916

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

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    ncbi.nlm.nih.gov/bioproject
  56. origin.tubic.org origin.tubic.org
    DEG
    1
    1. Nubia_Casillas 14 Oct 2022
      Essential genes

      NARid: https://www.oxfordjournals.org/nar/database/summary/445

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  57. bioinfo-mml.sjtu.edu.cn bioinfo-mml.sjtu.edu.cn
    SecReT4
    1
    1. Nubia_Casillas 14 Oct 2022
      SecReT4

      NARid: https://www.oxfordjournals.org/nar/database/summary/1576

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  58. www.iith.ac.in www.iith.ac.in
    EK3D
    1
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      EK3D

      NARid: https://www.oxfordjournals.org/nar/database/summary/1866

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  59. mycocosm.jgi.doe.gov mycocosm.jgi.doe.gov
    Mycocosm
    1
    1. Nubia_Casillas 14 Oct 2022
      Search for JGI Data

      NARid: https://www.oxfordjournals.org/nar/database/summary/1704

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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  60. hgtree.snu.ac.kr hgtree.snu.ac.kr
    HGTree
    1
    1. Nubia_Casillas 14 Oct 2022
      HGTree database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1862

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    hgtree.snu.ac.kr/
  61. geneontology.org geneontology.org
    Gene Ontology Consortium | Gene Ontology Consortium
    1
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      GO Consortium

      NARid: https://www.oxfordjournals.org/nar/database/summary/487

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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    geneontology.org/
  62. funsimmat.bioinf.mpi-inf.mpg.de funsimmat.bioinf.mpi-inf.mpg.de
    D3: Computational Biology & Applied Algorithmics: Software: FunSimMat
    1
    1. Nubia_Casillas 12 Oct 2022
      FunSimMat

      NARid: https://www.oxfordjournals.org/nar/database/summary/1075

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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    funsimmat.bioinf.mpi-inf.mpg.de/
  63. www.infrafrontier.eu www.infrafrontier.eu
    INFRAFRONTIER - The European infrastructure for phenotyping and archiving of model mammalian genomes
    1
    1. Nubia_Casillas 11 Oct 2022
      INFRAFRONTIER

      NARid: https://www.oxfordjournals.org/nar/database/summary/1370

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    infrafrontier.eu/node/2
  64. Sep 2022
  65. github.com github.com
    Home · lmichan/BioDBS Wiki
    1
    1. Nubia_Casillas 30 Sep 2022
      http://www.mir2disease.org

      NARid: https://www.oxfordjournals.org/nar/database/summary/1234

      NARCategory: RNA sequence databases

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  66. www.pathbase.net www.pathbase.net
    Pathbase
    1
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      Pathbase

      NARid: https://www.oxfordjournals.org/nar/database/summary/554

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  67. cistrome.org cistrome.org
    Cistrome DB
    2
    1. Nubia_Casillas 16 Sep 2022
      Home

      NARid: https://www.oxfordjournals.org/nar/database/summary/1957

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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      statistics

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      BioDBS
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    cistrome.org/db/
  68. veupathdb.org veupathdb.org
    VeuPathDB
    1
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      VEuPathDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/969

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

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  69. ophid.utoronto.ca ophid.utoronto.ca
    NetwoRx : Connecting Drugs to Networks and Phenotypes
    1
    1. Nubia_Casillas 15 Sep 2022
      Search Drug-Gene Interactions

      NARid: https://www.oxfordjournals.org/nar/database/summary/1623

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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    ophid.utoronto.ca/networx/
  70. tisdb.human.cornell.edu tisdb.human.cornell.edu
    TIS_base
    1
    1. Nubia_Casillas 15 Sep 2022
      translation initiation sites

      NARid: https://www.oxfordjournals.org/nar/database/summary/1713

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    tisdb.human.cornell.edu/
  71. v3.ogee.info v3.ogee.info
    OGEE
    1
    1. Nubia_Casillas 15 Sep 2022
      OGEE

      NARid: https://www.oxfordjournals.org/nar/database/summary/1527

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    v3.ogee.info/
  72. img.jgi.doe.gov img.jgi.doe.gov
    JGI IMG Integrated Microbial Genomes & Microbiomes
    1
    1. Nubia_Casillas 15 Sep 2022
      IMG/M

      NARid: https://www.wikidata.org/wiki/Q113986847

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    img.jgi.doe.gov/
  73. img.jgi.doe.gov img.jgi.doe.gov
    JGI IMG Home
    1
    1. Nubia_Casillas 15 Sep 2022
      Integrated Microbial Genomes

      NARid: https://www.oxfordjournals.org/nar/database/summary/828

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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    img.jgi.doe.gov/cgi-bin/m/main.cgi
  74. genolist.pasteur.fr genolist.pasteur.fr
    GenoList genome browser
    1
    1. Nubia_Casillas 13 Sep 2022
      GenoList

      NARid: https://www.oxfordjournals.org/nar/database/summary/1077

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

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    genolist.pasteur.fr/
  75. nhprtr.org nhprtr.org
    NHPRTR.org
    1
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      NHPRTR

      NARid: https://www.oxfordjournals.org/nar/database/summary/1638

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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  76. services.cbib.u-bordeaux.fr services.cbib.u-bordeaux.fr
    MG 3.0
    1
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      MolliGen

      NARid: https://www.oxfordjournals.org/nar/database/summary/534

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    services.cbib.u-bordeaux.fr/molligen/
  77. www.treefam.org www.treefam.org
    TreeFam: Home page
    1
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      TreeFam

      NARid: https://www.oxfordjournals.org/nar/database/summary/875

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q16335173

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    treefam.org/
  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RefSeq: NCBI Reference Sequence Database
    1
    1. Nubia_Casillas 12 Sep 2022
      RefSeq

      NARid: https://www.oxfordjournals.org/nar/database/summary/126

      NARCategory: Genomics Databases (non-vertebrate)

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    ncbi.nlm.nih.gov/refseq/
  79. supfam.org supfam.org
    dcGO - A comprehensive domain-centric ontology resource for post-genomic research on functions, phenotypes, diseases and more
    1
    1. Nubia_Casillas 12 Sep 2022
      dcGO

