- Oct 2019
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academic.oup.com academic.oup.com
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___ Examples of references. Note that when citing RRIDs, the URL must follow the citation format as shown below: Journal Citation: Binoux M, Hossenlopp P. Insulin-like growth factor (IGF) and IGF-binding proteins: comparison of human serum and lymph. J Clin Endocrinol Metab. 1988;67(3):509–514. Abstract Citation: MacLaughlin DT, Cigarros F, Donahoe PK. Mechanism of action of Mullerian inhibiting substance. Program of the 70th Annual Meeting of the Endocrine Society, New Orleans, LA, 1988, p 19 (Abstract P1-21). Book Citation: Bonneville F, Cattin F, Dietemann J-L. Computed tomography of the pituitary gland. Heidelberg: Springer-Verlag; 1986; 15–16. Book Chapter Citation: Burrow GN The Thyroid: nodules and neoplasia. In: Felig P, Baxter JD, Broadus AE, Frohman LA, eds. Endocrinology and metabolism. 2nd ed. New York: McGraw-Hill; 1987:473–507. Repository Citation: Brown C, Jones M, Cohen M. Data from: Medical device-regulation process: review of safety notices and alerts. Dryad Digital Repository 2017. Deposited 2 January 2018. http://doi.org/10.9561/dryad.585t4 Antibody Citation: RRID:AB_2629219 Cell Line Citation: RRID:CVCL_1H60 Organism Citation: RRID:MMRRC_048263-UCD Plasmid Citation: RRID:ADDGENE_104005 Tool Citation: RRID:SCR_007358
here
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academic.oup.com academic.oup.com
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recommended name (most frequently, the name provided in the referenced publication) and a list of synonyms;
...and yet when the authors of a paper register for an RRID, which they put into the paper you are linking to, you ignore that fact and give the antibody your own identifier without cross linking ...? Here is where I am looking: https://web.expasy.org/abcd/ABCD_AG351 You list this paper as the place where the author describes the antibody: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182123/ In the paper, the author describes the antibody as: "Monoclonal antibodies (mouse immunoglobulin-γ (IgG)) that bind to GluN1 ATD (RRID: AB_2629508) from Xenopus laevis and Rattus norvegicus were made by immunizing mice with the purified intact GluN1a-GluN2B NMDA receptor (Tajima et al., 2016)." Please note, the author obtained an RRID from the antibodyregistry.org prior to publication of the manuscript, it is nice that you linked the reagents to Uniprot, but I find it disturbing that you ignore the work put in by authors and journal editors to uniquely identify these reagents.
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elifesciences.org elifesciences.org
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RRID:MGI:5882597
Please note, this is not an RRID, it marks the allele; to see the appropriate record for please go to http://www.informatics.jax.org/allele/MGI:5882597
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- Sep 2019
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www.nature.com www.nature.com
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Early-career researchers do not need to wait passively for coveted improvements. We can create communities and push for bottom-up change.
This is a really important call to action.
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scicrunch.xtensio.com scicrunch.xtensio.com
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October
december
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limit
reduce?
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Because SciScore is completely automated, it is able to operate with far more consistency and speed than peer reviewers, while still picking up even the most minute details.
Because SciScore is automated, it is a scalable solution, independent of peer reviewers. SciScore gives journals a metric on quality and a means to enforce basic rigor criteria.
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publishers
for peer review
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surprisingly
remove
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their
remove
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later reproduce the experiment being analyzed.
find the tool
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SciCrunch Inc. was founded in October of 2015 by Drs. Bandrowski and Martone. They have been focused on reproducibility-based issues in the contemporary sciences over the last 15+ years and have developed and lead hundreds of people across dozens of projects during that time including Force11 and the Resource Identification Initiative, which gave rise to the RRID standard now used throughout thousands of journals.
odd phrasing; may want to crib some of this from the grant text
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founding
odd
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Secured NIH funding.
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As a result, this limits the time spent on each research paper, increasing a publisher’s efficiency and the overall reproducibility of research published.
shorten or remove
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submitted to publishers, and increasing reproducibility due to better methods reporting.
check grammar phrasing seems odd
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Peer reviewers are doing a subpar job in enforcing best practices as they focus their attention more on the science and less on the small yet surprisingly important details of the methods.
peer reviewers are not good at enforcing standards and best practices for the journal. They focus on ... someone or something needs to assess the things they miss
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- Aug 2019
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m-cacm.acm.org m-cacm.acm.org
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despite using datasets identical to the originals.
