74 Matching Annotations
  1. Feb 2017
  2. Jan 2017
  3. hst.mit.edu hst.mit.edu
    IAP2017: Clinical Imaging Informatics: Radiology in 2020 | Harvard-MIT Health Sciences and Technology
    1
  4. Dec 2016
  5. www.secretgeek.net www.secretgeek.net
    What is JSON: the 3 minute JSON Tutorial (secretGeek.net)
    1
  6. Nov 2016
  7. guides.github.com guides.github.com
    Hello World · GitHub Guides
    1
    stepik.org stepik.org
    Stepik.org: online education
    1
    1. We are open for knowledge

      just came across this platform. It's used in PyCharm to provide Python tutorial functionality.

      repronim:training
    www.w3.org www.w3.org
    Data on the Web Best Practices
    1
    1. Data on the Web Best Practices

      A description for different qualities and targets for data sharing or publishing.

      ReproNim ReproNim:Training
    www.software.ac.uk www.software.ac.uk
    Top ten reasons to not share your code (and why you should anyway) | Software Sustainability Institute
    1
    papers.ssrn.com papers.ssrn.com
    False-Positive Psychology: Undisclosed Flexibility in Data Collection and Analysis Allows Presenting Anything as Significant
    1
  8. Oct 2016
  9. metadatacenter.org metadatacenter.org
    Training on Metadata | CEDAR - Center for Expanded Data Annotation and Retrieval
    1
    www.youtube.com www.youtube.com
    [Data4Bio] Numerical Calculus: Differential Equations, Part 1
    1
    linkeddatabook.com linkeddatabook.com
    Linked Data: Evolving the Web into a Global Data Space
    1
    1. Linked Data: Evolving the Web into a Global Data Space

      A comprehensive book on linked data.

      ReproNim ReproNim:Training ReproNim:TRD2
    www.datacarpentry.org www.datacarpentry.org
    Data Carpentry
    1
    1. Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research.

      Training for data skills

      ReproNim ReproNim:Training
  10. Sep 2016
  11. www.biorxiv.org www.biorxiv.org
    Fixing the stimulus-as-fixed-effect fallacy in task fMRI
    1
    www.nhlbi.nih.gov www.nhlbi.nih.gov
    NHLBI Biostatistics Workshop on Recent Advances and Challenges in Statistical Methods - NHLBI, NIH
    1
    events.brainhack.org events.brainhack.org
    2016 Brainhack LA
    1
    www.bigdatau.org www.bigdatau.org
    BD2K Training Coordinating Center
    1
  12. Aug 2016
  13. journals.plos.org journals.plos.org
    Ten Simple Rules for Effective Statistical Practice
    1
    1. Ten Simple Rules for Effective Statistical Practice

      A very nice overview of things to keep in mind when designing experiments and analyzing data with statistics

      ReproNim:Training SHBT:Bootcamp:Datavis
    neurohackweek.github.io neurohackweek.github.io
    Lesson template for Neurohackweek
    1
    1. Lesson template for Neurohackweek

      A GitHub template for creating lesson plans. While this doesn't provide the flexibility of a computational environment within this lesson plan, it serves as a good approach to outline concepts of lessons.

      ReproNim:Training ReproNim
    Local file Local file
    The psychology of parapsychology, or why good researchers publishing good articles in good journals can still get it totally wrong
    1
    projectreporter.nih.gov projectreporter.nih.gov
    Project Information - NIH RePORTER - NIH Research Portfolio Online Reporting Tools Expenditures and Results
    1
    bd2kccc.org bd2kccc.org
    Webinars – BD2KCCC
    1
    bitbucket.org bitbucket.org
    taccaci / sci-apps / source / — Bitbucket
    1
    www.futurelearn.com www.futurelearn.com
    Introduction to Linked Data and the Semantic Web - University of Southampton
    1
    answers.semanticweb.com answers.semanticweb.com
    Untitled document
    1
  14. Jul 2016
  15. journals.plos.org journals.plos.org
    Ten Simple Rules for Reproducible Computational Research
    1
    blogs.warwick.ac.uk blogs.warwick.ac.uk
    Bibliometrics of Cluster Inference, 06/07/16, Neuroimaging Statistics Tips & Tools
    1
    1. Bibliometrics of Cluster Inference

      ReproNIM should publish a set of guidelines for editors for evaluating and reporting resting state studies.

