47 Matching Annotations
  1. Mar 2018
  2. knowledgegap.org knowledgegap.org
    Publishers increasingly in control of scholarly infrastructure and this is why we should care
    1
    1. jbpoline 03 Mar 2018

      A necessary read !

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    knowledgegap.org/index.php/sub-projects/rent-seeking-and-financialization-of-the-academic-publishing-industry/preliminary-findings/
  3. Sep 2017
  4. www.stat.columbia.edu www.stat.columbia.edu
    abandon.pdf
    1
    1. jbpoline 25 Sep 2017
      ReproNim:Training
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    stat.columbia.edu/~gelman/research/unpublished/abandon.pdf
  5. Jun 2017
  6. uoftcoders.github.io uoftcoders.github.io
    Lesson Material
    1
    1. jbpoline 24 Jun 2017
      ReproNim:Training
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    uoftcoders.github.io/studyGroup/lessons/
  7. Jan 2017
  8. www.bigdatau.org www.bigdatau.org
    BD2K Training Coordinating Center
    1
    1. jbpoline 20 Jan 2017
      ReproNim:Training
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    bigdatau.org/data-science-seminars
  9. www.thelancet.com www.thelancet.com
    Offline: The crisis in scientific publishing
    1
    1. jbpoline 10 Jan 2017
      ReproNim
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    thelancet.com/journals/lancet/article/PIIS0140-6736(16)31132-1/abstract
  10. www.thelancet.com www.thelancet.com
    Offline: Data sharing—why editors may have got it wrong
    1
    1. jbpoline 10 Jan 2017
      ReproNim
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    thelancet.com/pdfs/journals/lancet/PIIS0140-6736(16)31638-5.pdf
  11. Dec 2016
  12. dmg.org dmg.org
    PFA · Portable Format for Analytics
    1
    1. jbpoline 07 Dec 2016
      ReproNim ReproNim:TRD2
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    dmg.org/pfa/index.html
  13. Oct 2016
  14. metadatacenter.org metadatacenter.org
    Training on Metadata | CEDAR - Center for Expanded Data Annotation and Retrieval
    1
    1. jbpoline 21 Oct 2016
      ReproNim ReproNim:Training
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    metadatacenter.org/tools-training/training-metadata
  15. mindingthebrain.blogspot.com mindingthebrain.blogspot.com
    Reproducibility project: A front row seat
    2
    1. jbpoline 20 Oct 2016
      ReproNim:Training
    2. jbpoline 20 Oct 2016
      ReproNim
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    mindingthebrain.blogspot.com/2015/09/reproducibility-project-front-row-seat.html
  16. www.youtube.com www.youtube.com
    [Data4Bio] Numerical Calculus: Differential Equations, Part 1
    1
    1. jbpoline 20 Oct 2016
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    youtube.com/watch
  17. 104.197.121.217 104.197.121.217
    py_exp_comp_s2_sol
    1
    1. jbpoline 19 Oct 2016
      ReproNim ReproNim:Training
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    104.197.121.217/user/018ef85309aa42ab37cc51687aa8da9c/notebooks/notebook_s2/py_exp_comp_s2_sol.ipynb
  18. www.speirs.org www.speirs.org
    Understanding Git Submodules
    1
    1. jbpoline 18 Oct 2016
      ReproNim ReproNim:Training
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    speirs.org/blog/2009/5/11/understanding-git-submodules.html
  19. bids.berkeley.edu bids.berkeley.edu
    Stealing Some of Wikimedia's Principles to Democratize Programming
    1
    1. jbpoline 14 Oct 2016
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    bids.berkeley.edu/events/stealing-some-wikimedias-principles-democratize-programming
  20. Sep 2016
  21. www.biorxiv.org www.biorxiv.org
    Fixing the stimulus-as-fixed-effect fallacy in task fMRI
    1
    1. jbpoline 26 Sep 2016
      ReproNim:Training
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    biorxiv.org/content/early/2016/09/25/077131
  22. www.niehs.nih.gov www.niehs.nih.gov
    Research Ethics Timeline (1932-Present)
    1
    1. jbpoline 12 Sep 2016
      ReproNim ReproNim:Training ReproNim:Ethics
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    niehs.nih.gov/research/resources/bioethics/timeline/index.cfm
  23. cryptogenomicon.org cryptogenomicon.org
    from zero to python
    1
    1. jbpoline 11 Sep 2016
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    cryptogenomicon.org/2016/09/08/from-zero-to-python/
  24. www.eur.nl www.eur.nl
    Dilemma game
    1
    1. jbpoline 11 Sep 2016
      ReproNim ReproNim:Training
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    eur.nl/english/eur/publications/integrity/dilemma_game/
  25. Aug 2016
  26. asterisk.dynevor.org asterisk.dynevor.org
    Asterisk - teaching
    1
    1. jbpoline 29 Aug 2016
      ReproNim:Training
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    asterisk.dynevor.org/category/teaching.html
  27. asterisk.dynevor.org asterisk.dynevor.org
    Makes-sense epistemology
    1
    1. jbpoline 29 Aug 2016
      ReproNim:Training
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    asterisk.dynevor.org/makes-sense.html
  28. Local file Local file
    The psychology of parapsychology, or why good researchers publishing good articles in good journals can still get it totally wrong
    1
    1. jbpoline 28 Aug 2016
      ReproNim:Training