This is misleading. The paper from Amgen was not a computational replication, so datasets is not the right word, they tried to reproduce the biology and couldn't. This gives the place where wet lab reagents are discussed: https://hyp.is/O9mjSskWEemOE_NFRtyf8A/www.nature.com/articles/483531a Models are also discussed and that can be an ambiguous word, in biology a model is very frequently able to escape the cage or the lab. It is seldom computational. The statement can be valid of computational models as well, but I suspect that the problems in reproducibility have a different flavor.
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an attempt was made to contact the original authors, discuss the discrepant findings, exchange reagents and repeat experiments under the authors' direction, occasionally even in the laboratory of the original investigator
*
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docs.sparc.science docs.sparc.science
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downloaded as a zip file
here
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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knockdown
my favorite activity
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- Jul 2019
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elifesciences.org elifesciences.org
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For SciScore, we used standard measures for classification performance: precision P, recall R, and harmonic mean of precision and recall F1. These are defined by the following formulas: the number (#) of correctly recognized labels refers to the number of words that are recognized as cell lines, which were also a cell line according to the curators. The number (#) of true good labels refers to the total number of cell lines according to the curators. P, R, and F1 are calculated on each 10% test set. P= (# of correctly recognized good labels) / (# of recognized good labels) R= (# of correctly recognized good labels) / (# of true good labels) F1=(2*P*R) / (P+R)
this part explains the standard formula for this.
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scicrunch.org scicrunch.org
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Related to
Here
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- May 2019
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www.nature.com www.nature.com
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SciBot.
SciBot lives here: https://github.com/SciCrunch/scibot
Featured in this remarkably eLife paper (repo was copied to eLife as part of the process of publishing): https://elifesciences.org/articles/41676
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www.sciencedirect.com www.sciencedirect.com
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MGI_4819951
MGI Cat# 4819951, RRID:MGI_4819951
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- Apr 2019
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link.springer.com link.springer.com
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while the Resource Identification Initiative portal [13] contains mainly technologies from PubMed that were manually annotated by curators.
This is not exactly true, PubMed does not talk about tools because it is an abstract service, tools are discussed in the methods section; furthermore, the initiative uses a hybrid human/machine approach by using the Hypothesis client and a nice custom reader, called scibot. https://github.com/SciCrunch/scibot This enables automated mining and human verification of RRIDs, 180K of them ...and counting.<br> Here is the data we have mined for this one antibody, https://scicrunch.org/resolver/RRID:AB_90755
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cancerres.aacrjournals.org cancerres.aacrjournals.org
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Abstract A08: Extensive subclonal mutations in human colorectal cancers detected by Duplex Sequencing
Should this also be retracted? https://retractionwatch.com/2019/04/02/former-university-of-washington-researcher-faked-data-say-feds/
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cancerres.aacrjournals.org cancerres.aacrjournals.org
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Abstract LB-338: Extensive subclonal mutations in human colorectal cancers detected by duplex sequencing
Should this also be retracted? https://retractionwatch.com/2019/04/02/former-university-of-washington-researcher-faked-data-say-feds/
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www.bioone.org www.bioone.org
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MetaMorph® software (version 7.7, Universal Imaging, RRID:SciRes_000136
Tags
Annotators
URL
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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ImageJ, RRID:nif-0000-30467
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UniProt, RRID:nif-0000-00377
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Number of papers published per year from 1912–2012 containing the term “drug addiction” or “food addiction” in the title or abstract. Results from a Pubmed search on 11/08/13, using tools from the Neuroscience Information
Number of papers published per year from 1912–2012 containing the term “drug addiction” or “food addiction” in the title or abstract. Results from a Pubmed search on 11/08/13, using tools from the Neuroscience Information Framework (NIF). RIID:nif-0000-25673
Tags
Annotators
URL
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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RRID:nif-0000–10294
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www.sciencedirect.com www.sciencedirect.com
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Cat# 8242S; RRID: 10860244
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- Mar 2019
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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disorders
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Peter's anomaly
this is a public note
Tags
Annotators
URL
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patents.google.com patents.google.com
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sc-138763 from Santa Cruz Biotechnology Inc
" A troubling finding of our study is that the rabbit polyclonal antibody SC-138763, which clearly does not recognize C9ORF72 in any application, has been used in 15 published manuscripts to ascribe specific properties to the protein in normal and disease states (Table 1). " https://doi.org/10.1101/499350
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- Jan 2019
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elifesciences.org elifesciences.org
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for example if a cell line is known to be contaminated
This section down is the relevant to the paper part
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- Nov 2018
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orcid.org orcid.org
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RRID: RRID:SCR_006397
this is my record for heading the antibody registry
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- Aug 2018
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Jax:004453; RRID:IMSR_JAX:004453
Click here
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- Jul 2018
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www.sciencedirect.com www.sciencedirect.com
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CD43BD PharMingenClone S7; RRID: AB_10895376
last one
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www.sciencedirect.com www.sciencedirect.com
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anti-hCD49b-PEBDCat#555669; RRID: AB_396022
another one
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www.sciencedirect.com www.sciencedirect.com
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BD BiosciencesCat#565564; RRID:AB_2722547
this one
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- Jun 2018
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www.cell.com www.cell.com
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Resource information A simple three-column table allows full reporting of reagent and resource information, including their source and identifiers.
