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  1. Oct 2023
  2. blog.pragmaticengineer.com blog.pragmaticengineer.com
    What TPMs Do and What Software Engineers Can Learn From Them
    1
    1. bearzk 01 Oct 2023
      'The TPM owns the ‘when?’ and ‘who?’ questions. The PM owns the ‘why?’ and ‘what?’ The EM and the engineering team own the ‘how?’ This is the shortest elevator pitch I have.
      tpm
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    blog.pragmaticengineer.com/what-do-tpms-do/
  3. Sep 2018
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
    1
    1. rschulz 13 Sep 2018
      Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
      RNAseq TPM salmon transcript-length edgeR tximport R bioconductor
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    ncbi.nlm.nih.gov/pmc/articles/PMC4712774/
  5. Feb 2018
  6. haroldpimentel.wordpress.com haroldpimentel.wordpress.com
    In RNA-Seq, 2 != 2: Between-sample normalization
    1
    1. rschulz 19 Feb 2018
      In RNA-Seq, 2 != 2: Between-sample normalization
      RNAseq normalisation DESeq FPKM TPM
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    haroldpimentel.wordpress.com/2014/12/08/in-rna-seq-2-2-between-sample-normalization/
  7. haroldpimentel.wordpress.com haroldpimentel.wordpress.com
    What the FPKM? A review of RNA-Seq expression units
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    1. rschulz 07 Feb 2018
      A review of RNA-Seq expression units
      RNAseq TPM FPKM effectiveLength kallisto
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    haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/