82 Matching Annotations
  1. Dec 2020
  2. hdsr.mitpress.mit.edu hdsr.mitpress.mit.edu
    Issue 2.4 · Harvard Data Science Review
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    hdsr.mitpress.mit.edu/volume2issue4
  3. Sep 2020
  4. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Reproducibility and the future of MRI research
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    onlinelibrary.wiley.com/doi/10.1002/mrm.27939
  5. www.biorxiv.org www.biorxiv.org
    Towards Reproducible Brain-Wide Association Studies
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    biorxiv.org/content/10.1101/2020.08.21.257758v1
  6. psycnet.apa.org psycnet.apa.org
    Using implementation science to close the gap between the optimal and typical practice of quantitative methods in clinical science. - PsycNET
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    psycnet.apa.org/record/2019-43757-009
  7. Jul 2020
  8. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. - PubMed - NCBI
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    pubmed.ncbi.nlm.nih.gov/26658930
  9. Feb 2020
  10. digitalscience.figshare.com digitalscience.figshare.com
    The State of Open Data Report 2019
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    digitalscience.figshare.com/articles/The_State_of_Open_Data_Report_2019/9980783
  11. Nov 2019
  12. www.frontiersin.org www.frontiersin.org
    Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks
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    frontiersin.org/articles/10.3389/fninf.2019.00067/full
  13. www.nature.com www.nature.com
    Make code accessible with these cloud services
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    nature.com/articles/d41586-019-03366-x
  14. Oct 2019
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reproducibility vs. Replicability: A Brief History of a Confused Terminology
    1
    1. dnkennedy 25 Oct 2019
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    ncbi.nlm.nih.gov/pmc/articles/PMC5778115/
  16. www.vice.com www.vice.com
    A Code Glitch May Have Caused Errors In More Than 100 Published Studies
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    vice.com/en_us/article/zmjwda/a-code-glitch-may-have-caused-errors-in-more-than-100-published-studies
  17. Sep 2019
  18. www.nature.com www.nature.com
    A journal club to fix science
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    1. dnkennedy 24 Sep 2019
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    nature.com/articles/d41586-019-02842-8
  19. Jul 2019
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Controversy in statistical analysis of functional magnetic resonance imaging data
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    1. dnkennedy 30 Jul 2019
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    ncbi.nlm.nih.gov/pmc/articles/PMC5410776/
  21. peerj.com peerj.com
    Towards computational reproducibility: researcher perspectives on the use and sharing of software
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    peerj.com/articles/cs-163/
  22. Jun 2019
  23. ruben.verborgh.org ruben.verborgh.org
    The Semantic Web identity crisis: in search of the trivialities that never were
    1
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    ruben.verborgh.org/articles/the-semantic-web-identity-crisis/
  24. May 2019
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services
    1
    1. dnkennedy 28 May 2019
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    ncbi.nlm.nih.gov/pmc/articles/PMC6533280/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Editorial: [Collaborative Efforts for Understanding the Human Brain]
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    1. dnkennedy 10 May 2019
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    ncbi.nlm.nih.gov/pmc/articles/PMC6549773/
  27. www.nature.com www.nature.com
    It’s time to talk about ditching statistical significance
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    nature.com/articles/d41586-019-00874-8
  28. www.nap.edu www.nap.edu
    Reproducibility and Replicability in Science
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    nap.edu/catalog/25303/reproducibility-and-replicability-in-science
  29. Oct 2018
  30. fcon_1000.projects.nitrc.org fcon_1000.projects.nitrc.org
    INDI PRIME-DE
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    fcon_1000.projects.nitrc.org/indi/indiPRIME.html
  31. Sep 2018
  32. www.humanbrainmapping.org www.humanbrainmapping.org
    Reproducibility_Supplement.pdf
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    humanbrainmapping.org/files/2016/ED/Course Materials/Reproducibility_Supplement.pdf
  33. Aug 2018
  34. www.tandfonline.com www.tandfonline.com
    All of This Has Happened Before. All of This Will Happen Again: Data Science
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    tandfonline.com/doi/full/10.1080/10618600.2017.1385474
  35. May 2018
  36. www.nature.com www.nature.com
    Before reproducibility must come preproducibility
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    1. dnkennedy 30 May 2018
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    nature.com/articles/d41586-018-05256-0
  37. Apr 2018
  38. journals.plos.org journals.plos.org
    Regional analysis of volumes and reproducibilities of automatic and manual hippocampal segmentations
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    1. dnkennedy 26 Apr 2018
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    journals.plos.org/plosone/article
  39. blogs.scientificamerican.com blogs.scientificamerican.com
    The "Slow Science" Movement Must Be Crushed!