Here is the table, with RRIDs
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- May 2018
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice.
Drs. Chessler and Bogue discuss the Mouse Phenome Database in this webinar, recorded on Apr 27, 2018 https://youtu.be/T-_yo1H0CIo?t=1s
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.
Drs. Chessler and Bogue discuss the Mouse Phenome Database in this webinar, recorded on Apr 27, 2018 https://youtu.be/T-_yo1H0CIo?t=1s
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academic.oup.com academic.oup.com
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Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice
Drs. Chessler and Bogue discuss the Mouse Phenome Database in this webinar, recorded on Apr 27, 2018 https://youtu.be/T-_yo1H0CIo?t=1s
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Uniform resolution of compact identifiers for biomedical data.
You could read all this, or you could just watch the movie. Dr. Wimalaratne discusses compact identifiers as part of the Neuro-Tools webinar series, on April 20, 2018
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Uniform resolution of compact identifiers for biomedical data
You could read all this, or you could just watch the movie. Dr. Wimalaratne discusses compact identifiers as part of the Neuro-Tools webinar series, on April 20, 2018
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- Mar 2018
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orcid.org orcid.org
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Neuroscience Information Framework (NIF) Encyclopedia of Computational Neuroscience 2015 | other DOI: 10.1007/978-1-4614-6675-8_459
here it is
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- Feb 2018
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www.sciencedirect.com www.sciencedirect.com
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However, Simson (2016) has pointed out that the relabeling of antibodies for commercial sale results in the same antibody being available from multiple sources, negating or diminishing the value of the RRID.
While Mike Simson's blog on Linked in is very well reasoned, it is completely unfair that these authors dismiss our multi, year, multi-journal effort to improve scientific rigor in the literature by using a blog written by the CEO of a company that is showcasing their competitive advantage in the marketplace. If you are a scientist and going to talk yourself into inaction, because there remain imperfections in a multi billion dollar industry, then at least have the research prowess to use peer reviewed literature to do that. Citing a corporate blog here is a copout, as is this argument.
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- Nov 2017
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S-2000
I think that this is actually from Vector Labs; the RRID for that would be RRID:AB_2336617
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- Oct 2017
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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The Antibody Registry: Reagent: Antibodies - SciCrunch
Please open the LinkOut section then this note will be linked; We are not allowed by PubMed to provide individual links to antibodies, but we have them on our website.
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orcid.org orcid.org
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The AntibodyRegistry Database SciCrunch 2009 | other RRID: RRID:SCR_006397 http://identifiers.org/rrid/RRID%3ASCR_006397 URL: http://antibodyregistry.org http://antibodyregistry.org Source: AE Bandrowski Preferred source
This is not a paper, but an unpublished database; it is part of my ORCID record.
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www.fasebj.org www.fasebj.org
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Research Resource Identifiers. The FASEB Journal encourages the use of Research Resource Identifiers (RRIDs), which have been developed in support of NIH's guidelines for rigor and transparency in biomedical publications. RRIDs may be included with other, required, information in the Materials and Methods section, but may not be used as a substitute. Readers without access to RRID information must have enough information to replicate experiments. For more information about RRIDs, visit https://scicrunch.org/resources.