      NARid: https://www.oxfordjournals.org/nar/database/summary/1616

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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    supfam.org/SUPERFAMILY/dcGO/
  80. www.yeastrc.org www.yeastrc.org
    YRC Public Data Repository - Welcome!
    1
    1. Nubia_Casillas 12 Sep 2022
      Yeast Resource Center

      NARid: https://www.oxfordjournals.org/nar/database/summary/763

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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    yeastrc.org/pdr/pages/front.jsp
  81. www.inetbio.org www.inetbio.org
    YeastNet - Probabilistic Functional Gene Network of Saccharomyces cerevisiae
    1
    1. Nubia_Casillas 12 Sep 2022
      YeastNet

      NARid: https://www.oxfordjournals.org/nar/database/summary/1705

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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    inetbio.org/yeastnet/
  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Home - Genome - NCBI
    1
    1. Nubia_Casillas 12 Sep 2022
      Genome

      NARid: https://www.oxfordjournals.org/nar/database/summary/458

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

      wd: https://www.wikidata.org/wiki/Q87630124

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    ncbi.nlm.nih.gov/genome
  83. iubmb.qmul.ac.uk iubmb.qmul.ac.uk
    IUBMB Nomenclature Home Page
    1
    1. Nubia_Casillas 10 Sep 2022
      Recommendations

      NARid: https://www.oxfordjournals.org/nar/database/summary/513

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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  84. igrcid.ibms.sinica.edu.tw igrcid.ibms.sinica.edu.tw
    Untitled document
    1
    1. Nubia_Casillas 10 Sep 2022
      IGRhCellID

      NARid: https://www.oxfordjournals.org/nar/database/summary/1416

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q5971041

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    igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi
  85. gencolors.leibniz-fli.de gencolors.leibniz-fli.de
    GenColors
    1
    1. Nubia_Casillas 09 Sep 2022
      GenColors

      NARid: https://www.oxfordjournals.org/nar/database/summary/1668

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    gencolors.leibniz-fli.de/
  86. research.nhgri.nih.gov research.nhgri.nih.gov
    Zebrafish Insertion Collection - Zebrafish Insertion Collection
    1
    1. Nubia_Casillas 09 Sep 2022
      Zebrafish Insertion Collection

      NARid: https://www.oxfordjournals.org/nar/database/summary/1640

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    research.nhgri.nih.gov/zinc/
  87. research.bioinformatics.udel.edu research.bioinformatics.udel.edu
    iSyTE - Inicio
    1
    1. Nubia_Casillas 08 Sep 2022
      free resource

      NARid: https://www.oxfordjournals.org/nar/database/summary/129

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    research.bioinformatics.udel.edu/iSyTE/ppi/
  88. meta.microbesonline.org meta.microbesonline.org
    metaMicrobesOnline - A website for browsing and comparing microbial metagenomes
    1
    1. Nubia_Casillas 08 Sep 2022
      metaMicrobesOnline

      NARid: https://www.oxfordjournals.org/nar/database/summary/1620

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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    meta.microbesonline.org/
  89. tdrtargets.org tdrtargets.org
    TDR Targets
    1
    1. Nubia_Casillas 08 Sep 2022
      TDR Targets

      NARid: https://www.oxfordjournals.org/nar/database/summary/1178

      NARategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

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    tdrtargets.org/
  90. pbil.univ-lyon1.fr pbil.univ-lyon1.fr
    PhEVER | Viruses
    1
    1. Nubia_Casillas 08 Sep 2022
      PhEVER

      NARid: https://www.oxfordjournals.org/nar/database/summary/1432

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

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    pbil.univ-lyon1.fr/databases/phever/
  91. www.genomicus.bio.ens.psl.eu www.genomicus.bio.ens.psl.eu
    Genomicus v107.01 - Gene Search
    1
    1. Nubia_Casillas 07 Sep 2022
      Genomicus

      NARid: https://www.oxfordjournals.org/nar/database/summary/121 https://www.oxfordjournals.org/nar/database/summary/1669

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Model organisms, comparative genomics

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    genomicus.bio.ens.psl.eu/genomicus-107.01/cgi-bin/search.pl
  92. www.genome.wisc.edu www.genome.wisc.edu
    Essential Genes in E. coli
    1
    1. Nubia_Casillas 07 Sep 2022
      essential genes in E. coli

      NARid: https://www.oxfordjournals.org/nar/database/summary/462

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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    genome.wisc.edu/resources/essential.htm
  93. hpo.jax.org hpo.jax.org
    Human Phenotype Ontology
    1
    1. Nubia_Casillas 06 Sep 2022
      The Human Phenotype Ontology

      NARid: https://www.oxfordjournals.org/nar/database/summary/1692

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q17027854

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  94. www.treebase.org www.treebase.org
    TreeBASE Web
    1
    1. Nubia_Casillas 03 Sep 2022
      TreeBASE

      NARid: https://www.oxfordjournals.org/nar/database/summary/906

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

      wd: https://www.wikidata.org/wiki/Q17103624

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    treebase.org/treebase-web/home.html
  95. mgan.geni-act.org mgan.geni-act.org
    MGAN
    1
    1. Nubia_Casillas 03 Sep 2022
      MGAN

      NARid: https://www.oxfordjournals.org/nar/database/summary/1017

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q113682338

      NARdb biodatabases wikidata
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    mgan.geni-act.org/
  96. omia.org omia.org
    OMIA - Online Mendelian Inheritance in Animals
    1
    1. Nubia_Casillas 03 Sep 2022
      Online Mendelian Inheritance in Animals

      NARid: https://www.oxfordjournals.org/nar/database/summary/548

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

      wd: https://www.wikidata.org/wiki/Q16335167

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    omia.org/home/
  97. 4virology.net 4virology.net
    Home - Viral Bioinformatics Research Centre
    1
    1. Nubia_Casillas 01 Sep 2022
      VBRC

