eLife Assessment

This important study demonstrates that nutrient resorption efficiency in the widespread wetland grass Phragmites australis is largely canalized by phylogeographic lineage, ecotype and geographic origin, rather than responding plastically to short-term salt stress. The findings have implications beyond plant ecophysiology because they suggest that predictions of wetland nutrient cycling under increasing salinization should account for the genetic composition of plant populations. The evidence supporting the central conclusions is compelling, based on a well-designed common-garden experiment involving 110 genotypes, paired control and salinity treatments, and convergent metabolomic, ionomic and whole-plant evidence confirming that the treatment imposed substantial physiological stress. The interpretation is nevertheless limited to one growing season and a single, moderate salinity treatment, leaving open whether chronic, more severe or multigenerational exposure might induce plastic or transgenerational responses; further clarification of the relationships among phylogeographic lineage, ecotype and latitude, and a more cautious interpretation of the variance explained by latitude, would strengthen the manuscript.

eLife Assessment

This important study introduces an open-source software package that improves the computational efficiency of whole-brain modelling and facilitates individualised model fitting in large neuroimaging cohorts. The evidence is convincing for the main computational and practical claims, supported by evaluations across multiple optimisation strategies, speed benchmarks, and demonstrations using human neuroimaging data. Its modular design and documentation should make it a resource that is of value to researchers interested in scalable and individualised brain network modelling.

eLife Assessment

This is a valuable study addressing a debated question in brain repair research by testing whether NeuroD1 can convert brain immune cells into nerve cells using a virus-free genetic approach and live imaging. The solid evidence presented here supports that, under the conditions tested, NeuroD1-expressing cells do not become nerve cells and instead retain their original identity; however, some aspects of expression level, injury timing, and cell-type composition would benefit from further clarification. This work will be of interest to neuro-immunologists.

eLife Assessment

This study uses a technically challenging long-term in vivo recordings and computational modeling to investigate whether hawkmoth olfactory receptor neurons show circadian modulation of spontaneous firing. The study provides solid evidence that ORNs have a circadian pattern of spontaneous firing that is Orco-dependent and yet that Orco transcript abundance does express a circadian rhythmicity and that cAMP can modulate all Orco-dependent activity. Together with computational work, the work is valuable in proposing a provocative hypothesis that an Orco-centred post-translational feedback loop generates the circadian rhythm.

eLife Assessment

This fundamental work significantly advances our understanding of how contact-dependent antagonism enables keystone bacteria to establish and maintain their niche over time. The evidence obtained is convincing, supporting most of the conclusions drawn. This work will be of significant interest to the microbiome research community.

eLife Assessment

This study presents a valuable insight into the mechanism of action of With-No-lysine (K) kinases (WNK) in the insulin-dependent signaling in the context of learning and memory. The study uses solid methodological approaches that align with the current standards in the field. The revised manuscript, which includes diverse models ranging from mouse to cell systems assessed by a broad range of complementary techniques, convincingly argues that WNK signaling contributes to neuronal function in insulin-sensitive brain regions such as the hippocampus through its effects on GLUT4 trafficking.

eLife Assessment

This manuscript presents a valuable computational tool for identifying 3-5 gene regulatory network topologies capable of generating oscillatory dynamics. The application of Monte Carlo Tree Search to circuit design is novel and effectively expands the scale at which non-linear behaviours can be explored in silico. The efficiency of the proposed algorithm is convincing, and the work will be of interest to the systems and synthetic biology communities. While the generality of the identified circuit properties is constrained by the simplifying modelling assumptions and parameter choices, the methodological contribution represents a significant advance in the field.

eLife Assessment

This study reports the discovery of a new circuit mechanism for light-avoidance behavior in the marine annelid, Platynereis dumerilii. Using calcium imaging, molecular perturbations, behavioral measurements, and modeling, the authors provide compelling evidence that nitric oxide is released by postsynaptic neurons onto ciliary photoreceptors to prolong and enhance their response to ultraviolet light. The fundamental new role of nitric oxide described in this study may be conserved across animal phyla and thus will be of broad interests to neuroscientists and neuroendocrinologists.

eLife Assessment

This manuscript applies a theoretical analysis to two published datasets on yeast and bacterial evolution to compare different ways of quantifying fitness. It makes an important advance by clarifying how discrepancies can arise by using different approaches and provides recommendations for best practices. Overall, this is an impressive and highly beneficial study that is based on convincing evidence and has the potential of setting standards in this rapidly growing field.

eLife Assessment

The authors ask whether a simple whole-head spectral power analysis of human magnetoencephalography data recorded at rest in a large cohort of adults shows robust effects of age, and their results provide compelling evidence that it does. The relative simplicity of the analysis is a major strength of the paper, and the authors are careful to control for many different confounds - although perhaps highly correlated factors like brain anatomy still pose a slight issue. The paper provides a valuable power analysis framework that should inform researchers across the broader neuroimaging community.

eLife Assessment

This valuable study demonstrates how rhythmic inputs can shape sequential working memory. The study puts forward plausible dynamic mechanisms, but some of the central behavioral effects are small, so the evidence - at present - remains incomplete.

eLife Assessment

This important study provides new insight into how frontostriatal circuits encode elapsed time and exhibit decision-related dynamics during an auditory change-detection task. Analyses of simultaneously recorded neurons from the frontal orienting field (FOF) and anterior dorsal striatum (ADS) provide solid evidence that FOF and ADS show similar dynamics during evidence accumulation, but that FOF shows stronger movement-aligned reorganization near the time of the decision report. However, the mechanistic interpretation would be strengthened by clearer links between the population-level analyses, single-neuron activity, and relevant circuit anatomy. The work will be of broad interest to systems neuroscientists studying timing, decision-making, and frontostriatal dynamics.

eLife Assessment

This important study combines behavioral testing, fiber photometry recordings, and optogenetic manipulations to understand the role of CRH+ neurons in the PVN of the hypothalamus in social and non-social settings, while varying the degree of familiarity. The approaches used and the finding that these neurons respond to various social (and non-social) stimuli are strong; however, the conclusion that the activity of these neurons is driven solely by unfamiliar situations and the lack of dynamic analysis of fiber photometry data leaves the manuscript incomplete. This elegant study will likely be of interest to the field of social neuroscience and, if outstanding issues are addressed, would expand our understanding of the role of the PVN in behavior.

eLife Assessment

This important work provides new insights into the role of lysine acetylation of alpha-synuclein, the protein involved in Parkinson's Disease. The evidence is convincing and the work will be of interest to researchers in the fields of protein biophysics and post-translational modifications.