FASEB now asking for RRIDs
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Clone 1-5C-4
This paper may be using a contaminated cell line: http://web.expasy.org/cellosaurus/CVCL_2260
Tags
Annotators
URL
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journals.plos.org journals.plos.org
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such as title, abstract or keywords
Again this means that this search is basically missing most of the articles. They are not looking at any papers that do not specifically cite one of the papers that established the cell line, so anything that cites a paper that cited the main one is missing.
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This list holds 451 cell lines
This was only true when the list came out, this is now over 700 cell lines which will likely increase these estimates substantially! I wish they would given the accessed date for this number!
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www.fasebj.org www.fasebj.org
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"In the ORI report, published Sept. 29, 2017, the agency determined that El-Remessy had “intentionally, knowingly, or recklessly used the same Western blot bands to represent different experimental results” in three papers — a 2005 paper in Journal of Cell Science, a 2013 paper in PLOS ONE, and a 2007 paper in The FASEB Journal. The Journal Cell Science and The FASEB Journal papers have been retracted. The PLOS ONE paper, which has been cited nine times, according to Clarivate Analytics’ Web of Science, has not yet been corrected or retracted."
Tags
Annotators
URL
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journals.plos.org journals.plos.org
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"In the ORI report, published Sept. 29, 2017, the agency determined that El-Remessy had “intentionally, knowingly, or recklessly used the same Western blot bands to represent different experimental results” in three papers — a 2005 paper in Journal of Cell Science, a 2013 paper in PLOS ONE, and a 2007 paper in The FASEB Journal. The Journal Cell Science and The FASEB Journal papers have been retracted. The PLOS ONE paper, which has been cited nine times, according to Clarivate Analytics’ Web of Science, has not yet been corrected or retracted."
Tags
Annotators
URL
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jcs.biologists.org jcs.biologists.org
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"In the ORI report, published Sept. 29, 2017, the agency determined that El-Remessy had “intentionally, knowingly, or recklessly used the same Western blot bands to represent different experimental results” in three papers — a 2005 paper in Journal of Cell Science, a 2013 paper in PLOS ONE, and a 2007 paper in The FASEB Journal. The Journal Cell Science and The FASEB Journal papers have been retracted. The PLOS ONE paper, which has been cited nine times, according to Clarivate Analytics’ Web of Science, has not yet been corrected or retracted."
Tags
Annotators
URL
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- Aug 2017
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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Eteplirsen for the treatment of Duchenne muscular dystrophy
Retraction Watch article about this paper can be found here: http://retractionwatch.com/2017/08/21/released-fda-docs-reveal-details-agencys-failed-attempt-retract-paper/
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www.jneurosci.org www.jneurosci.org
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Scientific rigor: reproducibilityOn April 5, 2017, we added new guidelines for statistical reporting to the JNeurosci Instructions for Authors. While our reviewers have always commented on aspects of experimental design and statistical analyses when evaluating a manuscript, we wanted to create guidelines that would be relevant across the neuroscience field and support effective evaluation by reviewers that was consistent in its rigorous standards for future replication. To create these guidelines, we convened a group of editors with expertise in different subdisciplines. The updated guidelines derived from these discussions focus on including more details of experimental design and making sure that this information is contained within a single section of the Materials and Methods section, entitled Experimental design and statistical analysis, where it can be found more easily.Consistent with these efforts to improve rigor and reproducibility, JNeurosci also encourages authors to include RRIDs for critical reagents used in their studies, including antisera, mouse lines, cell lines, etc.
Here Dr. Picciotto discusses aligning the Journal of Neuroscience with the NIH guidelines for Rigor and Transparency.
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journals.plos.org journals.plos.org
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Spinal cord
this is a brain region
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cannabinoid
this is intereesting
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- May 2017
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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mouse monoclonal anti-EZH2 (PCRP-EZH2-1B3, Developmental Studies Hybridoma Bank
I recently validated through immunoblotting a monoclonal antibody against human EZH2 (anti-EZH2; AB_2618615) for detecting and quantifying its fly homologue, E(z), first by measuring E(z) knockdown via RNA interference and further by determining the target as E(z) with a published anti-E(z) antibody. - Author statement
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dharmacon.gelifesciences.com dharmacon.gelifesciences.com
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MGC Fully Sequenced Human CEL cDNA
Warning, this reagent is not what it appears to be! Please see Xia et al, JBC 2017: doi:10.1074/jbc.A116.734384 "We recently learned that the cDNA encoding CEL purchased from OpenBiosystems (clone ID 5187959; GenBankTM accession no. BC042510.1) for this work contains a three-base pair in-frame deletion resulting in p.E365del. (The correct sequence should be 356NKGNKKVTEEDFYKLVSEFTITKGL380 and not 356NKGNKKVTE-DFYKLVSEFTITKGL380.) p.E365 is conserved in most primates. The residue is located in a surface loop of the CEL globular domain distant from the catalytic site and the bile acid-binding site."