      NARid: https://www.oxfordjournals.org/nar/database/summary/725

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

      wd: https://www.wikidata.org/wiki/Q113668559

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    4virology.net/
  98. gigadb.org gigadb.org
    GigaDB
    1
    1. Nubia_Casillas 01 Sep 2022
      Dataset types

      NARid: https://www.oxfordjournals.org/nar/database/summary/1992

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases

      wd: https://www.wikidata.org/wiki/Q65053064

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    gigadb.org/
  99. www.brenda-enzymes.org www.brenda-enzymes.org
    Enzyme Database - BRENDA
    1
    1. Nubia_Casillas 01 Sep 2022
      Text-based queries

      NARid: https://www.oxfordjournals.org/nar/database/summary/1301

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature

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    brenda-enzymes.org/
  100. ngdc.cncb.ac.cn ngdc.cncb.ac.cn
    iDog
    1
    1. Nubia_Casillas 01 Sep 2022
      iDog

      NARid: https://www.oxfordjournals.org/nar/database/summary/1798

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    ngdc.cncb.ac.cn/idog/
  101. Aug 2022
  102. www.tbdb.org www.tbdb.org
    TB database: an integrated platform for Tuberculosis research | Genome operob chasecm mycobacterium smegmatis Capilia Tauns
    1
    1. Nubia_Casillas 31 Aug 2022
      Gene ressources

      NARid: https://www.oxfordjournals.org/nar/database/summary/1203

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q113657600

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    tbdb.org/
  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CCDS Report for Consensus CDS
    1
    1. Nubia_Casillas 31 Aug 2022
      Consensus CDS

      NARid: https://www.oxfordjournals.org/nar/database/summary/35 https://www.oxfordjournals.org/nar/database/summary/911

      NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics

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    ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi
  104. ww25.ecoliwiki.net ww25.ecoliwiki.net
    Ecoliwiki.net
    1
    1. Nubia_Casillas 30 Aug 2022
      Ecoliwiki.net

      NARid: https://www.oxfordjournals.org/nar/database/summary/1562

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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  105. cryptodb.org cryptodb.org
    CryptoDB
    1
    1. Nubia_Casillas 30 Aug 2022
      Resources

      NARid: https://www.oxfordjournals.org/nar/database/summary/439

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

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    cryptodb.org/cryptodb/app
  106. www.mgc.ac.cn www.mgc.ac.cn
    ShiBASE - an integrated database for comparative genomics of Shigella
    1
    1. Nubia_Casillas 30 Aug 2022
      Shigella is a group of Gram-negative

      NARid: https://www.oxfordjournals.org/nar/database/summary/865

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

      wd: https://www.wikidata.org/wiki/Q113648297

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    mgc.ac.cn/ShiBASE/
  107. www.yeastgenome.org www.yeastgenome.org
    Saccharomyces Genome Database | SGD
    1
    1. Nubia_Casillas 30 Aug 2022
      Saccharomyces Genome Database (SGD)

      NARid: https://www.oxfordjournals.org/nar/database/summary/357

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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    yeastgenome.org/
  108. www.patricbrc.org www.patricbrc.org
    PATRIC
    1
    1. Nubia_Casillas 30 Aug 2022
      PATRIC

      NARid: https://www.oxfordjournals.org/nar/database/summary/1000

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases

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    patricbrc.org/
  109. compbio.soe.ucsc.edu compbio.soe.ucsc.edu
    Ares Lab Yeast Intron Database
    1
    1. Nubia_Casillas 30 Aug 2022
      This site contains

      NARid: https://www.oxfordjournals.org/nar/database/summary/342

      NARCategory: Nucleotide Sequence Databases Subcategory: Gene structure, introns and exons, splice sites

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases

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    compbio.soe.ucsc.edu/yeast_introns.html
  110. viperdb.scripps.edu viperdb.scripps.edu
    Untitled document
    1
    1. Nubia_Casillas 30 Aug 2022
      Highlights

      NARid: https://www.oxfordjournals.org/nar/database/summary/761

      NARCategory: Structure Databases Subcategory: Protein structure

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases

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    viperdb.scripps.edu/
  111. toxodb.org toxodb.org
    ToxoDB
    1
    1. Nubia_Casillas 30 Aug 2022
      VEuPathDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/359

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases

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    toxodb.org/toxo/app
  112. www.diatomics.biologie.ens.fr www.diatomics.biologie.ens.fr
    The Phaeodactylum tricornutum Digital GeneExpression Database
    1
    1. Nubia_Casillas 30 Aug 2022
      Diatoms are eukaryotic

      NARid: https://www.oxfordjournals.org/nar/database/summary/662

      NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases NARCategory: Plant databases Subcategory: Other plants

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    diatomics.biologie.ens.fr/EST/
  113. www.glycosciences.de www.glycosciences.de
    Glycosciences.de | Glycosciences.DB start page
    1
    1. Nubia_Casillas 26 Aug 2022
      Glycosciences.DB

      NARid: https://www.oxfordjournals.org/nar/database/summary/300

      NARCategory: Structure Databases

      Subcategory: Carbohydrates

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    glycosciences.de/database/
  114. www.glycosciences.de www.glycosciences.de
    Glycosciences.de GlycoMapsDB
    1
    1. Nubia_Casillas 26 Aug 2022
      database

      NARid: https://www.oxfordjournals.org/nar/database/summary/988

      NARCategory: Structure Databases

      Subcategory: Carbohydrates

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    glycosciences.de/modeling/glycomapsdb/
  115. www.glycosciences.de www.glycosciences.de
    Glycosciences.de | glycoinformatics databases and tools
    1
    1. Nubia_Casillas 26 Aug 2022
      Glycosciences.de

      NARId: https://www.oxfordjournals.org/nar/database/summary/652

      NARCategory: Structure Databases Subcategory: Carbohydrates

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    glycosciences.de/
  116. www.genome3d.eu www.genome3d.eu
    genome3d.eu
    1
    1. Nubia_Casillas 25 Aug 2022
      genome3d