eLife Assessment

The authors propose the existence of an AQP4-positive tanycyte-associated canal system in the hippocampus based on histological, ultrastructural, immunohistochemical, and RNA-based approaches. There are serious concerns regarding the evidence, and the identification of the tanycyte-related structures can be questioned. At this stage, the evidence for the central claims of the manuscript has to be regarded as inadequate.

eLife Assessment

This work describes a valuable method for monitoring pathogens using an innovative, field-deployable device that attracts animals and collects saliva on filter paper in a non-invasive manner. While the strategy is effective at collecting samples and ensuring their preservation, support for some claims remains incomplete. This study will interest scientists in various fields, ranging from biodiversity, ecology, and conservation to infectious diseases and public health.

eLife Assessment

This study provides an important and biologically plausible account of how human perceptual judgments of heading direction are influenced by a specific pattern of motion in optic flow fields known as retinal curl. By combining psychophysical experiments and neural modeling, the authors demonstrate that what was previously considered an incidental, 'nuisance' signal actually serves as a functional control signal for estimating heading and steering toward a fixated target. The evidence supporting the role of curl signals is convincing and advances our understanding of vision-based navigation at the behavioral level. A particular strength of the work is the direct manipulation of curl within flow fields, demonstrating that it effectively cancels or reverses heading biases. This work provides an invaluable framework for future exploration into the neural mechanisms of steering control based on retinal curl.

eLife Assessment

This manuscript describes a series of studies using four different Go/No Go task variants in combination with fast-scan cyclic voltammetry to determine the role of dopamine release in the ventromedial striatum in action selection, controllability of reward pursuit, effort, and reward approach. The authors conclude that dopamine signals in the ventromedial striatum integrate the invigoration of action initiation with continuous estimation of spatial, but not temporal, proximity to rewards. There is solid support for the conclusions, and the findings are valuable, with theoretical implications for the role of dopamine in reward-driven behavior.

eLife Assessment

In their important manuscript, Gangadharan, Kober and Rice focus on how Stu2/XMAP215-family microtubule polymerases use their TOG domains to catalytically promote microtubule growth, testing whether their mechanism follows an enzyme-like kinetic model similar to that of actin polymerases. The authors integrate measurements including microtubule polymerization rates and TOG-tubulin binding kinetics to convincingly show that Stu2 follows an enzyme-like model where tight tubulin binding enables efficient polymerization, revealing a shared mechanism with actin polymerases despite their evolutionary divergence. This work will be of general interest to the cell biology and biophysics communities.

eLife Assessment

This valuable study explores changes in the Drosophila microbiome in response to environmental temperature over more than ten years. The evidence that temperature leads to diversification of bacterial clades is solid, despite the need for greater clarity in defining and tracking strain competition. The work will interest researchers working with microbiomes, microbial ecology, and evolutionary biology.

eLife Assessment

This manuscript focuses on developing a structural model of how the multidomain ECM protein SVEP1 enables Angiopoietin (ANG) binding to the orphan receptor TIE1, resulting in downstream receptor phosphorylation and signaling. This is an important study, based on solid data. The results will be of interest to scientists working in vascular biology and RTK signaling.

eLife Assessment

This useful study examines whether microsaccade direction primarily indexes shifts rather than the maintenance of covert spatial attention, offering a potentially informative account of inconsistencies in the prior literature. However, the evidence remains incomplete because the key effects are based on relatively sparse microsaccadic events, while concerns about event detection, fixation control, subject-level robustness, and the interpretation of gaze-density analyses remain unresolved. The correlational design and absence of a neutral condition or independent measure of attentional shifting further limit the central claim. The work will be of interest to researchers studying attention, eye movements, and visuomotor mechanisms.

eLife Assessment

The authors describe a cell-specific mechanism by which glutamate transporters regulate the fidelity with which T-stellate cells in the mouse ventral cochlear nucleus relay information from auditory nerve inputs. The study is supported by solid electrophysiological data. It provides valuable insights into how the rapid binding of glutamate to transporters shapes auditory information processing at specific synapses.

eLife Assessment

This work provides a valuable contribution by leveraging simulation-based inference to investigate candidate compensatory mechanisms in neuronal network models and offering new insights into how distinct pathological perturbations may require different interventions. The computational evidence is convincing and has been strengthened by additional reproducibility analyses, although some aspects of inference validation and the biological interpretation of posterior dependencies warrant further investigation. The study establishes a helpful computational framework for exploring disease-specific compensatory mechanisms and will be of broad interest to the computational and systems neuroscience communities.

eLife Assessment

This important study reports a novel phenomenon of maternal growth during pregnancy that is independent of growth hormone (GH), adding a new dimension to maternal biology of reproduction. The evidence is convincing and supported by state-of-the-art methodologies conducted in mice and persuasive observations in humans with hereditary isolated GH deficiency. Revised discussion should focus on possible mechanisms, including the role of IGF2, and on directions for future research.

eLife Assessment

In this valuable study, Zhang et al. investigated EEG neurofeedback as a method to modulate brain activity prior to painful stimulation and examined its effect on pain perception in a well-powered, double-blind study. Results showed that real, but not sham, feedback enabled learning-dependent enhancement of pre-stimulus α oscillations. However, the evidence for a neurofeedback-specific reduction in pain remains incomplete, as the current paradigm cannot distinguish between genuine neurofeedback effects and placebo effects. Nonetheless, this work is likely to be of interest to researchers in the fields of neurofeedback and pain.

eLife Assessment

This important study investigates whether perceived gender is represented in the brain in a category-invariant manner across faces, bodies, and objects, identifying the right middle temporal gyrus (rMTG) as a potential locus. The evidence is incomplete due to major conceptual concerns, weak statistical methods, and unaddressed low-level confounds like stimulus size and motion. This work will be of interest to psychology and social neuroscience researchers in face and person perception literature, provided the authors temper their claims regarding abstract representation.

eLife Assessment

This important study extends a model of cortical normalization (ORGaNICs) to interacting cortical areas and shows that communication through coherence and communication subspaces can arise from a single set of dynamics. The evidence is solid, showing analytically that contrast-dependent gamma dynamics and a low-dimensional inter-areal communication subspace arise from one parameter set, though the comparisons to data remain qualitative and the analytics rest on a linearization that is not checked against numerical simulation. The work will interest neuroscientists and theorists concerned with inter-areal communication, cortical oscillations, and divisive normalization.