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- Apr 2017
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www.nature.com www.nature.com
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A proposal for validation of antibodies
This paper is the basis of an example Authentication of Key Biological Resources document that we and the UCSD library has put together. Please find it here: http://doi.org/10.6075/J0RB72JC
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blog.benchsci.com blog.benchsci.com
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AB_98765
Hey all this RRID does not actually resolve to anything, here is one that does as an example: RRID:AB_90755
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- Feb 2017
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antibodies: also report source, characteristics, dilutions and how they were validated
Antibodies called out specifically
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f1000research.com f1000research.com
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Figure 3. Percent correctly reported RRIDs.
shows accuracy of RRID to be 97% content, 70% syntax
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- Dec 2016
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www.icommutesd.com www.icommutesd.com
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Riding on sidewalks should be avoided and may be prohibited in some areas.
HA! Seriously, you need to ride on sidewalks at night if you want to live. Protected, Class I, bike lanes are fine otherwise I am on the sidewalk!
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www.sciencedirect.com www.sciencedirect.com
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Identified Cellular Correlates of Neocortical Ripple and High-Gamma Oscillations during Spindles of Natural Sleep
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- Nov 2016
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www.nature.com www.nature.com
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The Extracellular Matrix Protein Brevican Limits Time-Dependent Enhancement of Cocaine Conditioned Place Preference
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www.sciencedirect.com www.sciencedirect.com
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Hypoxia stimulates proliferation of rat neural stem cells with influence on the expression of cyclin D1 and c-Jun N-terminal protein kinase signaling pathway in vitro
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The following primary antibodies were used and incubated overnight at 4 °C: mouse monoclonal anti-cyclin D1 (1:1000, Neomarker, Fremont, CA, USA)
Neomarker check to see if this is a company bought by Thermo?
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www.sciencedirect.com www.sciencedirect.com
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Expression and purification of the nucleocapsid protein of Schmallenberg virus, and preparation and characterization of a monoclonal antibody against this protein
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f1000research.com f1000research.com
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Sigma-Aldrich Cat# I8765, RRID:AB_1163672
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300415
BioLegend Cat# 300415, RRID:AB_389310
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317409
BioLegend Cat# 317409, RRID:AB_571954
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344713
BioLegend Cat# 344713, RRID:AB_2044005
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325617
BioLegend Cat# 325617, RRID:AB_830690
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302227
BioLegend Cat# 302227, RRID:AB_893276
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304029
BioLegend Cat# 304029, RRID:AB_2174123
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307610
BioLegend Cat# 307610, RRID:AB_314688
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CD3 was immunostained by clone SP7 (a monoclonal rabbit antibody, diluted 1:150; Thermo Scientific, Waltham, Massachusetts, USA; cat. no. RM-9107)
Lab Vision Cat# RM-9107-R7, RRID:AB_149921 -Thermo product-
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M0755
Dako Cat# M0755, RRID:AB_2282030
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f1000research.com f1000research.com
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AB_228382
RRID:AB_228382
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AB_258103
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f1000research.com f1000research.com
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AB_2068336
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AB_476894
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D28K07 (F)
RRID:AB_2314070 - not an exact match as there is no catalog number
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AB_2068506
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AB_11183443
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AB_94259
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AB_10000320
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AB_298032
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AB_2156476
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AB_477329
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AB_838238
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AB_2255365
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AB_10747468
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A-10042
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A-10037
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A-21099
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A-11077
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A-21209
Tags
- RRID:AB_10747468
- RRID:AB_476894
- RRID:AB_838238
- RRID:AB_11180183
- RRID:AB_298032
- RRID:AB_2535795
- RRID:AB_2156476
- RRID:AB_2314070
- RRID:AB_141874
- RRID:AB_2535753
- RRID:AB_2255365
- RRID:AB_2068336
- RRID:AB_2068506
- RRID:AB_94259
- RRIDCUR:Missing
- RRID:AB_10000320
- RRID:AB_477329
- RRID:AB_11183443
- RRID:AB_11180865
Annotators
URL
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f1000research.com f1000research.com
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RRID:AB_2277755
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RRID:AB_477579
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RRID:AB_258284
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RRID:AB_258167
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f1000research.com f1000research.com
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RRID:AB_1924743
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RRID:AB_2313567
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f1000research.com f1000research.com
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R&D Systems, Minneapolis, MN, Polyclonal Goat IgG, Catalog #: AB-410-NA
R and D Systems Cat# AB-410-NA RRID:AB_354355
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TNF-alpha neutralizing antibody blocks thermal sensitivity induced by compound 48/80-provoked mast cell degranulation
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www.nature.com www.nature.com
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phycoerythrin-conjugated anti–mouse CD206 (MMR) (1:40 dilution; 141705; BioLegend
BioLegend Cat# 141705, RRID:AB_10896421
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Fatty acid oxidation in macrophage polarization
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www.sciencedirect.com www.sciencedirect.com
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RRID: MGI_2178111
This points to an allele page, not a genotype page.