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  29. www.talyarkoni.org www.talyarkoni.org
    The psychology of parapsychology, or why good researchers publishing good articles in good journals can still get it totally wrong
    1
    1. jbpoline 27 Aug 2016
      ReproNim:Training
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    talyarkoni.org/blog/2011/01/10/the-psychology-of-parapsychology-or-why-good-researchers-publishing-good-articles-in-good-journals-can-still-get-it-totally-wrong/
  30. projectreporter.nih.gov projectreporter.nih.gov
    Project Information - NIH RePORTER - NIH Research Portfolio Online Reporting Tools Expenditures and Results
    1
    1. jbpoline 25 Aug 2016
      ReproNim:Training
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    projectreporter.nih.gov/project_description.cfm
  31. github.com github.com
    profjsb/python-seminar
    1
    1. jbpoline 24 Aug 2016
      ReproNim ReproNim:Training
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    github.com/profjsb/python-seminar
  32. www.mkbergman.com www.mkbergman.com
    A Decade in the Trenches of the Semantic Web | AI3:::Adaptive Information
    1
    1. jbpoline 24 Aug 2016
      ReproNim
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    mkbergman.com/acronyms-glossary/
  33. blog.semantic-web.at blog.semantic-web.at
    Insights into Nature’s Data Publishing Portal |The Semantic Puzzle
    1
    1. jbpoline 19 Aug 2016
      ReproNim:Training ReproNim:TRD1
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    blog.semantic-web.at/2016/03/30/insights-into-natures-data-publishing-portal/
  34. www.futurelearn.com www.futurelearn.com
    Introduction to Linked Data and the Semantic Web - University of Southampton
    2
    1. jbpoline 10 Aug 2016
      LinkedData
    2. jbpoline 10 Aug 2016
      ReproNim:Training ReproNim
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    futurelearn.com/courses/linked-data
  35. answers.semanticweb.com answers.semanticweb.com
    Untitled document
    1
    1. jbpoline 04 Aug 2016

      a very good first introduction to linked data / semantic web technologies with the "good and bad" ...