eLife Assessment

This valuable descriptive study describes the expression of a developmentally relevant transcription factor in the adult Tribolium brain. The evidence supporting the claims is convincing and based on a very detailed and rigorous analysis of light microscopy data, which, however, lacks single-cell resolution. This neuroanatomical study is of interest to the field of insect neural development and neuroscience.

eLife Assessment

This paper describes a valuable tool for the detection and analysis of dentate spikes, network events in the dentate gyrus that are common yet understudied. This tool could help standardize dentate spike detection and analysis across labs and is therefore likely to be of interest to hippocampal neurophysiologists. However, the strength of evidence for its broad usefulness was viewed as incomplete, due to several identified bugs in the program and insufficient explanations of parameter selection and methods.

eLife Assessment

This study reports important and invaluable findings that advance understanding of how attention is distributed between what we look at directly and what lies outside the center of gaze during active visual search. The evidence supporting the main claims is solid, with a large and rich dataset spanning multiple brain areas, although some aspects of the interpretation would benefit from additional controls and clearer separation of attention from eye-movement planning. The work will be of particular interest to researchers studying attention, visual perception, and eye movements behavior.

eLife Assessment

This valuable study characterizes how antibody responses converge on similar functional solutions despite diverse genetic backgrounds, providing a resource that is of importance in understanding immune responses and informing vaccine research. The evidence is solid, with extensive and well-executed analyses supporting the primary findings, although broader conclusions regarding vaccine design would benefit from more cautious interpretation and fuller discussion of the study's limitations. The work will be of interest to researchers studying antibody responses, viral evolution, and vaccine development.

eLife Assessment

This is an important study reporting a new phenotype for a gene cluster that has previously been associated with the responses of the Gram-negative opportunistic pathogen Pseudomonas aeruginosa to flow fluid. Expression of the froABCD gene cluster is induced by HOCl in vitro and by activated immune cells, which produce these types of reactive chlorine species and the evidence presented by the authors is in many places convincing. Overall, the authors have been responsive to the previous review, although the exact mechanism of fro-induction by HOCl remains unclear. The high cysteine- and methionine content of the anti-sigma factor FroI hints at a direct oxidative modification of this protein during activation of the operon and a corneal infection model shows that fro is upregulated in P. aeruginosa 20 h after infection, but the evidence that HOCl is the causative agent of fro upregulation under these conditions is at present circumstantial. This study is of interest to infection biologists interested in mechanisms of bacterial pathogenicity.

eLife Assessment

This study provides important insights into the neural mechanisms linking sleep and long-term memory consolidation. By combining behavioural, genetic, imaging, and connectomic approaches in Drosophila, it identifies a target neural circuit that will be of broad interest to researchers studying sleep, memory, and neural circuits. The evidence supporting the involvement of the identified circuit in the regulation of sleep and memory is solid and represents a substantial advance in the field. Nevertheless, there is limited evidence to support the mechanistic claim that this circuit directly links sleep and memory consolidation within the available data, and some results should therefore be interpreted with appropriate caution.

eLife Assessment

This important study introduces NoSeMaze, a semi-naturalistic platform for continuous, high-dimensional tracking of social and cognitive behaviors in group-housed mice, and uses it to show that individual social rank is stable across changing social contexts. By integrating automated dominance measures, proactive social behaviors, and reinforcement-learning-based profiles, the authors demonstrate a novel framework for examining how stable individual differences shape social structure. The findings provide compelling evidence that dominance traits are stable across changing social contexts and largely independent of non-social cognitive performance, supporting the view that social rank reflects an intrinsic dimension of individuality however, the broader functional significance of dominance in this paradigm remains somewhat ambiguous, including the extent to which the measured behaviors capture how dominance operates in more naturalistic social settings. This work will be of broad relevance for behavioral neuroscience and social behavior research.

eLife Assessment

This important study provides evidence that locus coeruleus activity is coordinated with heart rate during sleep, confirming previous work in mice and humans, with a possible role for sleep-dependent memory consolidation. The claims are supported by convincing evidence. This work will be of interest to neuroscientists focusing on sleep, memory, and autonomic functions.

eLife Assessment

This important study reveals distinct representations of task-related information in the dendrites and somata of cortical neurons during sensorimotor learning and behavioral adaptation. The evidence is compelling, combining imaging of dendritic and somatic activity during behavior to demonstrate compartment-specific encoding of sensory cues, motor actions, and corrective signals. The work will be of broad interest to neuroscientists studying dendritic computation, motor learning, and the cellular mechanisms underlying adaptive behavior.

eLife Assessment

This study provides a useful analysis of the effects of arginine vasopressin (AVP) on islet cells in pancreatic tissue slices, using sophisticated spatiotemporal calcium recordings to show that AVP affects α and β cells differently depending on glucose concentration. The calcium imaging, analytical approaches, and V1b receptor-targeted peptide ligands are strengths of the work. However, the reviewers were concerned that the proposed mechanistic model is not sufficiently supported by the data. Characterisation of β-cell responses remains incomplete, and potential off-target effects and limited receptor specificity raise alternative explanations, including indirect effects mediated through α cells. The study would have been strengthened by signalling pathway analyses, genetic validation (e.g. β-cell-specific V1bR deletion), or selective V1b receptor silencing. The RNAscope data included in the revision indicate broader expression patterns but do not clearly establish receptor localisation within specific endocrine populations.

eLife Assessment

In this important work, the authors develop methods to forecast epidemic growth from viral sequencing data alone. The evidence for the usefulness of the approach is solid, but some justifications and methodological details are incomplete. This study should be of broad interest to the community interested in viral dynamics and epidemiology.

eLife Assessment

The paper provides a valuable, foundational dataset that will undoubtedly provide substantial value to the cancer research community. The aggregation and harmonization of a broad, rich, multi-omic dataset is convincing and will potentially support further downstream research on GIST, which currently has poor supporting datasets. Support for the accompanying claims is more incomplete, however: the biological demonstration rests on a single gene tested by one approach, several analyses lack sample sizes and multiple-testing correction, the claims made for the LLM assistant are not backed by direct evaluation, and the curated data matrices would ideally be deposited independently of the web.

eLife Assessment

This important study presents the development of a model to quantify the dynamics of stress-induced volatile emissions in plants and identify biologically relevant differences in these responses. The model is based on a convincing methodology and represents a starting point for studies of similar responses in other plants or investigations of induced phenotypes in different biological systems.