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Down Syndrome Developmental Brain Transcriptome Reveals Defective Oligodendrocyte Differentiation and Myelination
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link.springer.com link.springer.com
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Peripheral monocytes are functionally altered and invade the CNS in ALS patients
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Keywords
BioLegend Cat# 307616, RRID:AB_493588
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eywords
BD Biosciences Cat# 550787, RRID:AB_393884
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link.springer.com link.springer.com
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Heterogeneous Optimization Framework: Reproducible Preprocessing of Multi-Spectral Clinical MRI for Neuro-Oncology Imaging Research
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www.jove.com www.jove.com
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562128
BD Biosciences Cat# 562128, RRID:AB_10896991
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14-0161
eBioscience Cat# 14-0161-81, RRID:AB_467132
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11-0454
eBioscience Cat# 11-0454-81, RRID:AB_465060
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100307
BioLegend Cat# 100307, RRID:AB_312672
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115519
BioLegend Cat# 115519, RRID:AB_313654
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560596
BD Biosciences Cat# 560596, RRID:AB_1727555
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560602
BD Biosciences Cat# 560602, RRID:AB_1727563
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www.sciencedirect.com www.sciencedirect.com
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Context-Dependent Gait Choice Elicited by EphA4 Mutation in Lbx1 Spinal Interneurons
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elifesciences.org elifesciences.org
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ab55271
Abcam Cat# ab55271, RRID:AB_943793
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sc49996
Santa Cruz Biotechnology Cat# sc-49996, RRID:AB_2123166
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811620
Thermo Fisher Scientific Cat# 811620, RRID:AB_10836379
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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Experimental febrile seizures impair interastrocytic gap junction coupling in juvenile mice
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www.sciencedirect.com www.sciencedirect.com
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NMDA Receptor-Dependent LTD Requires Transient Synaptic Incorporation of Ca2+-Permeable AMPARs Mediated by AKAP150-Anchored PKA and Calcineurin
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jcb.rupress.org jcb.rupress.org
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Loss of OMA1 delays neurodegeneration by preventing stress-induced OPA1 processing in mitochondria
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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304002
BioLegend Cat# 304002, RRID:AB_314390
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343902
BioLegend Cat# 343902, RRID:AB_2223892
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115225146
Jackson ImmunoResearch Labs Cat# 115-225-146, RRID:AB_2307343
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111225144
Jackson ImmunoResearch Labs Cat# 111-225-144, RRID:AB_2338021
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ab292
Abcam Cat# ab292, RRID:AB_303415
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328102
BioLegend Cat# 328102, RRID:AB_940393
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www.sciencedirect.com www.sciencedirect.com
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identical isotype control (no. 400601; BioLegend
BioLegend Cat# 400601, RRID:AB_326545
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labeled (488 nm) secondary antibody (no. SA5-10026; Thermo Scientific
Thermo Fisher Scientific Cat# SA5-10026, RRID:AB_2556606
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www.nature.com www.nature.com
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Netrin-1LacZ/+ (Ntn1Gt(pGT1.8TM)629Wcs) (referred to as Ntn-1LacZ/+)
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α-Axonin-1
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α-LH2
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α-Sox1
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α-Chx10
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α-Tag-1
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α-Robo3
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α-Evx1/2
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Mab-Tag-1
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Mab-Nkx2.2
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Mab-RC2
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Mab-HB9
DSHB Cat# MNR2, RRID:AB_2314625
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Mab-Nestin
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Chicken α-GFP