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    blogs.scientificamerican.com/cross-check/the-slow-science-movement-must-be-crushed/
  40. www.nas.org www.nas.org
    National Association of Scholars
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    1. dnkennedy 23 Apr 2018
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    nas.org/projects/irreproducibility_report
  41. www.biorxiv.org www.biorxiv.org
    Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers
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    biorxiv.org/content/early/2018/02/18/266627
  42. www.pnas.org www.pnas.org
    The preregistration revolution
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    1. dnkennedy 05 Apr 2018
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    pnas.org/doi/10.1073/pnas.1708274114
  43. www.journals.elsevier.com www.journals.elsevier.com
    Cortex
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    journals.elsevier.com/cortex/news/registered-reports-a-new-article-format-from-cortex
  44. Mar 2018
  45. figshare.com figshare.com
    Whitepaper: Practical challenges for researchers in data sharing
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    figshare.com/articles/Whitepaper_Practical_challenges_for_researchers_in_data_sharing/5975011
  46. mniopenresearch.org mniopenresearch.org
    From data sharing to data publishing
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    mniopenresearch.org/articles/2-1/v1
  47. journals.sagepub.com journals.sagepub.com
    Practical Tips for Ethical Data Sharing
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    journals.sagepub.com/doi/pdf/10.1177/2515245917747656
  48. www.psychologicalscience.org www.psychologicalscience.org
    Preregistration Becoming the Norm in Psychological Science
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    psychologicalscience.org/observer/preregistration-becoming-the-norm-in-psychological-science
  49. www.nature.com www.nature.com
    A large, open source dataset of stroke anatomical brain images and manual lesion segmentations
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    nature.com/articles/sdata201811
  50. www.nature.com www.nature.com
    Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses
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    nature.com/articles/sdata201823
  51. www.nature.com www.nature.com
    High-quality science requires high-quality open data infrastructure
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    nature.com/articles/sdata201827
  52. Feb 2018
  53. blogs.plos.org blogs.plos.org
    Open science: Sharing is caring, but is privacy theft? by David Mehler and Kevin Weiner | PLOS Neuroscience Community
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    blogs.plos.org/neuro/
  54. academic.oup.com academic.oup.com
    Science in the cloud (SIC): A use case in MRI connectomics
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    academic.oup.com/gigascience/article/6/5/1/3062833
  55. elifesciences.org elifesciences.org
    eLife latest: Now add notes and comments as you read
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    1. dnkennedy 01 Feb 2018

      Way to go, eLife!

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    elifesciences.org/inside-elife/3afaf00a/elife-latest-now-add-notes-and-comments-as-you-read
  56. Jan 2018
  57. www.nature.com www.nature.com
    Robust research needs many lines of evidence
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    1. dnkennedy 29 Jan 2018
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    nature.com/articles/d41586-018-01023-3
  58. www.cambridge.org www.cambridge.org
    MAKING REPLICATION MAINSTREAM
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    cambridge.org/core/journals/behavioral-and-brain-sciences/article/making-replication-mainstream/2E3D8805BF34927A76B963C7BBE36AC7
  59. www.humanbrainproject.eu www.humanbrainproject.eu
    World’s Brain Initiatives Move Forward Together - News
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    humanbrainproject.eu/en/follow-hbp/news/worlds-brain-initiatives-move-forward-together/
  60. Nov 2017
  61. www.frontiersin.org www.frontiersin.org
    Running Neuroimaging Applications on Amazon Web Services: How, When, and at What Cost?