eLife Assessment

This important study presents a cell-based screen for small-molecule activators of GCN2, an eIF2α kinase that regulates the Integrated Stress Response under diverse stress conditions. The authors identify a compound as a potent GCN2 activator with GCN1-independent activity under the tested conditions, providing a new pharmacological tool for probing GCN2 regulation. The revised manuscript provides compelling support for the central conclusions through a clearer description of the screening workflow, extended kinetic analyses, and demonstration that the identified compound causes a GCN2-dependent reduction in protein synthesis.

eLife Assessment

This important paper describes the role of the Pre-rRNA in meiotic sex chromosome inactivation in mouse spermatocytes. The cytological analyses of nucleolar components and the chemical inhibition of RNA polymerase I for rDNA transcription provided solid evidence, supporting the authors' conclusions. However, the results were not well described or explained in the text, making the logic difficult to follow. This paper will be of interest to researchers in meiotic chromosome structure and the nucleolus.

eLife Assessment

The authors addressed a significant biological question, namely the role of glutamine metabolism in humoral responses, and they obtained solid conclusions. The strength of this study is that the authors used state-of-the-art transgenic mouse models together with in vitro analysis, thereby providing important insights into the question posed. The manuscript has been further substantiated by adding more appropriate experimental controls and describing more in-depth functionality/physiological relevance.

eLife Assessment

This interesting study adapts machine learning tools to analyze movements of a chromatin locus in living cells in response to serum starvation. The machine learning approach developed is useful, the experiments are well controlled, and the data are solid. The study will benefit from future work testing predictions by perturbation experiments. This work will be of interest to those studying chromosome biology and gene expression patterns.

eLife Assessment

This important study reports insights into how the caspase Dcp-1, best known for cell death, can also promote tissue growth in Drosophila, extending the authors' earlier work by identifying regulatory factors that shape this non-lethal activity. The compelling findings identify a physical and functional interaction between Dcp-1 and Bruce, as well as new Dcp-1-interacting proteins that function in autophagy: Sirt1, Fkbp59, Debcl, Buffy, Atg2, and Atg8a. This work helps broaden the understanding of the non-lethal roles of Dcp-1.

eLife Assessment

The authors describe a new member of the KCNE auxiliary subunits of potassium channels from a lamprey. This new subunit represents an early evolutionary member which confers new properties when expressed along with KCNQ channels. In the revised version of the manuscript, the authors present convincing evidence from several experimental approaches. The contents of this manuscript are important and should be relevant to understanding both the mechanism of modulation of KCNQ channels by KCNE subunits and the evolutionary history of these subunits, which this manuscript now extends to the divergence of early vertebrates.

eLife Assessment

This useful study addresses a timely question about semantic prioritisation in visual working memory, using behavioural manipulations and drift-diffusion modelling. However, the strength of evidence is incomplete for the broader claims about working-memory representations because the main interpretation relies on indirect inferences from non-decision time, which cannot uniquely identify memory access or retrieval.

eLife Assessment

The manuscript by von Velsen et al. offers valuable structural insights into the mitogen-activated protein kinase (MAPK) pathway by providing cryo-EM structures of stabilized MEK1-ERK2 kinase-substrate complexes in inactive, active, and nucleotide-free states, complemented by HDX-MS, SAXS, ITC, crystallography, and molecular dynamics. The work provides solid evidence for the overall architecture of the complex and identifies interaction sites that help explain MAPK pathway specificity. However, some mechanistic conclusions are not yet fully supported, particularly the designation of one state as an active phosphoryl-transfer configuration, the claim that substrate binding releases the MEK1 catalytic machinery, the proposed link to processive phosphorylation, and the extrapolation to disease-associated mutations.

eLife Assessment

The authors use a novel patch-leaving task to reveal a reward-reset strategy when mice choose to leave a depleting resource, and find that accumulated step-like activity in the dorsomedial striatum is correlated with the timing of these decisions. These important behavioral and neural findings are supported by substantial and convincing data. Additional control analyses would strengthen the evidence that these signals are specifically related to timing and patch-leaving decisions, rather than alternative task-related processes.

eLife Assessment

This important study uses longitudinal EEG to chart how neural tracking of syllables and word-level statistical structure develops over the first two years of life in infants at high and low likelihood for autism and links these measures to verbal outcomes at 18-20 months. The strength of evidence is convincing: the prospective longitudinal design, careful data-quality handling, and partial least squares analyses are appropriate and well executed, though some interpretations of the group differences in syllable tracking, along with the possible contributions of multilingual exposure and sleep state during recording, warrant caution. The work will be of interest to developmental cognitive neuroscientists studying language acquisition and early neural markers of neurodevelopmental conditions.

eLife Assessment

In this valuable study, the authors identified a rare population of Nestin-expressing cells within the external granule layer of the early postnatal mouse cerebellum. They demonstrated that these cells are distinct from Sox2+ progenitors and can give rise to medulloblastoma. Collectively, the findings provide convincing evidence that this unique Nestin+ population is susceptible to oncogenic transformation and may underlie the preferential emergence of Sonic hedgehog-driven medulloblastomas.

eLife Assessment

This manuscript presents important new findings showing that the transcription factor and regulator of lipid and glucose metabolism PPARγ is methylated by the enzyme SETD6. The data convincingly demonstrate that methylation of PPARγ by SETD6 regulates its function in controlling transcription of lipid storage and metabolism genes and thereby modulates lipid accumulation in liver cells. This work uncovers a new role for post-translational modulation by lysine methylation in controlling transcription factor activity and lipid metabolism in a relevant physiological context.

eLife Assessment

This study presents valuable data suggesting that ATP-induced modulation of alveolar macrophage (AM) functions is associated with NLRP3 inflammasome activation and enhanced phagocytic capacity. While the in vivo and in vitro data reveal an interesting phenotype, the evidence provided is incomplete and does not fully support the paper's conclusions. Additional investigations would be of value in complementing the data and strengthening the interpretation of the results. This study should be of interest to immunologists and the mucosal immunity community.

eLife Assessment

This manuscript reports valuable results on the role of MDC1 and Treacle in DSB repair in rDNA repeats. It has been previously established that MDC1 is replaced by Treacle as the main adaptor in the nucleolar DNA damage response. This work provides convincing evidence that MDC1 is required for the recruitment of RAD51 and BRCA1 to DSBs in rDNA. The work involves multiple MDC1 knockout models and establishes that RFN8-RNF168 act downstream of MDC1in parallel with the RAP80-ABRAXAS pathway in the recruitment of the HR machinery to nucleolar DSBs.