      NARid: https://www.oxfordjournals.org/nar/database/summary/1614

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q113613416

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    genome3d.eu/
  117. bioinformatics.ramapo.edu bioinformatics.ramapo.edu
    GRS Database | About
    1
    1. Nubia_Casillas 25 Aug 2022
      GRSDB2

      NARid: https://www.oxfordjournals.org/nar/database/summary/820

      NARCategory: RNA sequence databases

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      wd: https://www.wikidata.org/wiki/Q113613411

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    bioinformatics.ramapo.edu/GRSDB2/
  118. caps.ncbs.res.in caps.ncbs.res.in
    IMOTdb
    1
    1. Nubia_Casillas 25 Aug 2022
      iMOTdb

      NARid: https://www.oxfordjournals.org/nar/database/summary/829

      NARCategory: Structure Databases Subcategory: Protein structure NARCategory: Metabolic and Signaling Pathways Subcategory: Protein-protein interactions

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    caps.ncbs.res.in/imotdb/
  119. dorina.mdc-berlin.de dorina.mdc-berlin.de
    doRiNA
    1
    1. Nubia_Casillas 24 Aug 2022
      doRiNA

      NARid: https://www.oxfordjournals.org/nar/database/summary/1463

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113587753

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    dorina.mdc-berlin.de/
  120. polyasite.unibas.ch polyasite.unibas.ch
    PolyASite - Exploring 3' end processing
    1
    1. Nubia_Casillas 24 Aug 2022
      portal to the curated

      NARid: https://www.oxfordjournals.org/nar/database/summary/2004

      NARCategory: RNA sequence databases

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    polyasite.unibas.ch/
  121. mirdb.org mirdb.org
    miRDB - MicroRNA Target Prediction Database
    1
    1. Nubia_Casillas 24 Aug 2022
      miRDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1760 https://www.oxfordjournals.org/nar/database/summary/2070

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113587507

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    mirdb.org/
  122. brp.kfshrc.edu.sa brp.kfshrc.edu.sa
    Home Page
    1
    1. Nubia_Casillas 24 Aug 2022
      AU-Rich

      NARid: https://www.oxfordjournals.org/nar/database/summary/34 NARCategory: Nucleotide Sequence Databases

      https://www.oxfordjournals.org/nar/database/summary/232 NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113587472

      NAR

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    brp.kfshrc.edu.sa/ARED/
  123. mpd.bioinf.uni-sb.de mpd.bioinf.uni-sb.de
    miRPathDB
    1
    1. Nubia_Casillas 23 Aug 2022
      Enter

      NARid: https://www.oxfordjournals.org/nar/database/summary/1921 https://www.oxfordjournals.org/nar/database/summary/2071

      NARCategory: RNA sequence databases

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    mpd.bioinf.uni-sb.de/
  124. dashr1.lisanwanglab.org dashr1.lisanwanglab.org
    DASHR: database of human small non-coding RNAs
    1
    1. Nubia_Casillas 23 Aug 2022
      DASHR

      NARid: https://www.oxfordjournals.org/nar/database/summary/1840

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580695

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    dashr1.lisanwanglab.org/smdb.php
  125. trna.bioinf.uni-leipzig.de trna.bioinf.uni-leipzig.de
    tRNAdb - Transfer RNA database
    1
    1. Nubia_Casillas 23 Aug 2022
      Introduction

      NARid: https://www.oxfordjournals.org/nar/database/summary/251

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580621

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    trna.bioinf.uni-leipzig.de/DataOutput/
  126. srv00.recas.ba.infn.it srv00.recas.ba.infn.it
    REDIportal
    1
    1. Nubia_Casillas 23 Aug 2022
      REDIportal

      NARid: https://www.oxfordjournals.org/nar/database/summary/1962

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580590

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    srv00.recas.ba.infn.it/atlas/index.html
  127. greengenes.lbl.gov greengenes.lbl.gov
    Index of /Download/
    1
    1. Nubia_Casillas 23 Aug 2022
      Index

      NARid: https://www.oxfordjournals.org/nar/database/summary/878

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580538

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    greengenes.lbl.gov/Download/
  128. dianalab.e-ce.uth.gr dianalab.e-ce.uth.gr
    DIANA tools - Tarbase v8 Statistics
    1
    1. Nubia_Casillas 22 Aug 2022
      Total Entries: 1080276

      stats

      BioDBS
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    dianalab.e-ce.uth.gr/html/diana/web/index.php
  129. 120.110.158.132:8787 120.110.158.132:8787
    YM500v3
    1
    1. Nubia_Casillas 22 Aug 2022
      YM500

      NARid: https://www.oxfordjournals.org/nar/database/summary/1601

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580287

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    120.110.158.132:8787/ym500v3/
  130. www.rna-society.org www.rna-society.org
    Home
    1
    1. Nubia_Casillas 22 Aug 2022
      ViRBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/1791

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113580095

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    rna-society.org/virbase/
  131. konulab.fen.bilkent.edu.tr konulab.fen.bilkent.edu.tr
    mESAdb: miRNA sequence and expression database
    1
    1. Nubia_Casillas 22 Aug 2022
      database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1455

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q16335188

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    konulab.fen.bilkent.edu.tr/mirna/mirna.php
  132. www.mirbase.org www.mirbase.org
    miRBase
    1
    1. Nubia_Casillas 20 Aug 2022
      miRBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/529

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q6826947

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    mirbase.org/
  133. www.iresite.org www.iresite.org
    IRESite: Page home
    1
    1. Nubia_Casillas 20 Aug 2022
      IRESite

      NARid: https://www.oxfordjournals.org/nar/database/summary/831

      NARCategory: RNA sequence databases

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    iresite.org/
  134. snoopy.med.miyazaki-u.ac.jp snoopy.med.miyazaki-u.ac.jp
    snoRNA Orthological Gene Database
    1
    1. Nubia_Casillas 20 Aug 2022
      snOPY

      NARid: https://www.oxfordjournals.org/nar/database/summary/1750

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113560633

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    snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi
  135. bio-bigdata.hrbmu.edu.cn bio-bigdata.hrbmu.edu.cn
    LincSNP3.0
    1
    1. Nubia_Casillas 20 Aug 2022
      LincSNP 3.0