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    frontiersin.org/articles/10.3389/fninf.2017.00063/full
  62. Oct 2017
  63. faseb.org faseb.org
    FASEB > Science Policy, Advocacy & Communications > Science Policy & Research Issues > Shared Research Resources > Maximizing Shared Research Resources Report
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    faseb.org/Science-Policy--Advocacy-and-Communications/Science-Policy-and-Research-Issues/Shared-Research-Resources/Maximizing-Shared-Research-Resources-Report.aspx
  64. stolkarjen.github.io stolkarjen.github.io
    Ten simple rules for structuring papers
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    stolkarjen.github.io/interacting-minds/readings/Mensh17.pdf
  65. Sep 2017
  66. elifesciences.org elifesciences.org
    eLife supports development of open technology stack for publishing reproducible manuscripts online
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    elifesciences.org/for-the-press/e6038800/elife-supports-development-of-open-technology-stack-for-publishing-reproducible-manuscripts-online
  67. blogs.lse.ac.uk blogs.lse.ac.uk
    Scholarly communications shouldn’t just be open, but non-profit too
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    blogs.lse.ac.uk/impactofsocialsciences/2017/08/15/scholarly-communications-shouldnt-just-be-open-but-non-profit-too/
  68. Aug 2017
  69. journal.frontiersin.org journal.frontiersin.org
    Advances in Studying Brain Morphology: The Benefits of Open-Access Data
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    journal.frontiersin.org/article/10.3389/fnhum.2017.00405/full
  70. peerj.com peerj.com
    Data reuse and the open data citation advantage
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    peerj.com/articles/175/
  71. journals.plos.org journals.plos.org
    “Positive” Results Increase Down the Hierarchy of the Sciences
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    journals.plos.org/plosone/article
  72. Jun 2017
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Experiment Factory: Standardizing Behavioral Experiments
    1
    1. dnkennedy 15 Jun 2017
      The Experiment Factory: Standardizing Behavioral Experiments
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    ncbi.nlm.nih.gov/pmc/articles/PMC4844768/
  74. www.sjscience.org www.sjscience.org
    Untitled document
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    1. dnkennedy 14 Jun 2017
      The Self-Journals of Science
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    sjscience.org/
  75. www.nature.com www.nature.com
    Finding useful data across multiple biomedical data repositories using DataMed
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    1. dnkennedy 06 Jun 2017
      Finding useful data across multiple biomedical data repositories using DataMed
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    nature.com/ng/journal/v49/n6/full/ng.3864.html
  76. www.nature.com www.nature.com
    Extending transparency to code
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    1. dnkennedy 04 Jun 2017
      Extending transparency to code
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    nature.com/neuro/journal/v20/n6/full/nn.4579.html
  77. science.sciencemag.org science.sciencemag.org
    Enhancing reproducibility for computational methods
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      Enhancing reproducibility for computational methods
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    science.sciencemag.org/content/354/6317/1240
  78. May 2017
  79. www.nature.com www.nature.com
    Software simplified
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    1. dnkennedy 31 May 2017
      Containerization technology takes the hassle out of setting up software and can boost the reproducibility of data-driven research.