eLife Assessment

This study offers valuable insights into the role of post-translational modifiers, specifically SUMO2ylation at K81 in p66Shc, and its impact on endothelial function through reactive oxygen species. A series of compelling experiments demonstrated that lysine 81 of p66Shc is the site of SUMO2 conjugation, which is crucial for mitochondrial localization and essential for S36 phosphorylation, leading to specific pathological effects. The combination of cell overexpression and animal studies provides solid data supporting this mechanistic link.

eLife Assessment

This valuable study introduces an innovative experimental design to address a crucial and timely issue in microbial ecology: the potential bias in soil microbial community analyses caused by extracellular DNA degradation. The work contributes to the field by providing convincing evidence that variable extracellular DNA degradation rates impact microbial ecology studies. This research will appeal to microbial ecologists and researchers interested in using molecular techniques to evaluate microbial community structure.

eLife Assessment

This useful study uses creative scalp EEG decoding methods to attempt to demonstrate that two forms of learned associations in a Stroop task are dissociable, despite sharing similar temporal dynamics. However, the evidence supporting the conclusions is incomplete due to concerns with the experimental design and methodology. This paper would be of interest to researchers studying cognitive control and adaptive behavior, if the concerns raised in the reviews can be addressed satisfactorily.

eLife Assessment

This study offers a large-scale resource that maps the transcriptional landscape following combinatorial transcription factor overexpression. The authors propose a modular framework for understanding gene regulatory networks and identify transcription factor cocktails for cellular reprogramming. While the dataset and proposed principles are valuable, the strength of the evidence is incomplete, in part due to the complexity of the computational analyses and limited orthogonal experimental validation. The study will be of interest to the fields of gene regulation and developmental biology.

eLife Assessment

This useful paper describes a software tool, "DrosoMating", which allows automated, high-throughput quantification of 6 common metrics of courtship and mating behaviors in Drosophila melanogaster. The validity of the tool is convincingly shown to perform as well as expert human assessments, across a wide range of conditions. While it is not suitable yet for posed based classification of individual actions, and its utility with respect to new deep learning-based tools such as DeepLabCut, SLEAP have yet to be assessed, the efficient coarse-grained detection of behavioral states in low resolution videos offered by DrosoMating represents a very helpful addition to analytical tools available for assessing courtship behaviour in Drosophila.

eLife Assessment

This study provides an important advance in understanding how disordered proteins interact with cell membranes by identifying the sequence rules that enable aromatic residues to penetrate deeply into the membrane interior. The integration of complementary computational approaches, including molecular simulations, large-scale sequence analysis, and the development of an online prediction server, makes the work potentially impactful for the membrane protein and intrinsically disordered protein communities. The evidence supporting the main conclusions is generally convincing.

eLife Assessment

This is an important study on the role of Slap in restricting Src activity and proliferation of colonic cells in vivo. The authors present solid evidence that an EPHB2-SRC signaling axis stimulates the proliferation of colon precursors and is controlled by the Src-binding protein SLAP, whose loss promotes tumorigenesis.

eLife Assessment

This useful study describes a physical mechanism for the emergence of spiral patterns in the outer epithelial layer of the mammalian cornea independent of pre-patterning or guidance cues, using an agent-based model of self-propelled particles with alignment. The well constructed model show that spiral patterns can emerge from the interaction between the limbus position, cell division, extrusion, and collective cell migration. While the conclusions are solid, some significant questions related to the importance of topological defect remain, and the comparison between the model and data are so far mostly qualitative.

eLife Assessment

This important study contributes to our understanding of how epithelial cells establish polarity by identifying a hierarchy in which Par3 acts upstream of centrosome positioning and apical membrane initiation. The evidence supporting the main conclusions is convincing, and the authors addressed the unresolved questions about microtubule organization and the need for clearer integration of quantitative and conceptual points raised in review. The work will be of interest to cell and developmental biologists.

eLife Assessment

The authors show that innate defensive behavior in mice is shaped by threat intensity, reward value, and social hierarchy, highlighting how value and social context influence instinctive decisions. The authors provide a valuable characterization of escape behavior which approximates naturalistic conditions. Despite minor methodological limitations, the work provides a solid foundation for future investigation of how reward and social context interact to influence behavior.

eLife Assessment

This important study addresses a discrepancy between population-level growth laws and single-cell correlations. It shows, for flagellar and synthetic genes in E. coli, that while gene expression of certain genes reduces population-average growth, expression levels positively correlate with growth at the single-cell level. The measurements are convincing, and the proposed mechanism - inheritance of growth factors such as ribosomes during asymmetric division - is consistent with the data.

eLife Assessment

This fundamental study demonstrates that polarized second-harmonic generation microscopy can be used to probe the ON/OFF states of myosin in both permeabilized and intact muscle, making this key measurement accessible to a greater number of labs. This has the potential to help with the study of disease-causing mutations and our understanding of drug function. The methodology is well defined, and the results are convincing; however, there are some limitations to the interpretation of the data.

eLife Assessment

This useful study uses creative scalp EEG decoding methods to demonstrate that two forms of learned associations in a Stroop task are dissociable, despite sharing similar temporal dynamics. The evidence supporting the conclusions is solid, although it could be further strengthened with a modified experimental design. This paper would be of interest to researchers studying cognitive control and adaptive behavior.

eLife Assessment

This work of fundamental significance introduces a novel statistical model of spiking activity that incorporates continuous-time gain modulation. The authors provide exceptional evidence that the model outperforms earlier approaches and alternative candidates in capturing spiking responses across multiple visual areas in the macaque. Beyond its methodological contribution, the study offers new insights into how stimulus-driven variability and internally generated gain fluctuations evolve over time and between brain areas. The framework is likely to find broad application beyond the datasets examined here.

eLife Assessment

This valuable study uses repeated experience sampling to track the relationship between depressive symptoms and perceptual confidence. The central claim that depression impairs the integration of momentary confidence into a global sense of confidence is supported by solid, robust evidence. However, the largely subclinical, highly compliant sample with limited mood variability restricts the generalisability of the conclusions. This study will be of interest to researchers studying mood disorders and metacognition, as it suggests more ecologically valid ways to investigate how mental health influences metacognition.

eLife Assessment

This valuable study presents evidence that the human brain encodes perceptual absence and numerical absence through distinct neural codes, while confirming that symbolic and non-symbolic forms of zero share a common representation. The evidence supporting this dissociation is convincing, drawing on neural decoding techniques and Bayesian analyses, although some concerns remain about task design and decoding method, which could partly explain the lack of shared representation. The work will be of interest to neuroscientists and psychologists studying numerical cognition and the boundary between perception and higher-level cognition.