      NARid: https://www.oxfordjournals.org/nar/database/summary/1918

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113560542

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    bio-bigdata.hrbmu.edu.cn/lincsnp/
  136. deny.tsinghua.edu.cn deny.tsinghua.edu.cn
    提示
    1
    1. Nubia_Casillas 20 Aug 2022
      登录服务

      NARid: https://www.oxfordjournals.org/nar/database/summary/984

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113560531

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    deny.tsinghua.edu.cn/
  137. 111.198.139.65 111.198.139.65
    POSTAR3
    1
    1. Nubia_Casillas 20 Aug 2022
      POSTAR3

      NARid: https://www.oxfordjournals.org/nar/database/summary/1922 https://www.oxfordjournals.org/nar/database/summary/2049

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113560445

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    111.198.139.65/
  138. crdd.osdd.net crdd.osdd.net
    VIRsiRNAdb
    1
    1. Nubia_Casillas 20 Aug 2022
      VIRsiRNAdb

      NARid: https://www.oxfordjournals.org/nar/database/summary/1467

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q7907064

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    crdd.osdd.net/servers/virsirnadb/
  139. genome.bioch.virginia.edu genome.bioch.virginia.edu
    tRFdb - A relational database of Transfer RNA related Fragments
    1
    1. Nubia_Casillas 19 Aug 2022
      tRFs

      NARid: https://www.oxfordjournals.org/nar/database/summary/1770

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113560043

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    genome.bioch.virginia.edu/trfdb/
  140. starbase.sysu.edu.cn starbase.sysu.edu.cn
    ENCORI: The Encyclopedia of RNA Interactomes.
    1
    1. Nubia_Casillas 19 Aug 2022
      starBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/1447

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q7600527

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    starbase.sysu.edu.cn/
  141. lncipedia.org lncipedia.org
    LNCipedia
    1
    1. Nubia_Casillas 19 Aug 2022
      LNCipedia

      NARid: https://www.oxfordjournals.org/nar/database/summary/1599 https://www.oxfordjournals.org/nar/database/summary/2040

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q24255327

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    lncipedia.org/
  142. diana.e-ce.uth.gr diana.e-ce.uth.gr
    DIANA Tools - lncBase v.3
    1
    1. Nubia_Casillas 18 Aug 2022
      database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1598

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113553153

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    diana.e-ce.uth.gr/lncbasev3
  143. pirnabank.ibab.ac.in pirnabank.ibab.ac.in
    piRNA Database
    1
    1. Nubia_Casillas 18 Aug 2022
      piRNABank

      NARid: https://www.oxfordjournals.org/nar/database/summary/1114

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113553084

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    pirnabank.ibab.ac.in/
  144. www.ezlab.org www.ezlab.org
    EZlab | Computational Evolutionary Genomics group
    1
    1. Nubia_Casillas 18 Aug 2022
      Bioinformatics

      NARid:https://www.oxfordjournals.org/nar/database/summary/1232

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113553021

      NARdb biodatabases wikidata
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    ezlab.org/
  145. people.biochem.umass.edu people.biochem.umass.edu
    3D RIBOSOMAL MODIFICATION MAPS DATABASE at UMASS Amherst - Fournier Lab
    1
    1. Nubia_Casillas 18 Aug 2022
      3D RIBOSOMAL MODIFICATION MAPS DATABASE

      NARid: https://www.oxfordjournals.org/nar/database/summary/1041

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113552929

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    people.biochem.umass.edu/fournierlab/3dmodmap/main.php
  146. combio.pl combio.pl
    5S rRNA | Welcome
    1
    1. Nubia_Casillas 18 Aug 2022
      5S rRNA Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/230

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113548443

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    combio.pl/rrna/
  147. rhesus.amu.edu.pl rhesus.amu.edu.pl
    miRNEST 2.0, an integrative microRNA resource
    1
    1. Nubia_Casillas 18 Aug 2022
      miRNEST

      NARid: https://www.oxfordjournals.org/nar/database/summary/1465

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q6826949

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    rhesus.amu.edu.pl/mirnest/copy/
  148. www.rna-society.org www.rna-society.org
    RNALocate
    1
    1. Nubia_Casillas 18 Aug 2022
      RNALocate

      NARid: https://www.oxfordjournals.org/nar/database/summary/1925

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113548337

      NARdb biodatabases wikidata
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    rna-society.org/rnalocate/
  149. mirgator.kobic.re.kr mirgator.kobic.re.kr
    miRGator3.0
    1
    1. Nubia_Casillas 17 Aug 2022
      miRGator

      NARid: https://www.oxfordjournals.org/nar/database/summary/1098

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q6826948

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    mirgator.kobic.re.kr/
  150. www.smallrnagroup-mainz.de www.smallrnagroup-mainz.de
    smallrnagroup-mainz.de
    1
    1. Nubia_Casillas 17 Aug 2022
      smallrnagroup

      NARid: https://www.oxfordjournals.org/nar/database/summary/1841

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113547180

      NARdb biodatabases wikidata
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    smallrnagroup-mainz.de/piRNAclusterDB.html
  151. c1.accurascience.com c1.accurascience.com
    miRecords
    1
    1. Nubia_Casillas 17 Aug 2022
      miRNA

      NARid: https://www.oxfordjournals.org/nar/database/summary/1278

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113538474

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    c1.accurascience.com/miRecords/
  152. ngdc.cncb.ac.cn ngdc.cncb.ac.cn
    LncRNAWiki
    1
    1. Nubia_Casillas 17 Aug 2022
      LncRNAWiki

      NARid: https://www.oxfordjournals.org/nar/database/summary/1768

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113537358

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    ngdc.cncb.ac.cn/lncrnawiki1/index.php/Main_Page
  153. tpsic.igcz.poznan.pl tpsic.igcz.poznan.pl
    ¡Descubra la mejor base de datos de ARNt disponible! - Base de datos T-Psi-C
    1
    1. Nubia_Casillas 17 Aug 2022
      tRNA database