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    nature.com/news/software-simplified-1.22059
  80. Apr 2017
  81. journals.plos.org journals.plos.org
    A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research
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    journals.plos.org/plosbiology/article
  82. Mar 2017
  83. www.nature.com www.nature.com
    Replication data collection highlights value in diversity of replication attempts
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    nature.com/articles/sdata201728
  84. Feb 2017
  85. biorxiv.org biorxiv.org
    Reproducibility2020: Progress and Priorities
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    1. dnkennedy 27 Feb 2017
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    biorxiv.org/content/early/2017/02/16/109017
  86. Jan 2017
  87. www.nature.com www.nature.com
    A manifesto for reproducible science
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    nature.com/articles/s41562-016-0021
  88. www.sciencemag.org www.sciencemag.org
    Rigorous replication effort succeeds for just two of five cancer papers
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    sciencemag.org/news/2017/01/rigorous-replication-effort-succeeds-just-two-five-cancer-papers
  89. github.com github.com
    WagnerLabPapers/Waskom_JNeurosci_2014
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    github.com/WagnerLabPapers/Waskom_JNeurosci_2014
  90. www.thelancet.com www.thelancet.com
    Offline: The crisis in scientific publishing
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    thelancet.com/pdfs/journals/lancet/PIIS0140-6736(16)31132-1.pdf
  91. www.biorxiv.org www.biorxiv.org
    A Data Citation Roadmap for Scholarly Data Repositories
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    biorxiv.org/content/early/2017/10/09/097196
  92. Dec 2016
  93. www.sciencemag.org www.sciencemag.org
    Montreal institute going ‘open’ to accelerate science
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    sciencemag.org/news/2016/01/montreal-institute-going-open-accel-erate-science
  94. journal.frontiersin.org journal.frontiersin.org
    Inter-Method Discrepancies in Brain Volume Estimation May Drive Inconsistent Findings in Autism
    1
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    journal.frontiersin.org/article/10.3389/fnins.2016.00439/full
  95. Nov 2016
  96. www.pnas.org www.pnas.org
    Situating the default-mode network along a principal gradient of macroscale cortical organization
    1
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    pnas.org/content/113/44/12574.full
  97. zenodo.org zenodo.org
    Sharing software and tools for large-scale neuroimaging analyses
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      http://doi.org/10.5281/zenodo.61456
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    zenodo.org/record/61456
  98. www.scientificpaperofthefuture.org www.scientificpaperofthefuture.org
    Training Materials | The Scientific Paper of the Future Initiative
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    scientificpaperofthefuture.org/training-materials
  99. Sep 2016
  100. royalsocietypublishing.org royalsocietypublishing.org
    The natural selection of bad science
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      Natural Selection argument...

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    royalsocietypublishing.org/doi/10.1098/rsos.160384
  101. cacm.acm.org cacm.acm.org
    Why Data Citation Is a Computational Problem
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    cacm.acm.org/magazines/2016/9/206243-why-data-citation-is-a-computational-problem/fulltext
  102. f1000research.com f1000research.com
    <p>ReproNim: A Center for Reproducible Neuroimaging Computa7on to Support Data Discovery, Interoperability and Replicable Results</p>
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      ReproNim

      Neuroinformatics 2016 poster

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    f1000research.com/posters/5-2204
  103. Aug 2016
  104. www.nature.com www.nature.com
    Reproducibility: A tragedy of errors
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    nature.com/news/reproducibility-a-tragedy-of-errors-1.19264
  105. www.frontiersin.org www.frontiersin.org
    Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution
    1
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      Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution
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    frontiersin.org/articles/10.3389/fninf.2016.00034/full
  106. journals.plos.org journals.plos.org
    The Virtuous Cycle of a Data Ecosystem
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      The Virtuous Cycle of a Data Ecosystem
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  107. Jul 2016
  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Ten Simple Rules for Reproducible Computational Research
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      Ten Simple Rules for Reproducible Computational Research
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    ncbi.nlm.nih.gov/labs/pubmed/24204232-ten-simple-rules-for-reproducible-computational-research/
  109. psycnet.apa.org psycnet.apa.org
    A new etiquette for replication.
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    psycnet.apa.org/journals/zsp/45/4/310/
  110. europepmc.org europepmc.org
    Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study
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      Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study
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    europepmc.org/abstract/MED/26207759
  111. ieeexplore.ieee.org ieeexplore.ieee.org
    On the Influence of Confounding Factors in Multisite Brain Morphometry Studies of Developmental Pathologies: Application to Autism Spectrum Disorder
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  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates
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      Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

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    ncbi.nlm.nih.gov/pmc/articles/PMC4948312/
  113. Jun 2016
  114. gigascience.biomedcentral.com gigascience.biomedcentral.com
    Brainhack: a collaborative workshop for the open neuroscience community
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    gigascience.biomedcentral.com/articles/10.1186/s13742-016-0121-x
  115. www.scienceintheclassroom.org www.scienceintheclassroom.org
    Estimating the reproducibility of psychological science
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  116. arxiv.org arxiv.org
    1605.09511v1.pdf
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