eLife Assessment

This valuable study presents a comparative dataset on crab locomotion to investigate the evolution of sideways walking. The evidence supporting the authors' claims is convincing. This work will be of broad interest to researchers in animal locomotion and evolutionary biology.

eLife Assessment

This important study investigates how the size of an LLM may influence its ability to model the human neural response to language recorded by ECoG. Overall, solid evidence is provided that larger language models can better predict the human ECoG response. This study will be of interest to both neuroscientists and psychologists who work on language comprehension and computer scientists working on LLMs.

eLife Assessment

This study demonstrates that toll-like receptor 4 in non-myeloid cells is a central regulator of leptomeningeal inflammation in the context of neonatal E. coli meningitis. The data, derived from conditional gene deletions in mice, and from cultured endothelial cells, are convincing and support the authors' conclusions. This work is important because it advances our understanding of the host cellular and molecular factors underlying meningitis pathogenesis, especially in the context of the vascular barrier breakdown.

eLife Assessment

This study employs state-of-the-art quantitative imaging and genomics approaches to address a fundamental question regarding the establishment of Polycomb domains during Drosophila embryogenesis. The authors identify the maternal-to-zygotic transition, rather than earlier developmental stages, as the critical window for Polycomb domain establishment, providing significant clarification of the timing of this process and they further investigate the roles of Zelda and GAGA factor, demonstrating that Zelda, but not GAGA factor, contributes to Polycomb domain establishment. Overall, the conclusions are well supported by the experimental evidence presented. These compelling findings advance our understanding of how Polycomb domains are established during early embryogenesis and have broad implications for chromatin regulation and developmental biology.

eLife Assessment

The study presents valuable findings on early behavioral phenotypes that arise in an ADHD-associated adgrl3.1 mutant zebrafish, using a new behavioral approach with a closed-loop OMR assay. The evidence supporting the claims of the authors is solid; however, the validation of the method and analysis is incomplete and would benefit from more rigorous approaches and validation practices. This work will be of broad interest to developmental biologists and behavioral neuroscientists.

eLife Assessment

This valuable cross-sectional longitudinal study leverages high-definition transcranial direct current stimulation to the left dorsolateral prefrontal cortex to examine its effect on procrastination behavior over an extended time span. The cross-sectional longitudinal study a testing of competing models provided solid evidence for how stimulating DLPFC impacts reveal-world procrastination behavior. Whether these results generalize to a larger population will be a significant future direction. This work will be of interest to those interested in cortical function, procrastination, and related states.

eLife Assessment

This study presents a valuable human organoid platform for investigating neuron-immune interactions in Alzheimer's disease and modeling the interplay between innate and adaptive immunity in the context of amyloid pathology. The system has the potential to advance the field by enabling the study of human-specific neuroimmune interactions that are difficult to recapitulate in rodent models; however, the evidence supporting several central conclusions remains incomplete. Key claims, including the causal role of microglia-derived chemokines in T cell recruitment and the existence of a neuroinflammatory feedback loop, rely primarily on correlative observations and lack the mechanistic experiments necessary to establish causality; in addition, a major confounding factor, the non-autologous nature of the cellular components, is not adequately addressed. Despite these limitations, the study will be of considerable interest to researchers in neuroimmunology and Alzheimer's disease.

eLife Assessment

This valuable study presents a comparative analysis of the transcriptomic features underlying C. elegans longevity, providing insights into how different changes in gene expression can promote longevity. The authors present solid evidence with analysis and selected functional validation showing that some long-lived animals share common changes while others appear to use opposing strategies. The datasets and analyses contained within and the user-friendly website developed will be of interest to researchers interested in complicated transcriptomic analyses and/or the biology of aging.

[Editors' note: this paper was reviewed by Review Commons.]

eLife Assessment

This important study uses an elegant visual-anagram approach to test whether perceived animacy shapes visual working memory and guides visual attention while tightly controlling for lower- and mid-level image properties. The evidence is convincing and provides a rigorous demonstration that perceived animacy influences visual cognition beyond the contribution of its typical visual correlates. The findings will be of broad interest to researchers studying high-level vision, attention, and working memory.

eLife Assessment

This study provides important insights into the neural mechanisms linking sleep and long-term memory consolidation. By combining behavioural, genetic, imaging, and connectomic approaches in Drosophila, it identifies a target neural circuit that will be of broad interest to researchers studying sleep, memory, and neural circuits. The evidence supporting the involvement of the identified circuit in the regulation of sleep and memory is solid and represents a substantial advance in the field. Nevertheless, there is limited evidence to support the mechanistic claim that this circuit directly links sleep and memory consolidation within the available data, and some results should therefore be interpreted with appropriate caution.

eLife Assessment

This important work examines the effects of gaze on valuation signals in the human brain as participants choose between bundles of sequentially presented items food items. The paper provides convincing analyses of how gaze affects participants choice behaviour and how this varies across time. The work will be of interest to neuroscientists working on attention and decision-making.

eLife Assessment

This important study reports the development of the first tankyrase degrader and demonstrates its enhanced ability to inhibit β-catenin signaling compared to conventional tankyrase inhibitors. The evidence supporting the conclusions is comprehensive and convincing, based on rigorous biochemical and cellular analyses. The findings will be of broad interest to researchers studying Wnt signaling, protein degradation, and cancer biology.

eLife Assessment

This revised paper provides solid evidence for HGF-induced trafficking of the HGF receptor, MET, together with metalloprotease MT1-MMP into invadopodia and the role of this trafficking in triple-negative breast cancer (TNBC) cell invasion in vitro. The evidence could be improved with additional experimental controls and analysis, but the findings will be valuable for cancer cell biologists investigating TNBC.

eLife Assessment

This work establishes a valuable theoretical finding about how the spike timing dependence of inhibitory plasticity shapes recurrent network connectivity. The combination of theoretical analysis and simulations provides convincing evidence that effective inhibitory connectivity forms a so-called Mexican-hat profile when multiple inhibitory neuron types follow distinct learning rules. These mechanisms are thought to be implicated in the contextual modulation of neuronal responses to stimuli.

eLife Assessment

This set of studies provides important knowledge for the role of zona incerta neurons in motivation and food-seeking in mice. The evidence supporting the findings is convincing, with the use of multiple approaches and nice behavioral procedures to provide converging lines of evidence. Additional analyses and data from the current studies would further strengthen the evidence. This work will be of interest to those interested in motivation and its brain substrates.