      NARid: https://www.oxfordjournals.org/nar/database/summary/2084

      NARCategory: RNA sequence databases

      WD: https://www.wikidata.org/wiki/Q113537336

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    tpsic.igcz.poznan.pl/info/start/
  154. compgenomics.utsa.edu compgenomics.utsa.edu
    RNA Methylation
    1
    1. Nubia_Casillas 17 Aug 2022
      (MeT-DB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1771

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q112678679

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    compgenomics.utsa.edu/methylation/
  155. sysbio.gzzoc.com sysbio.gzzoc.com
    RPFdb-Home
    1
    1. Nubia_Casillas 16 Aug 2022
      RPFdb

      NARid: https://www.oxfordjournals.org/nar/database/summary/1842

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113536088

      biodatabases NARdb wikidata
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    sysbio.gzzoc.com/rpfdb/index.html
  156. sysbio.gzzoc.com sysbio.gzzoc.com
    RPFdb-Statistics
    1
    1. Nubia_Casillas 16 Aug 2022
      Current curation

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    sysbio.gzzoc.com/rpfdb/statistics.html
  157. bioinformatics.psb.ugent.be bioinformatics.psb.ugent.be
    The European ribosomal RNA database
    1
    1. Nubia_Casillas 13 Aug 2022
      the European ribosomal RNA database

      NARid: https://www.oxfordjournals.org/nar/database/summary/463

      NARCategory: RNA sequence databases

      wd: https://www.wikidata.org/wiki/Q113509741

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    bioinformatics.psb.ugent.be/webtools/rRNA/
  158. iimcb.genesilico.pl iimcb.genesilico.pl
    RNA Bricks - a database of RNA 3D structure motifs and their interactions
    1
    1. Nubia_Casillas 09 Aug 2022
      RNA Bricks

      NARid: https://www.oxfordjournals.org/nar/database/summary/1688

      NARCategory: Structure Databases Subcategory: Nucleic acid structure

      WD: https://www.wikidata.org/wiki/Q112681020

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    iimcb.genesilico.pl/rnabricks
  159. iimcb.genesilico.pl iimcb.genesilico.pl
    RNA Bricks - a database of RNA 3D structure motifs and their interactions
    1
    1. Nubia_Casillas 09 Aug 2022
      Staistics generated

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      BioDBS
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    iimcb.genesilico.pl/rnabricks/statistics_of_rna_3d_motifs
  160. 3did.irbbarcelona.org 3did.irbbarcelona.org
    3did
    1
    1. Nubia_Casillas 09 Aug 2022
      database of three-dimensional interacting domain

      NARid: https://www.oxfordjournals.org/nar/database/summary/633

      NARCategory: Structure Databases Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q4636605

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    3did.irbbarcelona.org/
  161. prodata.swmed.edu prodata.swmed.edu
    Evolutionary Classification of Protein Domains
    1
    1. Nubia_Casillas 09 Aug 2022
      ECOD statistics

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      BioDBS
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    prodata.swmed.edu/ecod/
  162. www.ebi.ac.uk www.ebi.ac.uk
    SIFTS < PDBe < EMBL-EBI
    1
    1. Nubia_Casillas 08 Aug 2022
      integration

      NARid: https://www.oxfordjournals.org/nar/database/summary/1615

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112658076

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    ebi.ac.uk/pdbe/docs/sifts/
  163. www.ebi.ac.uk www.ebi.ac.uk
    SIFTS (Statistics)< PDBe < EMBL-EBI
    1
    1. Nubia_Casillas 08 Aug 2022
      SIFTS statistics

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    ebi.ac.uk/pdbe/docs/sifts/statistics.html
  164. cdb.ics.uci.edu cdb.ics.uci.edu
    ChemDB Web Interface Index
    1
    1. Nubia_Casillas 08 Aug 2022
      Molecules

      NARid: https://www.oxfordjournals.org/nar/database/summary/1023

      NARCategory: Structure Databases Subcategory: Small molecules

      WD: https://www.wikidata.org/wiki/Q112679813

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    cdb.ics.uci.edu/
  165. spock.genes.nig.ac.jp spock.genes.nig.ac.jp
    GTOP database
    1
    1. Nubia_Casillas 08 Aug 2022
      Genomes

      NARid: https://www.oxfordjournals.org/nar/database/summary/322

      NARCategory: Structure Databases Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112657039

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    spock.genes.nig.ac.jp/~genome/gtop.html
  166. bioinformatics.charite.de bioinformatics.charite.de
    mVOC 3.0
    1
    1. Nubia_Casillas 08 Aug 2022
      mVOC 3.0 Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1687

      NARCategory: Structure Databases Subcategory: Small molecules

      WD: https://www.wikidata.org/wiki/Q113092962

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    bioinformatics.charite.de/mvoc/
  167. Jun 2022
  168. jowisz.ifpan.edu.pl jowisz.ifpan.edu.pl
    BSDB - Homepage
    1
    1. Nubia_Casillas 15 Jun 2022
      BSDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1300

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q4915153

      NARdb biodatabases wikidata
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    jowisz.ifpan.edu.pl/BSDB/
  169. coiledcoils.chm.bris.ac.uk coiledcoils.chm.bris.ac.uk
    The CC+ Database | Search | How would you like to search?
    1
    1. Nubia_Casillas 15 Jun 2022
      CC+

      NARid: https://www.oxfordjournals.org/nar/database/summary/1215

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112585187

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    coiledcoils.chm.bris.ac.uk/ccplus/search/
  170. pdbtm.enzim.hu pdbtm.enzim.hu
    .: PDBTM: Protein Data Bank of Transmembrane Proteins :.
    2
    1. Nubia_Casillas 15 Jun 2022
      PDBTM

      NARid: https://www.oxfordjournals.org/nar/database/summary/619

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112584951

      NARdb biodatabases wikidata
    2. Nubia_Casillas 15 Jun 2022
      Statistics

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    pdbtm.enzim.hu/
  171. www.minas.uzh.ch www.minas.uzh.ch
    MINAS - UZH
    1
    1. Nubia_Casillas 15 Jun 2022
      MINAS

