3 Matching Annotations
- Sep 2024
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www-nature-com.ezproxy.rice.edu www-nature-com.ezproxy.rice.edu
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We recommend that these methods replace OTU-based approaches for all applications, except when it is necessary to combine sequence data that were generated using different technologies (that is, Illumina sequencing and 454 pyrosequencing) or with different primer sets, when mapping to a common reference database of full-length sequences is often still needed
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- Jan 2024
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onlinelibrary.wiley.com onlinelibrary.wiley.com
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generally derives from variations in filtering out spurious and low-abundant sequences (e.g. Edgar, 2017; Prodan et al., 2020).
DADA2 like ASV vs OTU?
Applying different workflows on the same data will always demonstrate a certain level of variation among pipelines. These variations are usually most obvious in terms of the reported number of features.
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- Dec 2021
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fiererlab.org fiererlab.org
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If your data is high quality, you want improved taxonomic resolution, and you are not concerned about the intra-genomic heterogeneity in the targeted marker genes, an ESV-based approach could be advantageous. Otherwise, a more standard OTU-based approach might be your best bet.
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