      ReproNim ReproNIM:Training
    learningequality.org learningequality.org
    KA Lite | Learning Equality
    1
    1. An offline version of Khan Academy.

      A lightweight deployable platform for teaching from khan academy.

      ReproNim ReproNim:Training
    www.cambridgesemantics.com www.cambridgesemantics.com
    Getting Started with Semantics
    1
    try.github.io try.github.io
    Try Git
    1
    1. Got 15 minutes and want to learn Git?

      A tutorial from GitHub to learn git.

      ReproNim ReproNim:Training
  16. Jun 2016
  17. www.nih.gov www.nih.gov
    Training
    1
    1. Training

      NIH efforts towards reproducibility. This includes videos for training and discussion material as well.

      ReproNim:Training ReproNim
    www.nature.com www.nature.com
    Home : Statistics for Biologists
    1
    1. Nature Methods' Points of Significance column on statistics explains many key statistical and experimental design concepts.

      Collection of Nature papers: Statistics for biologists

      ReproNIM:Training
    mybinder.org mybinder.org
    binder
    1
    1. FOSS service binding together Jupyter and Kubernetes (to manage docker images) to provide executable Jupyter notebooks.

      ReproNim:Training ReproNim:TRD3:resource
    www.openaire.eu www.openaire.eu
    Project factsheets | General Information
    1
    1. This is primarily for scholarly communication but also link to Zenodo for data I would tag with ReproNim:RelatedProject (in addition to current tags)

      ReproNim ReproNim:TRD1 ReproNim:Training
    singularity.lbl.gov singularity.lbl.gov
    Singularity
    1
    1. An alternative to docker that Chris says is better for cluster and is designed for reproducibility

      ReproNim ReproNim:TRD3 ReproNim:Training
    www.uke.de www.uke.de
    UKE - Systemische Neurowissenschaften
    1
    1. SPM 2016 course

      The 19th annual course for functional MR imaging (SPM) takes from 26 - 28 September 2016 instead. Due to the significant demand for an intensive training in the various methods in this field, takes the course of this year for the first time exclusively as an intensive course over 3 days instead and covers all areas, both of the first attempts to start with SPM to own to developments program codes from , The previous division into a pure beginner and Fortgeschrittenen- part is thus eliminated.

      Date: 26 - 28 September 2016 Location: Hamburg

      ReproNIM:Training ReproNIM:Event
    schoolofdata.org schoolofdata.org
    School of Data - Evidence is Power
    1
    1. School of Data works to empower civil society organizations, journalists and citizens with the skills they need to use data effectively – evidence is power!

      Don't know if this is too beginner for ReproNIM audience, but it has some nice tutorials on how to clean data or extract data from web pages for novices.

      ReproNIM:Training
    www.incf.org www.incf.org
    INCF Short course 2016 | INCF
    1
    1. INCF Short course 2016

      TItle: INCF Short course 2016 Dates: 31 August – 1 September, 2016 Location: Penta Hotel, Oxford Road, Reading RG1 7RH, United Kingdom

      ReproNim ReproNim:Training
    python.g-node.org python.g-node.org
    ASPP2016 [start]
    1
    1. Advanced Scientific Programming in Python

      Title: Advanced Scientific Programming in Python Dates: September 5—11, 2016. Location: Reading, UK

      ReproNim ReproNim:Training
    www.eventbrite.com www.eventbrite.com
    THOR Workshop: Identifiers - Infrastructure, Impact and Innovation
    1
    github.com github.com
    gems-uff/noworkflow
    1
    1. A platform to facilitate collection of provenance information about ran analyses. Somewhat similar in idea to https://pythonhosted.org/Sumatra/

      ReproNim:TRD2 ReproNim:Training
    www.youtube.com www.youtube.com
    What is JSON-LD?
    1
    1. clearly for introduction, lasts 15 min, very clear, would be great to have a couple of exercices to accompany the video

      ReproNim ReproNim:Training
  18. May 2016
  19. www.pgbovine.net www.pgbovine.net
    CDE: Lightweight application virtualization for Linux
    1