eLife Assessment

This valuable paper reports on a measure of flexible brain state engagement, derived from fMRI, as a predictor of cognitive control. One strength of the study is the use of external datasets for validation and replication. The results are solid, although some may benefit from further explanation.

eLife Assessment

This valuable study aimed to explore whether sensory representations in the cortex reorganize on the same timescale over which behavioral changes first emerge. Convincing evidence is presented to show that reward-dependent plasticity takes place in the mouse barrel cortex within a single recording session as mice learn a whisker detection task. However, the evidence supporting the authors' proposal that this rapid reorganization may involve spontaneous reactivation of neurons that gain stimulus responsiveness during training is incomplete. The work will be of interest to systems neuroscientists studying cortical circuits and learning.

eLife Assessment

This valuable study describes a simple and robust approach for estimating information-limiting noise by splitting neural populations and comparing estimator values. The authors report more accurate and robust results compared to previous methods. The evidence for the robustness of the method is currently incomplete; some concerns regarding bias need to be resolved, and additional tests need to be provided on how the number of trials and neurons affect performance.

eLife Assessment

This valuable study establishes a novel genetic model for chronic, in vivo visualization of protein engulfment in brain macrophages from the naturally short-lived African turquoise killifish. The solid data presented here show that brain phagocytes exhibit transcriptional features resembling mammalian border associated macrophages and monocyte derived macrophages rather than classical microglia and that their engulfment capacity declines with age, providing a resource for future studies on brain immune cells in teleosts. This research will interest a broad audience across developmental biology, genetics, neuroimmunology, aging research, and evolutionary biology.

[Editors' note: this paper was reviewed by Review Commons.]

Editors Assessment:

The paper presents high-quality reference genome assemblies for two closely related widow spider species, the Australian redback (Latrodectus hasselti) and the New Zealand endemic katipō (L. katipo), providing an important genomic resource for studies of venom evolution, adaptation, and conservation biology. Rather than simply reporting assembly statistics, the authors compare the genomic architecture of the two species, showing that both genomes are highly complete (BUSCO scores >94%) and share similar repeat content, while differing in overall genome size, scaffold continuity, and predicted gene numbers. The chromosome-level assembly achieved for L. katipo enables more detailed comparative analyses than previously possible, whereas the more fragmented L. hasselti assembly still captures a highly complete gene repertoire. Ortholog analyses reveal substantial conservation between the species but also indicate lineage-specific differences, with evidence suggesting either gene duplication in L. hasselti or gene loss in L. katipo, providing insight into their divergent evolutionary histories despite their close relationship and contrasting ecological distributions. Beyond generating sequence data, the study establishes foundational genomic resources that will facilitate future investigations into venom gene evolution, population genomics, species divergence, and the conservation of these ecologically and medically significant spiders.

This evaluation refers to version 1 of the preprint

Editors Assessment:

This Data Release presents a multilingual dataset collected from a survey of participants and community members at the 2025 DBCLS BioHackathon, with the goal of understanding how AIis being used in bioinformatics and related scientific fields. The survey, available in English, Japanese, and Thai, gathered responses from 105 participants about AI usage frequency, applications, challenges, institutional support, satisfaction, concerns, and demographic information. The released dataset includes anonymized raw responses, a cleaned English-language version for quantitative analysis, the original questionnaire, a data dictionary, and a translation lookup table to support reproducible research. To protect participant privacy, the authors carefully removed personally identifiable information. This openly available resource provides researchers with valuable data for studying AI adoption, evaluating policy and institutional support, and developing methods for analyzing survey data related to AI use in scientific research. Overall, this work contributes a well-documented, reusable dataset that can help inform future research on the evolving role of artificial intelligence in genomics, bioinformatics, software development, and the broader scientific community.

This evaluation refers to version 1 of the preprint

eLife Assessment

This important study builds on previous work from the same authors to present a conceptually distinct workflow for cryo-EM reconstruction that uses 2D template matching to enable high-resolution structure determination of small (sub-50 kDa) protein targets. The paper provides convincing evidence that the density for small-molecule ligands bound to such targets can be reconstructed without these ligands being present in the template, and it provides an insightful quantification of the level of model bias that remains in the resulting reconstructions. The convenient visualisation of small molecules bound to protein targets of a known structure will be relevant for the pharmaceutical industry.

eLife Assessment

This study demonstrates a critical role of the glycolipid membrane protein insertase (MPIase) in the twin-arginine translocation (Tat) pathway, a protein translocation system that is conserved across all domains of life. The successful reconstitution of the bacterial Tat system in both bacteria-derived and artificial liposomes provides solid experimental evidence that MPIase has a broader role in membrane protein translocation than previously recognized. By revealing the essential function of a nonproteinaceous membrane component in catalyzing a core cellular process, this work offers fundamental insights into the molecular mechanisms of protein translocation.

eLife Assessment

The authors provide convincing evidence that, during early mouse embryogenesis, distal visceral endoderm cells migrate in a coordinated, intermittent start-and-stop manner along an axis that correlates with the asymmetric morphology of the ectoplacental cone. This fundamental finding is supported by high-quality live imaging and quantitative image analysis, while computational modelling suggests that the observed intermittent behavior may be explained by the movement of a cohesive cell group through a viscoelastic tissue, rather than by fluctuations in DVE migration velocity itself.

eLife Assessment

This valuable study provides fMRI evidence for a hierarchical representation of sequence, arranged along the anterior-posterior axis of the entorhinal cortex, as well as evidence from human single-unit recordings for sequence position coding in the hippocampus and entorhinal cortex. Weaknesses include tenuous links between the single-unit and fMRI datasets, incomplete evidence for some claims, lack of discussion of relevant hippocampal literature, and potential over-interpretation of the findings in relation to rodent grid coding. This work will be of interest to researchers studying memory, sequence representations, and spatial coding in the medial temporal lobe.

eLife Assessment

This study provides valuable evidence that glycogen phosphorylase is unlikely to represent an effective insecticidal target in Plutella xylostella and that diflubenzuron does not directly inhibit this enzyme. The combination of biochemical, molecular and physiological approaches provides convincing data to support these conclusions, although the proposed metabolic compensation mechanism is supported primarily by indirect evidence and would benefit from direct demonstration.

eLife Assessment

This important study provides convincing evidence that envelope-carrying Ty3/gypsy retrotransposons (errantiviruses) are ancient and widespread across nearly all major animal phyla, with distribution in many lineages that are consistent with recent or ongoing genomic expansion. Using comprehensive phylogenetic and AlphaFold2-based structural analyses, together with new host-taxonomy concordance tests, the authors show that these elements independently acquired membrane fusion proteins early in metazoan evolution, likely predating the bilaterian-non-bilaterian split. The work offers significant insights into the deep evolutionary roots of retroelement-envelope associations and the origins of retroviruses.