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α-β-galatosidase
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link.springer.com link.springer.com
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Scalable Brain Atlas
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3dBAR
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CoCoMac
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www.sciencedirect.com www.sciencedirect.com
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Tumor necrosis factor-inducible gene 6 protein: A novel neuroprotective factor against inflammation-induced developmental brain injury
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www.sciencedirect.com www.sciencedirect.com
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127402, Biolegend
BioLegend Cat# 127402, RRID:AB_1089187
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Segregated Foxc2, NFATc1 and connexin expression at normal developing venous valves, and connexin-specific differences in the valve phenotypes of Cx37, Cx43, and Cx47 knockout mice
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www.nature.com www.nature.com
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Sharing self-related information is associated with intrinsic functional connectivity of cortical midline brain regions
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www.sciencedirect.com www.sciencedirect.com
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Psychiatric Risk Gene Transcription Factor 4 Regulates Intrinsic Excitability of Prefrontal Neurons via Repression of SCN10a and KCNQ1
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www.ijcep.com www.ijcep.com
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XBP1s (619502, BioLegend
BioLegend Cat# 619502 RRID:AB_315908
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link.springer.com link.springer.com
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NiftyFit: a Software Package for Multi-parametric Model-Fitting of 4D Magnetic Resonance Imaging Data
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www.sciencedirect.com www.sciencedirect.com
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Pioneering Activity of the C-Terminal Domain of EBF1 Shapes the Chromatin Landscape for B Cell Programming
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www.sciencedirect.com www.sciencedirect.com
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Generation of a Xenopus laevis F1 albino J strain by genome editing and oocyte host-transfer
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journal.frontiersin.org journal.frontiersin.org
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Peripheral injury of pelvic visceral sensory nerves alters GFRα (GDNF family receptor alpha) localization in sensory and autonomic pathways of the sacral spinal cord
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www.sciencedirect.com www.sciencedirect.com
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s-Adenosylmethionine Levels Govern Innate Immunity through Distinct Methylation-Dependent Pathways
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www.sciencedirect.com www.sciencedirect.com
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TRA-1-60Mouse1:200Biolegend, 330,602
BioLegend Cat# 330602 RRID:AB_1186144
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TRA-1-81Mouse1:200Biolegend, 330,702
BioLegend Cat# 330702 RRID:AB_1089240
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βIIItubMouse1:4000Sigma-Aldrich, T8660
Sigma-Aldrich Cat# T8660 RRID:AB_477590
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Ataxin-3Mouse1:1000Millipore, MAB5360
Millipore Cat# MAB5360 RRID:AB_2129339
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GAPDHRabbit1:1000Abcam, Ab9485
Abcam Cat# ab9485 RRID:AB_307275
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SMAMouse1:500Dako, M0851
Dako Cat# M0851 RRID:AB_2223500
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SSEA-4Mouse1:200Biolegend, MC813–70
DSHB Cat# MC-813-70 (SSEA-4), RRID:AB_528477
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SSEA-3Rat1:200Biolegend, MC-631
DSHB Cat# MC-631 (SSEA-3), RRID:AB_528476
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OCT4Goat1:200Santa cruz, sc8628
Santa Cruz Biotechnology Cat# sc-8628 RRID:AB_653551
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NANOGRabbit1:500Perprotech, 500-P236
PeproTech Cat# 500-P236bt-25ug RRID:AB_1268451
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www.sciencedirect.com www.sciencedirect.com
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Segregated Glycine-Glutamate Co-transmission from vGluT3 Amacrine Cells to Contrast-Suppressed and Contrast-Enhanced Retinal Circuits
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strain, Tg[Slc17a8-icre]1Edw; JAX, 018147, Jackson Laboratory; RRID, IMSR_JAX:018147
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strain B6;129S-Gt(ROSA)26Sortm32(CAG-COP4∗H134R/EYFP)Hze/J, Jackson Laboratory; RRID IMSR_JAX, 012569
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