      NARid: https://www.oxfordjournals.org/nar/database/summary/1485

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      wd: https://www.wikidata.org/wiki/Q6716139

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    minas.uzh.ch/
  172. swissmodel.expasy.org swissmodel.expasy.org
    SWISS-MODEL Repository
    1
    1. Nubia_Casillas 15 Jun 2022
      SWISS-MODEL Repository

      NARid: https://www.oxfordjournals.org/nar/database/summary/585

      NARCategory: Structure Databases Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q109495038

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    swissmodel.expasy.org/repository/
  173. caps.ncbs.res.in caps.ncbs.res.in
    PASS 2.7
    1
    1. Nubia_Casillas 02 Jun 2022
      PASS2

      NARid: https://www.oxfordjournals.org/nar/database/summary/275

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q85719937

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    caps.ncbs.res.in/pass2/
  174. sbi.imim.es sbi.imim.es
    ArchDB
    1
    1. Nubia_Casillas 02 Jun 2022
      ArchDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/413

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112205944

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    sbi.imim.es/archdb/
  175. compbio.buffalo.edu compbio.buffalo.edu
    Decoys 'R' Us - A Database of Incorrect Protein Conformations (v1.3)
    1
    1. Nubia_Casillas 02 Jun 2022
      Decoys 'R' Us

      NARid: https://www.oxfordjournals.org/nar/database/summary/385

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112205035

      NARdb biodatabases wikidata
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    compbio.buffalo.edu/dd//
  176. www.genome.jp www.genome.jp
    KEGG GLYCAN Database
    1
    1. Nubia_Casillas 02 Jun 2022
      KEGG GLYCAN

      NARid: https://www.oxfordjournals.org/nar/database/summary/486

      NARCategory: Structure Databases

      Subcategory: Carbohydrates

      wd: https://www.wikidata.org/wiki/Q112204584

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    genome.jp/kegg/glycan/
  177. possum.cbrc.jp possum.cbrc.jp
    PoSSuM
    1
    1. Nubia_Casillas 02 Jun 2022
      PoSSuM

      NARid: https://www.oxfordjournals.org/nar/database/summary/1499

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112203970

      NARdb biodatabases wikidata
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    possum.cbrc.jp/PoSSuM/
  178. jenalib.leibniz-fli.de jenalib.leibniz-fli.de
    JenaLib - Home
    1
    1. Nubia_Casillas 02 Jun 2022
      Jena Library of Biological Macromolecules

      NARid: https://www.oxfordjournals.org/nar/database/summary/267

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112202384

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    jenalib.leibniz-fli.de/
  179. ndbserver.rutgers.edu ndbserver.rutgers.edu
    Nucleic Acid Database (NDB)
    1
    1. Nubia_Casillas 02 Jun 2022
      NDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/272

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      wd: https://www.wikidata.org/wiki/Q112202228

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    ndbserver.rutgers.edu/
  180. scop.berkeley.edu scop.berkeley.edu
    SCOPe: Structural Classification of Proteins — extended. Release 2.08 (updated 2022-05-16, stable release September 2021)
    1
    1. Nubia_Casillas 02 Jun 2022
      SCOPe

      NARid: https://www.oxfordjournals.org/nar/database/summary/255

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112202083

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    scop.berkeley.edu/
  181. molmovdb.mbb.yale.edu molmovdb.mbb.yale.edu
    Database of Macromolecular Movements
    1
    1. Nubia_Casillas 02 Jun 2022
      Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/262

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q5227408

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    molmovdb.mbb.yale.edu/molmovdb/
  182. www.imgt.org www.imgt.org
    IMGT Home page
    1
    1. Nubia_Casillas 02 Jun 2022
      IMGT®

      NARid: https://www.oxfordjournals.org/nar/database/summary/502

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q112201140

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    imgt.org/
  183. 211.25.251.163 211.25.251.163
    InterRNA
    1
    1. Nubia_Casillas 02 Jun 2022
      InterRNA

      NARid: https://www.oxfordjournals.org/nar/database/summary/1844

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      wd: https://www.wikidata.org/wiki/Q112200578

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    211.25.251.163/interrna/
  184. pubchem.ncbi.nlm.nih.gov pubchem.ncbi.nlm.nih.gov
    The PubChem Project
    1
    1. Nubia_Casillas 01 Jun 2022
      chemical information

      NARid: vhttps://www.oxfordjournals.org/nar/database/summary/735

      NARCategory: Structure Databases

      Subcategory: Small molecules

      wd: https://www.wikidata.org/wiki/Q278487

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    pubchem.ncbi.nlm.nih.gov/
  185. modbase.compbio.ucsf.edu modbase.compbio.ucsf.edu
    ModBase Search Page
    1
    1. Nubia_Casillas 01 Jun 2022
      ModBase

      NARid: https://www.oxfordjournals.org/nar/database/summary/331

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd: https://www.wikidata.org/wiki/Q6887948

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    modbase.compbio.ucsf.edu/
  186. crdd.osdd.net crdd.osdd.net
    Hemolytik: Database of hemolytic peptides
    1
    1. Nubia_Casillas 01 Jun 2022
      Hemolytik

      NARid: https://www.oxfordjournals.org/nar/database/summary/1686

      NARCategory: Structure Databases

      Subcategory: Small molecules

      wd: https://www.wikidata.org/wiki/Q112196168

      biodatabases wikidata NARdb
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    crdd.osdd.net/raghava/hemolytik/
  187. May 2022
  188. www.ccdc.cam.ac.uk www.ccdc.cam.ac.uk
    The Cambridge Structural Database (CSD)​ ​- The Cambridge Crystallographic Data Centre (CCDC)
    1
    1. Nubia_Casillas 30 May 2022
      Cambridge Structural Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/261

      NARCategory: Structure Databases

      Subcategory: Small molecules

      WD: https://www.wikidata.org/wiki/Q2166958

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    ccdc.cam.ac.uk/solutions/csd-core/components/csd/
  189. www.bio2byte.be www.bio2byte.be
    Start2Fold
    1
    1. Nubia_Casillas 28 May 2022
      Start2Fold