eLife Assessment

In this important study, the authors have performed a zebrafish drug screen to identify suppressors of atherogenic lipoproteins. They utilize a well-established LipoGlo assay to find molecules that modulate these lipoproteins, identifying 49 potential hits and they perform validation experiments, including studies linking enoxolone to its likely inhibitory effect on a specific transcription factor, HNF4alpha. Overall, the results are convincing and robust, and will open up new areas of exploration for those investigators interested in in vivo lipid biology.

eLife Assessment

This study provides important insights into how researchers can use perceptual metamers to formally explore the limits of visual representations at different processing stages. The framework is compelling and the data support the claims.

eLife Assessment

This is an important study establishing the mechanistic principles how NUP98-KDM5A phase separates together with H3K4me3 chromatin in leukemia. Methods are sound and results are convincing, providing a framework to understand gene expression changes in leukemia patients.

eLife Assessment

In this important study, the authors describe the mechanisms by which CDK4/6 overexpression mediates resistance to Osimertinib in EGFR mutant lung cancer models. Their data show that CD4/6 overexpressing cells had increased replicative stress and genomic instability. The evidence is solid, but inclusion of some additional experiments would make this stronger.

eLife Assessment

This study presents a potentially important structure-interaction model describing recognition of polymyxin antibiotics by the human transporter hPepT2 and applies these insights to guide the rational design of potent polymyxin B analogues with reduced nephrotoxicity. The conclusions are supported by compelling evidence, integrating molecular dynamics simulations, transporter mutagenesis, uptake assays, protein expression analyses, antibacterial testing, and mouse nephrotoxicity studies, although some mechanistic interpretations remain limited by altered transporter expression and the absence of direct structural validation.

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possible evidence for topic/subtopic

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eLife Assessment

This valuable study provides solid evidence that N6 methylation of A74 by METTL3 is required for efficient translation directed by the SARS-CoV-2 5′UTR in uninfected cells, likely by limiting access of protein factors to the 5′UTR that are necessary for efficient translation. These findings advance our understanding of the role of RNA modification in coronavirus replication and m6A-mediated regulation of gene expression more broadly, while further supporting METTL3 as a potential anticoronaviral therapeutic target. However, the evidence that m6A acts by destabilizing the third stem-loop (SL3) of the 5′UTR remains incomplete. The impact of the study would be strengthened by biochemical analyses directly assessing structural changes in the 5′UTR induced by A74 methylation.

Most African Americans were living in the south as slaves in what is the U.S. now, around the late 1700's slaves could not learn to read or write because of harsh laws. Most of the African American literary traditions became oral and not written around that time. Their literature started to get past down to many people, and generations using the oral tradition.

eLife assessment

In this manuscript, Rademacher and colleagues examined the effect of a chemogenetic approach on the integrity of the dopamine system in mice with chronically stimulating dopamine neurons. These findings are important: (1) This approach led to an axon-first degeneration over a time course (2–4 weeks) that is suitable for experimental investigation; (2) The finding that direct excitation of dopaminergic neurons causes differential degeneration sheds light on dopaminergic neuron selective vulnerability mechanisms. Overall, the strength of the evidence is solid, but the behavior experiments that do not include a CNO control provide incomplete support for the findings.

eLife Assessment

This study identifies apoptotic retinal ganglion cells as a potential source of ATP-mediated activation of PANX1 channels that initiates developmental retinal Ca²⁺ waves and coordinates microglial activation and vascular outgrowth during postnatal maturation. The work is important because it proposes an integrative framework linking programmed cell death, spontaneous neural activity, immune responses, and angiogenesis into a self-regulating developmental loop. Although the mechanistic conclusions would benefit from complementary genetic validation, the study provides a convincing foundation for future investigations into the coordination of neural circuit development and tissue remodeling.

eLife Assessment

This convincing contribution addresses a question of practical importance: when collecting tilt-series data, what is the optimal angular step size between successive tilt images? The work provides valuable practical insights into cryo-ET data acquisition by demonstrating that balancing two competing demands - sufficient dose per individual tilt image and fine angular sampling - is essential to achieve high-quality tomographic reconstructions. They demonstrate that tilt-series acquired with finer increments (1-3 degrees) yield superior alignment accuracy and improved template-matching performance.

eLife Assessment

This is a valuable study on the metabolic adaptations upon succinate dehydrogenase loss in cancer cells. If confirmed, this study will offer some therapeutic vulnerabilities in treating SDH-deficient cancer. However, the evidence supporting the authors' claim is incomplete and would benefit from additional experimental evidence. This study will be of broad interest for cancer biologists focusing on metabolism.

eLife Assessment

This valuable study documents, for the first time, the degree of preference for contralateral versus ipsilateral forelimb movements in the motor cortex of mice, revealing subtly distinct profiles across cortical areas, with the orofacial region showing comparatively little limb selectivity relative to the forelimb motor areas. The experiments and analyses are, in general, solid and well-designed, and the data support the paper's conclusions.

eLife Assessment

This manuscript employs cryo-EM, mutational analysis, and biochemical assays to explore the molecular basis by which glutamine promotes filamentation and regulates the activity of human glutamine synthetase (hGS) by stabilizing interactions between hGS decamers. The combined structural and biochemical data supporting the proposed mechanism are solid, although the evidence for a higher-order filamentous architecture and the precise assignment of the interface density would benefit from additional support. This work will be of particular interest and useful to groups interested in understanding the molecular basis of nutrient sensing, cellular metabolism, and structural regulation of enzyme activity.

eLife Assessment

This work presents important findings on quantifying gene coexpression from spatial omics. These quantification methods have been applied to gastruloid to describe how genes are spatialised. The description of the quantifying tools is characterized by exceptional evidence after a thorough revision.

eLife Assessment

This multimodal neuroimaging study leverages fMRI, PET, and deep learning to predict memory performance. The authors introduce the brain-cognition gap to link these different imaging modalities to cognition and evaluate their results in two independent cohorts. The results are solid and provide an important contribution to the literature and will be of interest to neuroscientists working at the interface of cognition, neuroimaging.

eLife Assessment

This study explores how complement protein C3 and its signalling may modulate immune training in alveolar macrophages. The findings are an important contribution to the field of trained immunity. The findings are convincingly supported by in vivo and ex vivo experiments, encompassing both pharmacological and genetic-based approaches.