35 Matching Annotations
  1. May 2020
    1. . bits

      Casing of new sentences in this section

    2. to coinstac-ui

      Leads to code on GitHub - I can't submit data there

    3. coinstac-simulator for how

      Leads to code folder not documentation

    4. available here.

      Broken link.

    5. application

      Hm.. I was told to contribute data there, not clear why some other than precisely mentioned application, please clarify

    6. DecentralizedComputation

      Here or in that document, point to examples of such applications

    7. to contribute data

      might benefit from clarification, like "make your data available for use by pipelines of other researchers", since contribute usually means to share

    8. LICENSE

      404s. Forgot .md?

    1. direction, in a circular manner

      One direction but circular? Not clear

    2. example

      It is a very simplistic example. Would be nice if followed by a reference to some real life useful ones

    3. consumes


    4. .

      In this list also inconsistent trailing .

    5. .

      Inconsistent trailing .

    6. style

      Asked me to sign in... Even though disconnects from the source, could it point to an included copy?

    7. instructions

      Mention that it is in JavaScript

    1. COINSTAC with gksudo: gksudo ./coinstac A window will appear asking you to type in your user password. Please do so.

      Not clear why root access is required. Does coinstac require root to run, why? What if it is a shared system where I have no root, could be used? Alternative ways to install?

  2. Aug 2016
    1. Thorough review of available (cloud, VM, live) image building tools for Debian. Additional ones (e.g. packer, openstack-debian-images, diskimage-builder) are mentioned in the follow up emails

  3. Jul 2016
  4. Jun 2016
    1. FOSS service binding together Jupyter and Kubernetes (to manage docker images) to provide executable Jupyter notebooks.

  5. May 2016
  6. docker-ui.genouest.org docker-ui.genouest.org
    1. Collection of a docker images for bioinformatics. Large part of them (with debian/ prefix) are autogenerated using packages from Debian-Med (NeuroDebian contributes some there) in an image-per-package style

    1. A review (wiki) by CWL project of approaches for "userspace containers" to solve the use case of running pipelines established using more recent (primarily) debian environments on HPC installations. Mentions projects such as proot, fakechroot, psuedo

    1. A system for automating deployment, operations, and scaling of containerized applications originating from Google. It handles scheduling onto nodes in a compute cluster and actively manages workloads to ensure that their state matches the users declared intentions. Although with a primary accent on web services, I think it (or its ideas) could be of good use for managing collections of the execution environments. There is a nice FLOSS weekly podcast https://twit.tv/shows/floss-weekly/episodes/351 which introduces the platform and its abilities.

    1. An umbrella website as a part of the Moore/Sloan Data Science Environment. New York University, the University of California, Berkeley and the University of Washington , pointing to useful resources @NYU/UW/BIDS(Berkeley) and providing news feed with relevant

    1. Approach similar to CDE (http://www.pgbovine.net/cde.html) for wrapping entirety of the execution environment into a redistributable and possibly reusable (? might not grab all dependencies which weren't excercised in particular analysis) bundle