      NARid: https://www.oxfordjournals.org/nar/database/summary/1852

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112148707

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    bio2byte.be/start2fold/
  190. pcddb.cryst.bbk.ac.uk pcddb.cryst.bbk.ac.uk
    Welcome to the Protein Circular Dichroism Data Bank (PCDDB)
    1
    1. Nubia_Casillas 27 May 2022
      PCDDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1430

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q7251458

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    pcddb.cryst.bbk.ac.uk/
  191. mmb.irbbarcelona.org mmb.irbbarcelona.org
    Molecular Modeling and Bioinformatics Group
    1
    1. Nubia_Casillas 27 May 2022
      BIGNASim

      NARid: https://www.oxfordjournals.org/nar/database/summary/1845

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      WD: https://www.wikidata.org/wiki/Q112147678

      NARdb Biodatabases wikidata
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    mmb.irbbarcelona.org/BigNASim/
  192. mmb.irbbarcelona.org mmb.irbbarcelona.org
    Molecular Modeling and Bioinformatics Group
    1
    1. Nubia_Casillas 27 May 2022
      ParmBSC1

      stats

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    mmb.irbbarcelona.org/ParmBSC1/stats.php
  193. upjv.q4md-forcefieldtools.org upjv.q4md-forcefieldtools.org
    RESP ESP charge DDataBase: R.E.DD.B.
    1
    1. Nubia_Casillas 27 May 2022
      R.E.DD.B

      NARId: https://www.oxfordjournals.org/nar/database/summary/1127

      NARCategory: Structure Databases

      Subcategory: Small molecules

      WD: https://www.wikidata.org/wiki/Q112147525

      NARdb Biodatabases wikidata
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    upjv.q4md-forcefieldtools.org/REDDB/
  194. pdbj.org pdbj.org
    Statistics - Protein Data Bank Japan
    1
    1. Nubia_Casillas 27 May 2022
      Statistics

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    pdbj.org/info/statistics
  195. repeatsdb.org repeatsdb.org
    RepeatsDB
    1
    1. Nubia_Casillas 25 May 2022
      RepeatsDB

      NARid: https://www.oxfordjournals.org/nar/database/summary/1691

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112125487

      NARdb Biodatabases wikidata
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    repeatsdb.org/
  196. www.bioinsilico.org www.bioinsilico.org
    CAPS Database
    1
    1. Nubia_Casillas 25 May 2022
      CAPS - Database

      NARid: https://www.oxfordjournals.org/nar/database/summary/1489

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112125426

      NARdb Biodatabases wikidata
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    bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home
  197. scop.mrc-lmb.cam.ac.uk scop.mrc-lmb.cam.ac.uk
    SCOP| Structural Classification of Proteins
    1
    1. Nubia_Casillas 25 May 2022
      SCOP

      NARid: https://www.oxfordjournals.org/nar/database/summary/282

      NARCategory: Structure Databases

      Subcategory: Protein structure

      wd; https://www.wikidata.org/wiki/Q4832556

      NARdb Biodatabases wikidata
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    scop.mrc-lmb.cam.ac.uk/
  198. rna.urmc.rochester.edu rna.urmc.rochester.edu
    NNDB Home
    1
    1. Nubia_Casillas 25 May 2022
      Nearest Neighbor

      NARid: https://www.oxfordjournals.org/nar/database/summary/1349

      NARCategory: Structure Databases

      Subcategory: Nucleic acid structure

      WD: https://www.wikidata.org/wiki/Q112125136

      NARdb Biodatabases wikidata
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    rna.urmc.rochester.edu/NNDB/
  199. www.cgl.ucsf.edu www.cgl.ucsf.edu
    UCSF Chimera Home Page
    1
    1. Nubia_Casillas 25 May 2022
      Download

      NARid: https://www.oxfordjournals.org/nar/database/summary/583

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112124753

      NARdb Biodatabases wikidata
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    cgl.ucsf.edu/chimera/
  200. pdbj.org pdbj.org
    PDBj top page - Protein Data Bank Japan
    1
    1. Nubia_Casillas 25 May 2022
      PDBj

      NARid: https://www.oxfordjournals.org/nar/database/summary/1487

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q55824052

      NARdb Biodatabases wikidata
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    pdbj.org/
  201. cluster.physics.iisc.ernet.in cluster.physics.iisc.ernet.in
    Conformation Angles Database
    1
    1. Nubia_Casillas 24 May 2022
      Experiment Metho

      NARid: https://www.oxfordjournals.org/nar/database/summary/384

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112123155

      NARdb Biodatabases wikidata
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    cluster.physics.iisc.ernet.in/cadb/input.html
  202. pisite.sb.ecei.tohoku.ac.jp pisite.sb.ecei.tohoku.ac.jp
    PiSITE
    1
    1. Nubia_Casillas 24 May 2022
      PiSITE

      NARid: https://www.oxfordjournals.org/nar/database/summary/1208

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q112123090

      NARdb Biodatabases wikidata
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    pisite.sb.ecei.tohoku.ac.jp/cgi-bin/top.cgi
  203. www.ebi.ac.uk www.ebi.ac.uk
    PDBsum home page
    1
    1. Nubia_Casillas 24 May 2022
      PDBsum

      NARid: https://www.oxfordjournals.org/nar/database/summary/278

      NARCategory: Structure Databases

      Subcategory: Protein structure

      WD: https://www.wikidata.org/wiki/Q7118755

      NARdb Biodatabases wikidata
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    ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl
  204. csdb.glycoscience.ru csdb.glycoscience.ru
    Russian CSDB
    1
    1. Nubia_Casillas 24 May 2022
      Version 2.

      NARid: https://www.oxfordjournals.org/nar/database/summary/1904

      NARCategory: Structure Databases Subcategory: Carbohydrates

      WD: https://www.wikidata.org/wiki/Q30314215

      NARdb Biodatabases wikidata
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    csdb.glycoscience.ru/