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    answers.semanticweb.com/questions/2918/why-is-rdf-so-old-complicated-unpopular-and-still-not-discarded
  36. Jul 2016
  37. www.revolvy.com www.revolvy.com
    "Minimum Information Standards" on Revolvy.com
    1
    1. jbpoline 28 Jul 2016
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    revolvy.com/main/index.php
  38. services.github.com services.github.com
    GitHub Services - Training
    1
    1. jbpoline 28 Jul 2016
      ReproNim ReproNim:Training
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    services.github.com/training/
  39. matthew-brett.github.io matthew-brett.github.io
    The curious coder’s guide to git — Curious git
    1
    1. jbpoline 18 Jul 2016
      ReproNim:training ReproNim:TRD3
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    matthew-brett.github.io/curious-git/curious_git.html
  40. www.crashcourse.ca www.crashcourse.ca
    An introduction to Linux kernel programming - Lesson 1: Building and running a new Linux kernel
    1
    1. jbpoline 11 Jul 2016
      operating system training linux kernel
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    crashcourse.ca/introduction-linux-kernel-programming/lesson-1-building-and-running-new-linux-kernel
  41. Jun 2016
  42. centerforopenneuroscience.org centerforopenneuroscience.org
    CON
    1
    1. jbpoline 12 Jun 2016
      ReproNim
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    centerforopenneuroscience.org/
  43. prakhar.me prakhar.me
    Docker for Beginners
    1
    1. jbpoline 08 Jun 2016
      ReproNim ReproNim:Training ReproNim:TRD3
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    prakhar.me/docker-curriculum/
  44. www.w3schools.com www.w3schools.com
    W3Schools Online Web Tutorials
    1
    1. jbpoline 07 Jun 2016
      ReproNim:Training ReproNim
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    w3schools.com/default.asp
  45. www.openaire.eu www.openaire.eu
    Project factsheets | General Information
    1
    1. jbpoline 06 Jun 2016

      This is primarily for scholarly communication but also link to Zenodo for data I would tag with ReproNim:RelatedProject (in addition to current tags)

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    openaire.eu/project-factsheets
  46. singularity.lbl.gov singularity.lbl.gov
    Singularity
    1
    1. jbpoline 06 Jun 2016

      An alternative to docker that Chris says is better for cluster and is designed for reproducibility

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    singularity.lbl.gov/
  47. www.youtube.com www.youtube.com
    What is JSON-LD?
    1
    1. jbpoline 02 Jun 2016

      clearly for introduction, lasts 15 min, very clear, would be great to have a couple of exercices to accompany the video

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    youtube.com/watch
  48. May 2016
  49. xpra.org xpra.org
    xpra home page
    1
    1. jbpoline 31 May 2016
      ReproNim:TRD3 ReproNim:Training
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    xpra.org/
  50. biorxiv.org biorxiv.org
    A practical guide for improving transparency and reproducibility in neuroimaging research
    1
    1. jbpoline 31 May 2016

      ReproNim:Bibliography

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    biorxiv.org/content/biorxiv/early/2016/04/12/039354.full.pdf
  51. www.pgbovine.net www.pgbovine.net
    CDE: Lightweight application virtualization for Linux
    1
    1. jbpoline 31 May 2016
      ReproNim ReproNim:Training
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    pgbovine.net/cde.html
  52. vida-nyu.github.io vida-nyu.github.io
    ReproZip - About
    1
    1. jbpoline 31 May 2016
      ReproNim ReproNim:Training
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    vida-nyu.github.io/reprozip/
  53. www.eventbrite.com www.eventbrite.com
    THOR Workshop: Identifiers - Infrastructure, Impact and Innovation
    1
    1. jbpoline 31 May 2016
      ReproNim ReproNim:Training
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    eventbrite.com/e/thor-workshop-identifiers-infrastructure-impact-and-innovation-tickets-25595718483
  54. www.youtube.com www.youtube.com
    What is JSON-LD?
    2
    1. jbpoline 26 May 2016

      introduction to RDF / RDFa /N3 notations and vocabulary

      CRNC CRNC:Training
    2. jbpoline 26 May 2016
      CRNC CRNC:Training
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    youtube.com/watch
  55. prakhar.me prakhar.me
    Docker for Beginners
    1
    1. jbpoline 18 May 2016

      This is a great introduction to docker. Requires: installation of docker. level : introduction

      CRNC CRNC:Training
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    prakhar.me/docker-curriculum/